Home
Trees
Indices
Help
Suite 2012 Schrodinger Python API
[
hide private
]
[
frames
] |
no frames
]
[
Identifiers
|
To Do
|
Deprecations
]
Identifier Index
[
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
_
]
C
c
(in
schrodinger.application.desmond.gchart
)
CGCOREHOP_PC_CORETITLE
(in
schrodinger.infra.mm
)
command()
(in
MWidgetAction
)
c
(in
schrodinger.application.lid.lid2d.draw
)
CGCOREHOP_PC_GEOMDEV
(in
schrodinger.infra.mm
)
command()
(in
MakeProjectEntry
)
c()
(in
PropFilterDialog
)
CGCOREHOP_PC_NMATCH
(in
schrodinger.infra.mm
)
command()
(in
Orient
)
c()
(in
App
)
cgen()
(in
ComUtil
)
command()
(in
Origin
)
c()
(in
SaveFileDialog
)
cget()
(in
_ComboBox
)
command()
(in
PolarContactsObject
)
c()
(in
AddDefinitionDialog
)
cget()
(in
_EntryField
)
command()
(in
PolarContactsOnlyMainchain
)
c()
(in
LigfilterFrame
)
chain
(in
Cut
)
command()
(in
PolarContactsOnlySidechain
)
c0
(in
_FFIODihedral
)
chain
(in
TextualStructure
)
command()
(in
PolarContactsToAnyAtoms
)
c0
(in
_FFDihedral
)
chain
(in
_Residue
)
command()
(in
PolarContactsToAnyNonSolvent
)
c1
(in
_FFIOAngle
)
chain
(in
_StructureAtom
)
command()
(in
PolarContactsToEntry
)
c1
(in
_FFIOBond
)
chain()
(in
Structure
)
command()
(in
PolarContactsToEntryWithoutSolvent
)
c1
(in
_FFIOConstraint
)
CHAIN_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
PolarContactsWithSidechains
)
c1
(in
_FFIODihedral
)
chainNames()
(in
_StructureChainIterator
)
command()
(in
PolarContactsWithSolvent
)
c1
(in
_FFIOPair
)
change_current_pick()
(in
HomologyRama
)
command()
(in
PolarContactsWithoutIntraMainchain
)
c1
(in
_FFIORestraint
)
change_current_pick()
(in
Rama
)
command()
(in
PolarContactsWithoutMainchain
)
c1
(in
_FFIOSite
)
change_pka()
(in
amine_changeable
)
command()
(in
PolarContactsWithoutSolvent
)
c1
(in
_FFIOVdwtype
)
change_pka()
(in
carboxyl_changeable
)
command()
(in
PrettyPubPreset
)
c1
(in
_FFIOVdwtypescombined
)
change_pka()
(in
changeable
)
command()
(in
Quit
)
c1
(in
_FFIOVirtual
)
change_pka()
(in
histidine_changeable
)
command()
(in
Ray
)
c1
(in
_FFAngle
)
change_pka()
(in
rotatable_changeable
)
command()
(in
Reinitialize
)
c1
(in
_FFBond
)
changeable
(in
ProtAssign
)
command()
(in
RemoveHydrogens
)
c1
(in
_FFConstraint
)
changeBFactorPlot()
(in
MultiReportWithChart
)
command()
(in
RemovePC
)
c1
(in
_FFDihedral
)
changeEvent()
(in
sketcher
)
command()
(in
RemoveWaters
)
c1
(in
_FFPair
)
changeEvent()
(in
sketcherGUIMultiColumnToolBar
)
command()
(in
Rename
)
c1
(in
_FFRestraint
)
changeEvent()
(in
sketcherView
)
command()
(in
RestrictSelection
)
c1
(in
_FFSite
)
changeGUIforWaterMap()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
command()
(in
RestrictToInorganic
)
c1
(in
_FFVdwtype
)
changeModel()
(in
ProteinStructureQualityViewer
)
command()
(in
RestrictToOrganic
)
c1
(in
_FFVirtual
)
changePreset()
(in
ProteinStructureQualityViewer
)
command()
(in
RestrictToPolymer
)
c2
(in
_FFIOAngle
)
changeProtein()
(in
MultiReportWithChart
)
command()
(in
RestrictToSolvent
)
c2
(in
_FFIOBond
)
changeProtFile()
(in
RelaxFrame
)
command()
(in
RestrictToVisible
)
c2
(in
_FFIOConstraint
)
changeTemp()
(in
EnsembleClassFrame
)
command()
(in
Select
)
c2
(in
_FFIODihedral
)
charge
(in
_FFIOSite
)
command()
(in
SelectWithinAny
)
c2
(in
_FFIOPair
)
CHARGE
(in
MopacCalculation
)
command()
(in
SelectWithinCalpha
)
c2
(in
_FFIORestraint
)
charge
(in
CmsStructure
)
command()
(in
SelectWithinChain
)
c2
(in
_FFIOSite
)
charge
(in
DesmondSimulation
)
command()
(in
SelectWithinEntry
)
c2
(in
_FFIOVdwtype
)
charge
(in
_DesmondFrame
)
command()
(in
SelectWithinMolecule
)
c2
(in
_FFIOVdwtypescombined
)
charge
(in
FFStructure
)
command()
(in
SelectWithinResidue
)
c2
(in
_FFIOVirtual
)
charge
(in
_FFSite
)
command()
(in
ShowBAndS
)
c2
(in
_FFAngle
)
charge_precision
(in
JaguarAtomicResults
)
command()
(in
ShowCartoon
)
c2
(in
_FFBond
)
CHARGED_POS
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
ShowLabel
)
c2
(in
_FFConstraint
)
CHARGED_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
ShowLigandLines
)
c2
(in
_FFDihedral
)
CHARGED_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
command()
(in
ShowLigandSpheres
)
c2
(in
_FFPair
)
CHARGED_RESIDUES
(in
schrodinger.structutils
)
command()
(in
ShowLigandTubes
)
c2
(in
_FFRestraint
)
CHARGED_RESIDUES
(in
StructuralInteractionFingerprintGenerator
)
command()
(in
ShowLines
)
c2
(in
_FFSite
)
ChargeFilterStage
(in
schrodinger.pipeline.stages.filtering
)
command()
(in
ShowMesh
)
c2
(in
_FFVdwtype
)
charges_c
(in
schrodinger.infra.mopac
)
command()
(in
ShowNonBonded
)
c2
(in
_FFVirtual
)
charPositionInLine
(in
CommonTree
)
command()
(in
ShowNonBondedSpheres
)
c3
(in
_FFIOConstraint
)
CharStream
(in
schrodinger.application.desmond.antlr3.streams
)
command()
(in
ShowRibbon
)
c3
(in
_FFIODihedral
)
chdir()
(in
schrodinger.application.desmond.util
)
command()
(in
ShowSpheres
)
c3
(in
_FFIORestraint
)
check()
(in
JobOutput
)
command()
(in
ShowSurface
)
c3
(in
_FFIOVirtual
)
check()
(in
ArraySyntax
)
command()
(in
ShowTubes
)
c3
(in
_FFConstraint
)
check()
(in
Syntax
)
command()
(in
SimplePreset
)
c3
(in
_FFDihedral
)
check()
(in
Grid
)
command()
(in
SumFormalCharge
)
c3
(in
_FFRestraint
)
check()
(in
PhaseDB
)
command()
(in
SumPartialCharge
)
c3
(in
_FFVirtual
)
check()
(in
PipeIO
)
command()
(in
TechnicalPreset
)
c4
(in
_FFIOConstraint
)
check()
(in
Structures
)
command()
(in
ToggleState
)
c4
(in
_FFIODihedral
)
check()
(in
Text
)
command()
(in
ToggleVisibleObjectsState
)
c4
(in
_FFIOVirtual
)
check_baseline_args()
(in
schrodinger.antibody_db_manage_gui
)
command()
(in
Zoom
)
c4
(in
_FFConstraint
)
check_cms_file()
(in
Simulate
)
command()
(in
FakeMaestro
)
c4
(in
_FFDihedral
)
check_for_nonnative_residues()
(in
_ChopCap
)
command()
(in
schrodinger.maestro.maestro
)
c4
(in
_FFVirtual
)
check_formula()
(in
schrodinger.infra.propedit
)
command()
(in
TestApp
)
c5
(in
_FFIOConstraint
)
check_hbond_distance_and_move_away()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
command()
(in
TestApp
)
c5
(in
_FFIODihedral
)
check_key()
(in
schrodinger.application.desmond.mdkey
)
command_callback_add()
(in
schrodinger.maestro.maestro
)
c5
(in
_FFIOVirtual
)
check_key2()
(in
schrodinger.application.desmond.mdkey
)
command_callback_remove()
(in
schrodinger.maestro.maestro
)
c5
(in
_FFConstraint
)
check_map()
(in
schrodinger.utils.sea
)
CommandError
(in
schrodinger.job.remote_command
)
c5
(in
_FFDihedral
)
check_map2()
(in
schrodinger.utils.sea
)
commandLine()
(in
App
)
c5
(in
_FFVirtual
)
check_new_best_fit()
(in
ReorgFitting
)
commandLineArgs()
(in
StartDialogParams
)
c6
(in
_FFIOConstraint
)
check_param()
(in
StageBase
)
commandLineArgs()
(in
StartDialogParams
)
c6
(in
_FFIODihedral
)
check_rule()
(in
DesmondTyper
)
commandLineOptions()
(in
GenOptions
)
c6
(in
_FFIOVirtual
)
check_rule()
(in
McproTyper
)
commandLineOptions()
(in
StartDialogParams
)
c6
(in
_FFConstraint
)
check_rule()
(in
WatermapTyper
)
commandLineOptions()
(in
StartDialogParams
)
c6
(in
_FFDihedral
)
check_sanity()
(in
schrodinger.application.desmond.cms
)
commence()
(in
DebugEventListener
)
c6
(in
_FFVirtual
)
check_st_valences()
(in
schrodinger.application.prepwizard
)
commence()
(in
DebugEventSocketProxy
)
c6()
(in
Vdw
)
check_subjob_output()
(in
DockingStage
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
c_
(in
schrodinger.protein.assignment
)
check_subset_existence()
(in
schrodinger.pipeline.stages.phase
)
COMMENT
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
cache_name
(in
schrodinger.job.hunt_cache
)
check_system()
(in
DesmondTyper
)
commit()
(in
Entry
)
CacheMode
check_system()
(in
McproTyper
)
commit()
(in
EntryGroup
)
CacheMode
check_system()
(in
SysType
)
commit()
(in
Workspace
)
CacheModeFlag
check_system()
(in
WatermapTyper
)
common
(in
schrodinger.graphics3d
)
calc_average_vdw_coeff()
(in
schrodinger.application.desmond.cms
)
CHECKBUTTON
(in
Table
)
CommonErrorNode
(in
schrodinger.application.desmond.antlr3.tree
)
calc_block_average()
(in
schrodinger.application.desmond.simulation_block_data
)
Checkbutton
(in
schrodinger.ui.widget.tkinterwidget
)
CommonToken
(in
schrodinger.application.desmond.antlr3.tokens
)
calc_contrib()
(in
schrodinger.application.desmond.fepana
)
CheckbuttonCell
(in
schrodinger.ui.widgettable
)
CommonTokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
calc_convergence_rate()
(in
schrodinger.application.desmond.fepana
)
CheckbuttonColumn
(in
schrodinger.ui.widgettable
)
CommonTree
(in
schrodinger.application.desmond.antlr3.tree
)
calc_forward_reversed_work_overlap()
(in
schrodinger.application.desmond.fepana
)
checkCompatibleTypes()
(in
schrodinger.infra.propedit
)
CommonTreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
calc_free_energy_for_abfe_cross_link()
(in
schrodinger.application.desmond.fepana
)
checkCT()
(in
schrodinger.infra.propedit
)
CommonTreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
calc_free_energy_for_abfe_cross_link_xu()
(in
schrodinger.application.desmond.fepana
)
checkerboard
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
comp()
(in
mexpParser
)
calc_freeenergy_rtime_function()
(in
schrodinger.application.desmond.fepana
)
checkerboardBRUSH
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
comp_out_code()
(in
schrodinger.application.lid.lid2d.utils
)
calc_freeenergy_stime_function()
(in
schrodinger.application.desmond.fepana
)
checkFile()
(in
Stage
)
comp_return
(in
mexpParser
)
calc_freeenergy_time_function()
(in
schrodinger.application.desmond.fepana
)
checkFiles()
(in
Stage
)
compare_atom_group()
(in
schrodinger.application.desmond.mdkey
)
calc_lambda_sim_matrix()
(in
schrodinger.application.desmond.fepana
)
checkForCompletion()
(in
QikPropStage
)
compare_float()
(in
schrodinger.application.jaguar.output
)
calc_lambda_window_overlap()
(in
schrodinger.application.desmond.fepana
)
checkForMatch()
(in
BooleanDatabaseCriterion
)
compare_list_first_entry()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
calc_long_range_dispersion_energy()
(in
schrodinger.application.desmond.fepana
)
checkForMatch()
(in
NumericalDatabaseCriterion
)
compare_list_first_two_entries()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
calc_prob_profile()
(in
schrodinger.application.desmond.ana
)
checkForMatch()
(in
StringDatabaseCriterion
)
compare_restr_grp()
(in
schrodinger.application.desmond.mdkey
)
calc_rmsd()
(in
schrodinger.application.desmond.fepana
)
checkin()
(in
License
)
compat
(in
schrodinger.application.desmond.antlr3
)
calc_rmsd()
(in
schrodinger.trajectory.rmsd2d
)
checkin()
(in
License
)
compatible_types
(in
schrodinger.infra.propedit
)
calc_rmsd_matrix()
(in
schrodinger.trajectory.rmsd2d
)
checkInputs()
(in
Stage
)
compile_xy()
(in
schrodinger.application.desmond.gchart
)
calc_rmsd_matrix_block()
(in
schrodinger.trajectory.rmsd2d
)
checkInputs()
(in
DockingStage
)
COMPLETED
(in
schrodinger.pipeline.pipeline
)
calc_time_series()
(in
schrodinger.application.desmond.ana
)
checkLambdaOptions()
(in
DrawDdgPanel
)
CompleteSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
calc_type()
(in
schrodinger.application.jaguar.output
)
checkLambdaOptions()
(in
DrawFepPanel
)
Complex
(in
schrodinger.application.glide.poseviewconvert
)
calc_work_prob_distr()
(in
schrodinger.application.desmond.fepana
)
checkLambdaOptionsValue()
(in
DrawDdgPanel
)
Complex
(in
schrodinger.application.glide.xp6classes
)
calcActivesInN()
(in
Calculator
)
checkLambdaOptionsValue()
(in
DrawFepPanel
)
COMPLEX
(in
ModelSystem
)
calcActivesInNStar()
(in
Calculator
)
checkParameters()
(in
Stage
)
compress()
(in
schrodinger.pipeline.stages.glide
)
calcAngle()
(in
_PBCMeasureMananger
)
CHECKPOINT_FNAME
(in
schrodinger.application.desmond.cmj
)
compress()
(in
schrodinger.pipeline.stages.ligprep
)
calcAUAC()
(in
Calculator
)
CHECKPOINT_SUFFIX
(in
schrodinger.application.desmond.cmj
)
compute
(in
schrodinger.application.lid.lid2d
)
calcAveNumberOutrankingDecoys()
(in
Calculator
)
checkProducts()
(in
Stage
)
compute3DAngle()
(in
schrodinger.application.lid.lid2d.utils
)
calcBEDROC()
(in
Calculator
)
checkProducts()
(in
LigPrepStage
)
compute_all_hbond_res_overlaps()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calcBondScore()
(in
AssignBondOrders
)
checkPropertyType()
(in
PropFilterDialog
)
compute_alogp()
(in
schrodinger.application.medchem.property
)
calcDEF()
(in
Calculator
)
checkPropertyType()
(in
LigfilterFrame
)
compute_catpi()
(in
schrodinger.structutils.interactions
)
calcDEFP()
(in
Calculator
)
checkTab()
(in
_BaseAdvancedDialog
)
compute_complex_info()
(in
schrodinger.application.lid.lid2d.compute
)
calcDEFStar()
(in
Calculator
)
checkUserNames()
(in
PropertySelectorWithRanges
)
compute_complex_info()
(in
LigandInteractionDiagram
)
calcDihedral()
(in
_PBCMeasureMananger
)
checkUserNames()
(in
PropertySelector
)
compute_font_sizes()
(in
schrodinger.application.lid.lid2d.compute
)
calcDistance()
(in
_PBCMeasureMananger
)
checkUserOutputs()
(in
Pipeline
)
compute_hbonds()
(in
schrodinger.application.lid.lid2d.compute
)
calcEF()
(in
Calculator
)
checkValidity()
(in
AdvOptionsFrame
)
compute_ligand_atom_placements()
(in
schrodinger.application.lid.lid2d.compute
)
calcEFF()
(in
Calculator
)
checkValidity()
(in
AtomGroupFrame
)
compute_line_width()
(in
schrodinger.application.lid.lid2d.compute
)
calcEFP()
(in
Calculator
)
checkValidity()
(in
EnsembleClassFrame
)
compute_medchem_properties()
(in
schrodinger.application.medchem.property
)
calcEFStar()
(in
Calculator
)
checkValidity()
(in
EnsembleTab
)
compute_molecules()
(in
schrodinger.application.lid.lid2d.compute
)
calcFOD()
(in
Calculator
)
checkValidity()
(in
IntegrationTab
)
compute_mw()
(in
schrodinger.application.medchem.property
)
calcMWUROC()
(in
Calculator
)
checkValidity()
(in
InteractionTab
)
compute_num_hbond_acceptors()
(in
schrodinger.application.medchem.property
)
calcPlanarAngle()
(in
_PBCMeasureMananger
)
checkValidity()
(in
MinOutputFrame
)
compute_num_hbond_donors()
(in
schrodinger.application.medchem.property
)
calcProperty()
(in
schrodinger.infra.propedit
)
checkValidity()
(in
MinimizerFrame
)
compute_num_rot_bonds()
(in
schrodinger.application.medchem.property
)
calcRIE()
(in
Calculator
)
checkValidity()
(in
OutputTab
)
compute_picats()
(in
schrodinger.application.lid.lid2d.compute
)
calcRmsd()
(in
ConformerRmsd
)
checkValidity()
(in
RandVelFrame
)
compute_pipi_stacking()
(in
schrodinger.application.lid.lid2d.compute
)
calcROC()
(in
Calculator
)
checkValidity()
(in
RelaxFrame
)
compute_polar_surf_area()
(in
schrodinger.application.medchem.property
)
calcSe()
(in
Calculator
)
checkValidity()
(in
RestraintsTab
)
compute_residue_overlap()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calcSp()
(in
Calculator
)
checkValidity()
(in
SimOptionsFrame
)
compute_residue_overlaps()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calculate()
(in
PropertyCalculator
)
checkValidity()
(in
_BaseGroup
)
compute_residue_placements()
(in
schrodinger.application.lid.lid2d.compute
)
calculate()
(in
MopacCalculation
)
checkValidity()
(in
_MdcBase
)
compute_smiles()
(in
schrodinger.application.medchem.property
)
calculate()
(in
schrodinger.application.mopac
)
checkValues()
(in
_App
)
compute_title()
(in
schrodinger.application.medchem.property
)
calculate()
(in
ConformerRmsd
)
checkValues()
(in
App
)
computeContextSensitiveRuleFOLLOW()
(in
BaseRecognizer
)
calculate()
(in
ConformerRmsdX
)
chiAngles()
(in
_Rotamer
)
computeCrossProduct()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_alogp1()
(in
schrodinger.application.moldescriptors
)
childEvent()
(in
sketcher
)
computeErrorRecoverySet()
(in
BaseRecognizer
)
calculate_alogp10()
(in
schrodinger.application.moldescriptors
)
childEvent()
(in
sketcherGUIMultiColumnToolBar
)
computeFES()
(in
MetaDynamicsAnalysis
)
calculate_alogp2()
(in
schrodinger.application.moldescriptors
)
childEvent()
(in
sketcherView
)
computeNormalFrom2Vectors()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_alogp3()
(in
schrodinger.application.moldescriptors
)
chirality
(in
_StructureAtom
)
ComputeSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_alogp4()
(in
schrodinger.application.moldescriptors
)
chirality_data_set
(in
Report
)
ComputeSurfaceArea
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_alogp5()
(in
schrodinger.application.moldescriptors
)
choose_ligand()
(in
schrodinger.ui.chooseligand
)
computeTokenTypes()
(in
schrodinger.application.desmond.antlr3.treewizard
)
calculate_alogp6()
(in
schrodinger.application.moldescriptors
)
choose_ligand_cb()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
computeUpVectorForLookAt()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_alogp7()
(in
schrodinger.application.moldescriptors
)
choose_ligand_headers
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
ComUtil
(in
schrodinger.application.macromodel.utils
)
calculate_alogp8()
(in
schrodinger.application.moldescriptors
)
chooseligand
(in
schrodinger.ui
)
ComUtil_2010
(in
schrodinger.application.macromodel.utils
)
calculate_alogp9()
(in
schrodinger.application.moldescriptors
)
ChooseLigandDialog
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
ComUtilAppSci
(in
schrodinger.application.macromodel.utils
)
calculate_atom_rings_count()
(in
schrodinger.application.moldescriptors
)
ChooseLigandDialog
(in
schrodinger.ui.chooseligand
)
Concluder
calculate_atomcount()
(in
schrodinger.application.moldescriptors
)
ChooseLigandModel
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
config
(in
schrodinger.application.desmond
)
calculate_average_angle()
(in
schrodinger.structutils.assignbondorders
)
ChooseLigandModel
(in
schrodinger.ui.chooseligand
)
config()
(in
_Step
)
calculate_average_connectivity_chi_0()
(in
schrodinger.application.moldescriptors
)
chop_display_update()
(in
ModelSystemPanel
)
config()
(in
Table
)
calculate_average_connectivity_chi_1()
(in
schrodinger.application.moldescriptors
)
CHOP_NAME
(in
ModelSystem
)
config()
(in
TableButton
)
calculate_average_connectivity_chi_2()
(in
schrodinger.application.moldescriptors
)
chop_protein()
(in
_ChopCap
)
config()
(in
_ComboBox
)
calculate_average_connectivity_chi_3()
(in
schrodinger.application.moldescriptors
)
CHUNK_SIZE
(in
schrodinger.structutils.sort
)
config()
(in
_EntryField
)
calculate_average_connectivity_chi_4()
(in
schrodinger.application.moldescriptors
)
cl
(in
schrodinger.application.lid.lid2d.draw
)
config()
(in
_Spinbox
)
calculate_average_connectivity_chi_5()
(in
schrodinger.application.moldescriptors
)
ClassicToken
(in
schrodinger.application.desmond.antlr3.tokens
)
config()
(in
TableTextButton
)
calculate_average_eccentricity()
(in
schrodinger.application.moldescriptors
)
Clean
(in
schrodinger.application.bioluminate.pml_menus
)
config()
(in
_TableWidget
)
calculate_average_valence_connectivity_chi_0()
(in
schrodinger.application.moldescriptors
)
clean()
(in
Refiner
)
config_filename
(in
schrodinger.utils.urllib
)
calculate_average_valence_connectivity_chi_1()
(in
schrodinger.application.moldescriptors
)
clean_drawing()
(in
schrodinger.application.desmond.maestro
)
configs
(in
schrodinger.application.bioluminate.actions
)
calculate_average_valence_connectivity_chi_2()
(in
schrodinger.application.moldescriptors
)
clean_project_table()
(in
InputGroup
)
configure()
(in
_Step
)
calculate_average_valence_connectivity_chi_3()
(in
schrodinger.application.moldescriptors
)
clean_struc()
(in
schrodinger.application.desmond.mdkey
)
configure()
(in
TableButton
)
calculate_average_valence_connectivity_chi_4()
(in
schrodinger.application.moldescriptors
)
clean_ws()
(in
ModelSystemPanel
)
configure()
(in
_Spinbox
)
calculate_average_valence_connectivity_chi_5()
(in
schrodinger.application.moldescriptors
)
cleanTempFiles()
(in
PropertyCalculator
)
configure()
(in
TableTextButton
)
calculate_average_vertex_distance_degree()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
Engine
)
configure()
(in
_TableWidget
)
calculate_balaban_centric_index()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
ConstraintGroup
)
confirmOverwriting()
(in
DesmondApp
)
calculate_balaban_distance_connectivity()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
Dock
)
confirmOverwriting()
(in
McproApp
)
calculate_balaban_electronegativity_matrix()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
GlideJob
)
confirmOverwriting()
(in
_App
)
calculate_balaban_mass_matrix()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
Gridgen
)
ConformerRmsd
(in
schrodinger.structutils.rmsd
)
calculate_balaban_polarizability_matrix()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
_JobResourceHolder
)
ConformerRmsdX
(in
schrodinger.structutils.rmsd
)
calculate_balaban_van_der_waals_matrix()
(in
schrodinger.application.moldescriptors
)
cleanup()
(in
ProtAssign
)
ConfSearch
(in
schrodinger.application.macromodel.input
)
calculate_balaban_z_matrix()
(in
schrodinger.application.moldescriptors
)
cleanUp()
(in
sketcher
)
CONFSEARCH_SPECS
(in
schrodinger.application.macromodel.input
)
calculate_bond_rings_count()
(in
schrodinger.application.moldescriptors
)
cleanup_components()
(in
Balloon
)
ConfSearchStage
(in
schrodinger.pipeline.stages.macromodel
)
calculate_bondcount()
(in
schrodinger.application.moldescriptors
)
cleanup_components()
(in
schroPmwWrapper
)
conj
(in
schrodinger.protein.assignment
)
calculate_centralization()
(in
schrodinger.application.moldescriptors
)
cleanup_files
(in
schrodinger.application.moldescriptors
)
conjugate
(in
schrodinger.protein.assignment
)
calculate_chiral_count()
(in
schrodinger.application.moldescriptors
)
cleanupIntermediateFiles()
(in
Pipeline
)
connect()
(in
schrodinger.structutils.build
)
calculate_connectivity_chi_0()
(in
schrodinger.application.moldescriptors
)
clear()
(in
CriteriaListModel
)
connectAction()
(in
Factory
)
calculate_connectivity_chi_2()
(in
schrodinger.application.moldescriptors
)
clear()
(in
PairDict
)
connectNotify()
(in
sketcher
)
calculate_connectivity_chi_3()
(in
schrodinger.application.moldescriptors
)
clear()
(in
PathModel
)
connectNotify()
(in
sketcherGUIMultiColumnToolBar
)
calculate_connectivity_chi_4()
(in
schrodinger.application.moldescriptors
)
clear()
(in
ResiduesModel
)
connectNotify()
(in
sketcherView
)
calculate_connectivity_chi_5()
(in
schrodinger.application.moldescriptors
)
clear()
(in
StrucListModel
)
connectSlot()
(in
SAction
)
calculate_coords()
(in
MaestroArrow
)
clear()
(in
AtomGroupModel
)
Consensus
(in
schrodinger.application.bioluminate.protein
)
calculate_cyclomatic()
(in
schrodinger.application.moldescriptors
)
clear()
(in
PosResModel
)
CONSENSUS_DISPLAY
(in
schrodinger.application.bioluminate.actions.configs
)
calculate_dihedral()
(in
schrodinger.structutils.assignbondorders
)
clear()
(in
TableModel
)
CONSENSUS_LIGAND
(in
schrodinger.application.bioluminate.actions.icons
)
calculate_e_state()
(in
schrodinger.application.moldescriptors
)
clear()
(in
TwoDWidget
)
CONSENSUS_TOOLBAR
(in
ViewerWindow
)
calculate_eccentric()
(in
schrodinger.application.moldescriptors
)
clear()
(in
Group
)
consensusCounterions()
(in
ConsensusToolBar
)
calculate_eccentric_connectivity()
(in
schrodinger.application.moldescriptors
)
clear()
(in
schrodinger.infra.propedit
)
consensusLigands()
(in
ConsensusToolBar
)
calculate_eccentricity()
(in
schrodinger.application.moldescriptors
)
clear()
(in
Membrane_Model
)
ConsensusToolBar
(in
schrodinger.application.bioluminate.ssv.toolbars
)
calculate_first_mohar()
(in
schrodinger.application.moldescriptors
)
clear()
(in
_StructureProperty
)
consensusWaters()
(in
ConsensusToolBar
)
calculate_geometric_topological()
(in
schrodinger.application.moldescriptors
)
clear()
(in
CriteriaListModel
)
CONST
(in
schrodinger.application.desmond.envir
)
calculate_global_topological_charge()
(in
schrodinger.application.moldescriptors
)
clear()
(in
PropertySelector
)
constant_fold()
(in
FcnCall
)
calculate_gutman_molecular_topological()
(in
schrodinger.application.moldescriptors
)
clear()
(in
Preferences
)
constant_fold()
(in
Node
)
calculate_gutman_mti_valence_vertex_degrees()
(in
schrodinger.application.moldescriptors
)
clear_all_tag()
(in
Sea
)
constants
(in
schrodinger.application.desmond.antlr3
)
calculate_harary()
(in
schrodinger.application.moldescriptors
)
clear_labels()
(in
schrodinger.application.bioluminate.pml_menus
)
constants
(in
schrodinger.application.jaguar
)
calculate_harmonic_topological()
(in
schrodinger.application.moldescriptors
)
clear_restrain()
(in
Cms
)
Constraint
(in
schrodinger.application.desmond.cms
)
calculate_hyper_distance_path()
(in
schrodinger.application.moldescriptors
)
clear_selection()
(in
Rama
)
Constraint
(in
schrodinger.application.glide.glide
)
calculate_in_place_rmsd()
(in
schrodinger.structutils.rmsd
)
clear_settings()
(in
WriteInputs
)
constraint()
(in
_FFIO
)
calculate_kier_alpha_modified_shape_1()
(in
schrodinger.application.moldescriptors
)
clearActions()
(in
Factory
)
constraint_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
calculate_kier_alpha_modified_shape_2()
(in
schrodinger.application.moldescriptors
)
clearGraph()
(in
Rama
)
ConstraintGroup
(in
schrodinger.application.glide.glide
)
calculate_kier_alpha_modified_shape_3()
(in
schrodinger.application.moldescriptors
)
clearReadErrors()
(in
FormatReader
)
consume()
(in
DebugTokenStream
)
calculate_kier_benzene_likeliness()
(in
schrodinger.application.moldescriptors
)
clearReadErrors()
(in
StructureReader
)
consume()
(in
ANTLRStringStream
)
calculate_kier_flexbility()
(in
schrodinger.application.moldescriptors
)
clearSelection()
(in
WidgetTable
)
consume()
(in
CommonTokenStream
)
calculate_kier_hall_electronegativity_index()
(in
schrodinger.application.moldescriptors
)
clearStructure()
(in
sketcher
)
consume()
(in
IntStream
)
calculate_looping_centric_index()
(in
schrodinger.application.moldescriptors
)
clearUmarker()
(in
CfgAtom
)
consume()
(in
CommonTreeNodeStream
)
calculate_lprs()
(in
schrodinger.application.moldescriptors
)
clearUmarker()
(in
Key
)
consume()
(in
TreePatternLexer
)
calculate_mean_distance_degree_deviation()
(in
schrodinger.application.moldescriptors
)
clearUmarker()
(in
List
)
consumeHiddenToken()
(in
DebugEventListener
)
calculate_mean_square_distance_balaban()
(in
schrodinger.application.moldescriptors
)
clearView()
(in
StrucListModel
)
consumeHiddenToken()
(in
DebugEventSocketProxy
)
calculate_mean_topological_charge_index_order_1()
(in
schrodinger.application.moldescriptors
)
clearWaterMapResidueOverlapping()
(in
sketcher
)
consumeInitialHiddenTokens()
(in
DebugTokenStream
)
calculate_mean_topological_charge_index_order_10()
(in
schrodinger.application.moldescriptors
)
clearWaterMapResidueSelected()
(in
sketcher
)
consumeNode()
(in
DebugEventListener
)
calculate_mean_topological_charge_index_order_2()
(in
schrodinger.application.moldescriptors
)
click()
(in
ClusterStatisticsPlotDialog
)
consumeNode()
(in
DebugEventSocketProxy
)
calculate_mean_topological_charge_index_order_3()
(in
schrodinger.application.moldescriptors
)
click()
(in
DendrogramPlotDialog
)
consumeNode()
(in
TraceDebugEventListener
)
calculate_mean_topological_charge_index_order_4()
(in
schrodinger.application.moldescriptors
)
click()
(in
DistanceMatrixPlotDialog
)
consumeToken()
(in
DebugEventListener
)
calculate_mean_topological_charge_index_order_5()
(in
schrodinger.application.moldescriptors
)
CLICKED
(in
schrodinger.application.bioluminate.protein_report_widget
)
consumeToken()
(in
DebugEventSocketProxy
)
calculate_mean_topological_charge_index_order_6()
(in
schrodinger.application.moldescriptors
)
CLIP
(in
schrodinger.protein.assignment
)
consumeUntil()
(in
BaseRecognizer
)
calculate_mean_topological_charge_index_order_7()
(in
schrodinger.application.moldescriptors
)
clone()
(in
Key
)
CONTACT_POS
(in
StructuralInteractionFingerprintGenerator
)
calculate_mean_topological_charge_index_order_8()
(in
schrodinger.application.moldescriptors
)
clone()
(in
Cut
)
CONTAINS
(in
schrodinger.application.bioluminate.propfilter
)
calculate_mean_topological_charge_index_order_9()
(in
schrodinger.application.moldescriptors
)
clone()
(in
HydrogenCap
)
contains()
(in
Preferences
)
calculate_mean_topological_charge_index_order_n()
(in
schrodinger.application.moldescriptors
)
clone()
(in
Map
)
contextMenuEvent()
(in
sketcher
)
calculate_mean_wiener()
(in
schrodinger.application.moldescriptors
)
CLOSABLE
(in
SequenceDockWidget
)
contextMenuEvent()
(in
sketcherGUIMultiColumnToolBar
)
calculate_menv()
(in
schrodinger.application.moldescriptors
)
close()
(in
ReportFrame
)
contextMenuEvent()
(in
sketcherView
)
calculate_mepv()
(in
schrodinger.application.moldescriptors
)
close()
(in
CanvasFingerprintClusterGUI
)
conv_bool()
(in
schrodinger.infra.propedit
)
calculate_mev()
(in
schrodinger.application.moldescriptors
)
close()
(in
ClusterStatisticsPlotDialog
)
conv_functions
(in
schrodinger.infra.propedit
)
calculate_modified_randic_connectivity()
(in
schrodinger.application.moldescriptors
)
close()
(in
DendrogramPlotDialog
)
conv_int()
(in
Zmat
)
calculate_molecule_cyclized_degree()
(in
schrodinger.application.moldescriptors
)
close()
(in
DistanceMatrixPlotDialog
)
conv_keys
(in
schrodinger.infra.propedit
)
calculate_mr1()
(in
schrodinger.application.moldescriptors
)
close()
(in
CanvasFingerprintGenerator
)
converge_search()
(in
schrodinger.application.macromodel.apps
)
calculate_mr2()
(in
schrodinger.application.moldescriptors
)
close()
(in
CMSReader
)
convergence_category()
(in
schrodinger.application.jaguar.output
)
calculate_mr3()
(in
schrodinger.application.moldescriptors
)
close()
(in
Reporter
)
conversion_strings
(in
schrodinger.application.lid.lid2d.schroutils
)
calculate_mr4()
(in
schrodinger.application.moldescriptors
)
close()
(in
XpDesWriter
)
convert
(in
schrodinger.application.vsw.stages
)
calculate_mr5()
(in
schrodinger.application.moldescriptors
)
close()
(in
MaestroReader
)
convert
(in
schrodinger.pipeline.stages
)
calculate_mr6()
(in
schrodinger.application.moldescriptors
)
close()
(in
MaestroTextReader
)
convert_color_list_to_bw()
(in
schrodinger.application.lid.lid2d.draw
)
calculate_mr7()
(in
schrodinger.application.moldescriptors
)
close()
(in
MaestroWriter
)
convert_color_to_bw()
(in
schrodinger.application.lid.lid2d.draw
)
calculate_mr8()
(in
schrodinger.application.moldescriptors
)
close()
(in
Mol2Reader
)
convert_ct_to_2d()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
calculate_njobs()
(in
schrodinger.job.jobcontrol
)
close()
(in
Mol2Writer
)
convert_mutation_file()
(in
Mutator
)
calculate_normalized_num_ring_systems()
(in
schrodinger.application.moldescriptors
)
close()
(in
PDBReader
)
convert_mutation_list()
(in
Mutator
)
calculate_num_ring_systems()
(in
schrodinger.application.moldescriptors
)
close()
(in
PDBWriter
)
convert_residue_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
calculate_path_walk_2()
(in
schrodinger.application.moldescriptors
)
close()
(in
SDReader
)
convert_selenomethionines()
(in
schrodinger.application.prepwizard
)
calculate_path_walk_3()
(in
schrodinger.application.moldescriptors
)
close()
(in
SDWriter
)
convert_sequence_for_pattern_search()
(in
schrodinger.protein.sequence
)
calculate_path_walk_4()
(in
schrodinger.application.moldescriptors
)
close()
(in
SmilesCsvWriter
)
convert_string()
(in
schrodinger.infra.mmim
)
calculate_path_walk_5()
(in
schrodinger.application.moldescriptors
)
close()
(in
SmilesWriter
)
convert_to_pos_dihedral()
(in
schrodinger.application.mcpro.perturbations
)
calculate_peoe1()
(in
schrodinger.application.moldescriptors
)
close()
(in
StructureReader
)
convertArrayToMatrix()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_peoe10()
(in
schrodinger.application.moldescriptors
)
close()
(in
StructureWriter
)
convertArrayToMatrixT()
(in
schrodinger.application.lid.lid2d.utils
)
calculate_peoe11()
(in
schrodinger.application.moldescriptors
)
close()
(in
MultiFileWriter
)
convertDataToPlot()
(in
MetaDynamicsAnalysis
)
calculate_peoe12()
(in
schrodinger.application.moldescriptors
)
closeBlockIfNecessary()
(in
Structure
)
convertPlotToData()
(in
MetaDynamicsAnalysis
)
calculate_peoe13()
(in
schrodinger.application.moldescriptors
)
closeBlockIfNecessary()
(in
TextualStructure
)
ConvertStage
(in
schrodinger.pipeline.stages.convert
)
calculate_peoe14()
(in
schrodinger.application.moldescriptors
)
closeDialog()
(in
AdvOptionsFrame
)
coords_frozen()
(in
schrodinger.application.jaguar.output
)
calculate_peoe2()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
ColorByElementSubMenu
)
coords_harmonic()
(in
schrodinger.application.jaguar.output
)
calculate_peoe3()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
ColorSubstructureSubMenu
)
coords_ind()
(in
schrodinger.application.jaguar.output
)
calculate_peoe4()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
RecentColorSubMenu
)
coords_nred()
(in
schrodinger.application.jaguar.output
)
calculate_peoe5()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
ResultsWindow
)
coords_opt()
(in
schrodinger.application.jaguar.output
)
calculate_peoe6()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
SequenceDockWidget
)
COPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
calculate_peoe7()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
_BaseAdvancedDialog
)
COPEN
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
calculate_peoe8()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
TwoDWidget
)
copy()
(in
PairDict
)
calculate_peoe9()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
AppFramework
)
copy()
(in
FFIOStructure
)
calculate_petitjean_shape()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
sketcher
)
copy()
(in
Structure
)
calculate_pogliani()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
sketcherGUIMultiColumnToolBar
)
copy()
(in
ColorScheme
)
calculate_polarity()
(in
schrodinger.application.moldescriptors
)
closeEvent()
(in
sketcherView
)
copy_from()
(in
_Evalor
)
calculate_qindex()
(in
schrodinger.application.moldescriptors
)
closePanel()
(in
ResultsWindow
)
copy_from()
(in
_Evalor
)
calculate_quasi_wiener()
(in
schrodinger.application.moldescriptors
)
closePanel()
(in
ReportFrame
)
copyalgn()
(in
ComUtil
)
calculate_radial_centric()
(in
schrodinger.application.moldescriptors
)
closePanel()
(in
AppFramework
)
copyOutputFile()
(in
_Backend
)
calculate_ramification()
(in
schrodinger.application.moldescriptors
)
closePanelS()
(in
App
)
copyProperty()
(in
schrodinger.infra.propedit
)
calculate_randic_connectivity()
(in
schrodinger.application.moldescriptors
)
closeWindow()
(in
SimplifiedSequenceViewer
)
copyProtein()
(in
liaison
)
calculate_reciprocal_distance_randic()
(in
schrodinger.application.moldescriptors
)
cluster
(in
schrodinger.application.canvas
)
copysign
(in
schrodinger.protein.assignment
)
calculate_reciprocal_distance_square_randic()
(in
schrodinger.application.moldescriptors
)
cluster()
(in
ProtAssign
)
corehop
(in
schrodinger.application.combiglide
)
calculate_reciprocal_hyper_distance_path()
(in
schrodinger.application.moldescriptors
)
clusterDM()
(in
CanvasFingerprintCluster
)
correct_restr()
(in
schrodinger.application.desmond.fepana
)
calculate_ring_bridge()
(in
schrodinger.application.moldescriptors
)
clusterFP()
(in
CanvasFingerprintCluster
)
correlation_type()
(in
schrodinger.application.jaguar.output
)
calculate_ring_complexity_index()
(in
schrodinger.application.moldescriptors
)
clustergui
(in
schrodinger.application.canvas
)
cos
(in
schrodinger.protein.assignment
)
calculate_ring_fusion_degree()
(in
schrodinger.application.moldescriptors
)
clustering_distance
(in
ProtAssign
)
cosh
(in
schrodinger.protein.assignment
)
calculate_ring_fusion_density()
(in
schrodinger.application.moldescriptors
)
ClusterStatisticsPlotDialog
(in
schrodinger.application.canvas.clustergui
)
count
(in
StatisticalSummary
)
calculate_ring_perimeter()
(in
schrodinger.application.moldescriptors
)
CluUtil
(in
schrodinger.application.macromodel.utils
)
count
(in
StageBase
)
calculate_ringcount()
(in
schrodinger.application.moldescriptors
)
cmd
(in
schrodinger.application.desmond.predict_remd_temp
)
count()
(in
schrodinger.application.macromodel.tools
)
calculate_ringcount10()
(in
schrodinger.application.moldescriptors
)
CMD
(in
AssignForcefield
)
count()
(in
Bitset
)
calculate_ringcount11()
(in
schrodinger.application.moldescriptors
)
CMD
(in
WaterMapCluster
)
count()
(in
Structures
)
calculate_ringcount12()
(in
schrodinger.application.moldescriptors
)
CMD
(in
WaterMapPostAnalysis
)
count_combinations()
(in
EnsembleSelection
)
calculate_ringcount13()
(in
schrodinger.application.moldescriptors
)
cmdline
(in
schrodinger.utils
)
count_good_ligs()
(in
EnsembleSelection
)
calculate_ringcount14()
(in
schrodinger.application.moldescriptors
)
cmdline_doc
(in
schrodinger.analysis.enrichment
)
count_phosphates_and_sulfurs()
(in
schrodinger.application.prepwizard
)
calculate_ringcount15()
(in
schrodinger.application.moldescriptors
)
cmj
(in
schrodinger.application.desmond
)
count_singletons()
(in
EnsembleSelection
)
calculate_ringcount16()
(in
schrodinger.application.moldescriptors
)
cmj_suffix_by_calc
(in
schrodinger.application.desmond.fep_gui
)
count_structures()
(in
schrodinger.structure
)
calculate_ringcount17()
(in
schrodinger.application.moldescriptors
)
cms
(in
schrodinger.application.desmond
)
CountAtoms
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_ringcount18()
(in
schrodinger.application.moldescriptors
)
Cms
(in
schrodinger.application.desmond.cms
)
countCommonOff()
(in
CanvasFingerprint
)
calculate_ringcount19()
(in
schrodinger.application.moldescriptors
)
cms_file
(in
ProjectRow
)
countCommonOn()
(in
CanvasFingerprint
)
calculate_ringcount20()
(in
schrodinger.application.moldescriptors
)
cms_fname
(in
schrodinger.application.desmond.fepana
)
Counter
(in
schrodinger.application.desmond.util
)
calculate_ringcount3()
(in
schrodinger.application.moldescriptors
)
cms_structure_reader
(in
ProjectRow
)
Counter
(in
schrodinger.ui.widget.pmwwidget
)
calculate_ringcount4()
(in
schrodinger.application.moldescriptors
)
CmsModel
(in
schrodinger.application.desmond.meta
)
countRoots()
(in
schrodinger.pipeline.pipeutils
)
calculate_ringcount5()
(in
schrodinger.application.moldescriptors
)
CMSReader
(in
schrodinger.application.desmond.ffiostructure
)
cout
(in
schrodinger.infra.mm
)
calculate_ringcount6()
(in
schrodinger.application.moldescriptors
)
cmsstructure
(in
schrodinger.trajectory
)
COVALENT_RADIUS
(in
schrodinger.application.moldescriptors
)
calculate_ringcount7()
(in
schrodinger.application.moldescriptors
)
CmsStructure
(in
schrodinger.trajectory.cmsstructure
)
CovarianceMatrix
(in
schrodinger.trajectory.analysis
)
calculate_ringcount8()
(in
schrodinger.application.moldescriptors
)
CO
(in
schrodinger.pipeline.stages.filtering
)
CPK
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_ringcount9()
(in
schrodinger.application.moldescriptors
)
collapsed
(in
EntryGroup
)
cpus3Edited()
(in
StartDialog
)
calculate_second_mohar()
(in
schrodinger.application.moldescriptors
)
collect_inputfile()
(in
schrodinger.application.desmond.cmj
)
CpuValidator
(in
schrodinger.application.desmond.cwidget
)
calculate_simple_topological()
(in
schrodinger.application.moldescriptors
)
collect_inputfile()
(in
Multisim
)
create()
(in
TreeAdaptor
)
calculate_smt()
(in
schrodinger.application.moldescriptors
)
COLON
(in
schrodinger.application.desmond.antlr3.treewizard
)
create()
(in
TreeWizard
)
calculate_smt_valence_vertex_degree()
(in
schrodinger.application.moldescriptors
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
create()
(in
sketcher
)
calculate_solvation_connectivity_indices_0()
(in
schrodinger.application.moldescriptors
)
COLON
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
create()
(in
sketcherGUIMultiColumnToolBar
)
calculate_solvation_connectivity_indices_1()
(in
schrodinger.application.moldescriptors
)
color
(in
_StructureAtom
)
create()
(in
sketcherView
)
calculate_solvation_connectivity_indices_2()
(in
schrodinger.application.moldescriptors
)
color
(in
schrodinger.structutils
)
create_action_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_solvation_connectivity_indices_3()
(in
schrodinger.application.moldescriptors
)
Color
(in
schrodinger.structutils.color
)
create_adjacent_list()
(in
Perturbations
)
calculate_solvation_connectivity_indices_4()
(in
schrodinger.application.moldescriptors
)
color_arg_to_rgb()
(in
schrodinger.graphics3d.common
)
create_atom_tag()
(in
Workspace
)
calculate_solvation_connectivity_indices_5()
(in
schrodinger.application.moldescriptors
)
color_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
create_bonds_checked_string()
(in
schrodinger.application.lid.lid2d.rotate
)
calculate_spanning_tree_number()
(in
schrodinger.application.moldescriptors
)
color_atoms_rgb()
(in
schrodinger.application.bioluminate.pml_menus
)
create_cms_from_mae()
(in
schrodinger.application.desmond.repair_cms
)
calculate_square_reciprocal_distance_sum()
(in
schrodinger.application.moldescriptors
)
color_by_element()
(in
schrodinger.application.bioluminate.pml_menus
)
create_colorbyele_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_stats()
(in
PoseLibrary
)
color_chainbow_groups()
(in
schrodinger.application.bioluminate.pml_menus
)
create_cone()
(in
schrodinger.maestro.maestro
)
calculate_sum_of_topological_distances_between_Br_and_Br()
(in
schrodinger.application.moldescriptors
)
COLOR_CODE
(in
schrodinger.application.desmond.gchart
)
create_contour_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
calculate_sum_of_topological_distances_between_Br_and_I()
(in
schrodinger.application.moldescriptors
)
COLOR_DEFAULT
(in
schrodinger.graphics3d.polyhedron
)
create_cylinder()
(in
schrodinger.maestro.maestro
)
calculate_sum_of_topological_distances_between_Cl_and_Br()
(in
schrodinger.application.moldescriptors
)
color_dict
(in
schrodinger.application.bioluminate.pml_menus
)
create_disulfide_bonds()
(in
schrodinger.application.prepwizard
)
calculate_sum_of_topological_distances_between_Cl_and_Cl()
(in
schrodinger.application.moldescriptors
)
color_file
(in
schrodinger.application.bioluminate.pml_menus
)
create_entry_from_workspace()
(in
schrodinger.maestro.maestro
)
calculate_sum_of_topological_distances_between_Cl_and_I()
(in
schrodinger.application.moldescriptors
)
COLOR_NAME
(in
schrodinger.application.bioluminate.sliderchart
)
create_full_system_from_comp()
(in
schrodinger.application.desmond.repair_cms
)
calculate_sum_of_topological_distances_between_F_and_Br()
(in
schrodinger.application.moldescriptors
)
COLOR_NAME
(in
schrodinger.application.desmond.gchart
)
create_hard_link()
(in
schrodinger.utils.fileutils
)
calculate_sum_of_topological_distances_between_F_and_Cl()
(in
schrodinger.application.moldescriptors
)
COLOR_NAME
(in
schrodinger.application.desmond.mplchart
)
create_hide_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_F_and_F()
(in
schrodinger.application.moldescriptors
)
color_path
(in
schrodinger.application.bioluminate.pml_menus
)
create_hybrid()
(in
hbond_cluster
)
calculate_sum_of_topological_distances_between_F_and_I()
(in
schrodinger.application.moldescriptors
)
COLOR_SEQUENCES
(in
schrodinger.application.bioluminate.actions.configs
)
create_hypoFiles
(in
schrodinger.application.phase.hypothesis
)
calculate_sum_of_topological_distances_between_I_and_I()
(in
schrodinger.application.moldescriptors
)
colorAtoms()
(in
AutoColorObjects
)
create_hypoTabFile
(in
schrodinger.application.phase.hypothesis
)
calculate_sum_of_topological_distances_between_N_and_Br()
(in
schrodinger.application.moldescriptors
)
colorAtoms()
(in
AutoCycleColor
)
create_label_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_N_and_Cl()
(in
schrodinger.application.moldescriptors
)
colorAtoms()
(in
RegionInfo
)
create_modify_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_N_and_F()
(in
schrodinger.application.moldescriptors
)
ColorAtomsByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_mpl_plot_on_figure()
(in
schrodinger.application.desmond.mplchart
)
calculate_sum_of_topological_distances_between_N_and_I()
(in
schrodinger.application.moldescriptors
)
ColorAtomsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_new_structure()
(in
schrodinger.structure
)
calculate_sum_of_topological_distances_between_N_and_N()
(in
schrodinger.application.moldescriptors
)
ColorByElementSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
create_normal()
(in
schrodinger.graphics3d.common
)
calculate_sum_of_topological_distances_between_N_and_O()
(in
schrodinger.application.moldescriptors
)
colorByRMSD()
(in
SiteMatchLookup
)
create_polyhedron()
(in
schrodinger.maestro.maestro
)
calculate_sum_of_topological_distances_between_N_and_P()
(in
schrodinger.application.moldescriptors
)
ColorBySubstructure
(in
schrodinger.application.bioluminate.pml_menus
)
CREATE_RADIOBUTTON_NAMES
(in
CanvasFingerprintClusterGUI
)
calculate_sum_of_topological_distances_between_N_and_S()
(in
schrodinger.application.moldescriptors
)
ColorCalphasByBFactor
(in
schrodinger.application.bioluminate.pml_menus
)
create_show_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_O_and_Br()
(in
schrodinger.application.moldescriptors
)
ColorCalphasBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_show_organic_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_O_and_Cl()
(in
schrodinger.application.moldescriptors
)
ColorCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
create_show_substructure_menu()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_O_and_F()
(in
schrodinger.application.moldescriptors
)
ColorCarbonsBySpectrum
(in
schrodinger.application.bioluminate.pml_menus
)
create_simulation()
(in
schrodinger.trajectory.desmondsimulation
)
calculate_sum_of_topological_distances_between_O_and_I()
(in
schrodinger.application.moldescriptors
)
colorCB_changed()
(in
App
)
create_sphere()
(in
schrodinger.maestro.maestro
)
calculate_sum_of_topological_distances_between_O_and_O()
(in
schrodinger.application.moldescriptors
)
ColorChainbows
(in
schrodinger.application.bioluminate.pml_menus
)
create_surface()
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_O_and_P()
(in
schrodinger.application.moldescriptors
)
ColorChains
(in
schrodinger.application.bioluminate.pml_menus
)
create_surface_on_figure()
(in
schrodinger.application.desmond.mplchart
)
calculate_sum_of_topological_distances_between_O_and_S()
(in
schrodinger.application.moldescriptors
)
colorChains()
(in
ColorChains
)
create_zmat()
(in
Zmat
)
calculate_sum_of_topological_distances_between_P_and_Br()
(in
schrodinger.application.moldescriptors
)
ColorChainsByCalpha
(in
schrodinger.application.bioluminate.pml_menus
)
createActions()
(in
Factory
)
calculate_sum_of_topological_distances_between_P_and_Cl()
(in
schrodinger.application.moldescriptors
)
ColorChainsByCarbon
(in
schrodinger.application.bioluminate.pml_menus
)
createAlignFile()
(in
PrimeStructure
)
calculate_sum_of_topological_distances_between_P_and_F()
(in
schrodinger.application.moldescriptors
)
ColorChainSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createCell()
(in
_Column
)
calculate_sum_of_topological_distances_between_P_and_I()
(in
schrodinger.application.moldescriptors
)
ColorChooserPanel
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
EditableDelegate
)
calculate_sum_of_topological_distances_between_P_and_P()
(in
schrodinger.application.moldescriptors
)
colorfile
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
ResiduesDelegate
)
calculate_sum_of_topological_distances_between_S_and_Br()
(in
schrodinger.application.moldescriptors
)
ColorHNOS
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
AtomGroupDelegate
)
calculate_sum_of_topological_distances_between_S_and_Cl()
(in
schrodinger.application.moldescriptors
)
ColorHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
PosResDelegate
)
calculate_sum_of_topological_distances_between_S_and_F()
(in
schrodinger.application.moldescriptors
)
ColorLabel
(in
schrodinger.application.bioluminate.pml_menus
)
createEditor()
(in
TempItemDelegate
)
calculate_sum_of_topological_distances_between_S_and_I()
(in
schrodinger.application.moldescriptors
)
ColorMenu
(in
schrodinger.application.bioluminate.pml_menus
)
CreateEntry
(in
schrodinger.application.bioluminate.pml_menus
)
calculate_sum_of_topological_distances_between_S_and_P()
(in
schrodinger.application.moldescriptors
)
ColorObject
(in
schrodinger.application.bioluminate.pml_menus
)
createFamilies()
(in
PropertySelector
)
calculate_sum_of_topological_distances_between_S_and_S()
(in
schrodinger.application.moldescriptors
)
colorpath
(in
schrodinger.application.bioluminate.pml_menus
)
createFiles()
(in
liaison
)
calculate_superpendentic()
(in
schrodinger.application.moldescriptors
)
ColorRecentCarbons
(in
schrodinger.application.bioluminate.pml_menus
)
createFromToken()
(in
DebugTreeAdaptor
)
calculate_topological_charge_index_order_1()
(in
schrodinger.application.moldescriptors
)
ColorRecentHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
createFromToken()
(in
BaseTreeAdaptor
)
calculate_topological_charge_index_order_10()
(in
schrodinger.application.moldescriptors
)
ColorRecentObjects
(in
schrodinger.application.bioluminate.pml_menus
)
createFromToken()
(in
TreeAdaptor
)
calculate_topological_charge_index_order_2()
(in
schrodinger.application.moldescriptors
)
ColorRibbonMixin
(in
schrodinger.application.bioluminate.pml_menus
)
createFromType()
(in
DebugTreeAdaptor
)
calculate_topological_charge_index_order_3()
(in
schrodinger.application.moldescriptors
)
ColorScheme
(in
schrodinger.structutils.color
)
createFromType()
(in
BaseTreeAdaptor
)
calculate_topological_charge_index_order_4()
(in
schrodinger.application.moldescriptors
)
ColorSpectrumSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createFromType()
(in
TreeAdaptor
)
calculate_topological_charge_index_order_5()
(in
schrodinger.application.moldescriptors
)
ColorSubstructureSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
createGlideInput()
(in
Complex
)
calculate_topological_charge_index_order_6()
(in
schrodinger.application.moldescriptors
)
colPos()
(in
_Cell
)
createImportWidget()
(in
ImportWidget
)
calculate_topological_charge_index_order_7()
(in
schrodinger.application.moldescriptors
)
colPos()
(in
_Column
)
createIndexSelection()
(in
FrameAslSelection
)
calculate_topological_charge_index_order_8()
(in
schrodinger.application.moldescriptors
)
column
(in
WidgetTable
)
createLabel()
(in
FrameworkTemplate
)
calculate_topological_charge_index_order_9()
(in
schrodinger.application.moldescriptors
)
column_classes
(in
schrodinger.ui.widgettable
)
createLabel()
(in
FrameworkTemplate
)
calculate_topological_charge_index_order_n()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
DataModel
)
createMenus()
(in
AppFramework
)
calculate_topological_diameter()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
PathModel
)
createMenus()
(in
AppFramework
)
calculate_topological_radius()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
ResiduesModel
)
createNode()
(in
DebugEventListener
)
calculate_total_ring_size()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
StrucListModel
)
createNode()
(in
DebugEventSocketProxy
)
calculate_total_structure_connectivity()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
AtomGroupModel
)
createNode()
(in
TraceDebugEventListener
)
calculate_unipolarity()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
PosResModel
)
createSequence()
(in
FrameworkTemplate
)
calculate_using_file()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
TableModel
)
createSequence()
(in
FrameworkTemplate
)
calculate_using_st()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
ChooseLigandModel
)
createSequence()
(in
SimplifiedSequenceViewer
)
calculate_valence_connectivity_chi_0()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
ChooseLigandModel
)
createSharedArray()
(in
MultiprocessingModel
)
calculate_valence_connectivity_chi_1()
(in
schrodinger.application.moldescriptors
)
columnCount()
(in
PatternModel
)
createSharedArray()
(in
ThreadingModel
)
calculate_valence_connectivity_chi_2()
(in
schrodinger.application.moldescriptors
)
columnGetDataName()
(in
Table
)
createStage()
(in
Pipeline
)
calculate_valence_connectivity_chi_3()
(in
schrodinger.application.moldescriptors
)
columnGetDataType()
(in
Table
)
createTemplateFile()
(in
PrimeStructure
)
calculate_valence_connectivity_chi_4()
(in
schrodinger.application.moldescriptors
)
columnGetName()
(in
Table
)
createTextSequence()
(in
AntibodyPreset
)
calculate_valence_connectivity_chi_5()
(in
schrodinger.application.moldescriptors
)
columnGetPersistent()
(in
Table
)
createTip4pFfio()
(in
WaterMapInput
)
calculate_van_der_waals_surface_area()
(in
schrodinger.application.moldescriptors
)
columnGetProperty()
(in
Table
)
createToken()
(in
BaseTreeAdaptor
)
calculate_variation()
(in
schrodinger.application.moldescriptors
)
columnGetVisible()
(in
Table
)
createToken()
(in
CommonTreeAdaptor
)
calculate_wiener()
(in
schrodinger.application.moldescriptors
)
columnGetWidth()
(in
Table
)
createVectorAtoms()
(in
Membrane_Model
)
calculate_wiener_electronegativity_matrix()
(in
schrodinger.application.moldescriptors
)
ColumnIterator
(in
schrodinger.ui.widgettable
)
CreateWhenNeeded
(in
schrodinger.infra.util
)
calculate_wiener_mass_matrix()
(in
schrodinger.application.moldescriptors
)
ColumnSelectDialog
(in
schrodinger.antibody_db_manage_gui
)
createWithPayload()
(in
DebugTreeAdaptor
)
calculate_wiener_polarizability_matrix()
(in
schrodinger.application.moldescriptors
)
columnSetName()
(in
Table
)
createWithPayload()
(in
CommonTreeAdaptor
)
calculate_wiener_van_der_waals_matrix()
(in
schrodinger.application.moldescriptors
)
columnSetPersistent()
(in
Table
)
createWithPayload()
(in
TreeAdaptor
)
calculate_wiener_z_matrix()
(in
schrodinger.application.moldescriptors
)
columnSetProperty()
(in
Table
)
createWithPayload()
(in
TreePatternTreeAdaptor
)
calculate_xu()
(in
schrodinger.application.moldescriptors
)
columnSetVisible()
(in
Table
)
createWorker()
(in
ModelBase
)
calculate_zagreb_m1()
(in
schrodinger.application.moldescriptors
)
columnSetWidth()
(in
Table
)
CriteriaListModel
(in
schrodinger.application.bioluminate.propfilter
)
calculate_zagreb_m1_valence_vertex_degree()
(in
schrodinger.application.moldescriptors
)
combiglide
(in
schrodinger.application
)
CriteriaListModel
(in
schrodinger.ui.ligfilter
)
calculate_zagreb_m2()
(in
schrodinger.application.moldescriptors
)
COMBIGLIDE
(in
schrodinger.infra.mm
)
Criterion
(in
schrodinger.utils.ligfilter
)
calculate_zagreb_m2_valence_vertex_degree()
(in
schrodinger.application.moldescriptors
)
COMBIGLIDE
(in
schrodinger.utils.preferences
)
CriterionParser
(in
schrodinger.utils.ligfilter
)
calculateAverageDipole()
(in
WaterMapAnaJob
)
COMBIGLIDE_CORE_HOPPING
(in
schrodinger.infra.licensing
)
CRITICAL
(in
schrodinger.utils.log
)
calculateMatrix()
(in
BindingSiteAligner
)
COMBIGLIDE_MAIN
(in
schrodinger.infra.licensing
)
CROSS_LINK
(in
SystemBuilder
)
calculateMembraneBox()
(in
Membrane_Model
)
combinations()
(in
EnsembleSelection
)
crossprod()
(in
schrodinger.application.desmond.cms
)
calculateMetrics()
(in
Calculator
)
combine
(in
schrodinger.application.vsw.stages
)
crossprod()
(in
schrodinger.application.desmond.mdkey
)
calculateOverResidues()
(in
PropertyCalculator
)
combine
(in
schrodinger.pipeline.stages
)
crossProduct2d()
(in
schrodinger.application.lid.lid2d.utils
)
calculateSimilarity()
(in
CanvasFingerprintSimilarity
)
combine_vdw()
(in
schrodinger.application.desmond.cms
)
crunch()
(in
StageBase
)
calculateVolume()
(in
DesmondBoxSize
)
combineFollows()
(in
BaseRecognizer
)
crunch()
(in
Analysis
)
calculateWaterMapDensity()
(in
WaterMapAnaJob
)
CombineStage
(in
schrodinger.pipeline.stages.combine
)
crunch()
(in
AssignForcefield
)
Calculator
(in
schrodinger.analysis.enrichment
)
combining_rule
(in
_FFIO
)
crunch()
(in
BuildGeometry
)
call()
(in
schrodinger.utils.subprocess
)
COMBOBOX
(in
Table
)
crunch()
(in
Extern
)
callback
(in
TextParser
)
ComboBox
(in
schrodinger.ui.widget.pmwwidget
)
crunch()
(in
FepAnalysis
)
callback
(in
QSiteTextParser
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
crunch()
(in
FepVrun
)
callback()
(in
schrodinger.application.jaguar.output
)
COMMA
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
crunch()
(in
LambdaHopping
)
callback()
(in
schrodinger.application.qsite.output
)
command()
(in
AddHydrogens
)
crunch()
(in
McproSimulate
)
CALPHA_SCHEME
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
AntibodyPreset
)
crunch()
(in
McproSystemBuilder
)
CANCEL
(in
StartDialog
)
command()
(in
Around
)
crunch()
(in
Multisim
)
CANCEL
(in
StartDialog
)
command()
(in
AutoColorCarbons
)
crunch()
(in
Simulate
)
cancelPressed()
(in
AdvOptionsFrame
)
command()
(in
AutoColorObjects
)
crunch()
(in
SolvatePocket
)
cancelSubmitted()
(in
BaseJob
)
command()
(in
AutoCycleCarbonColor
)
crunch()
(in
Stop
)
cancelSubmitted()
(in
JobControlJob
)
command()
(in
AutoCycleColor
)
crunch()
(in
SystemBuilder
)
cannotDeleteAction()
(in
ActiveDatabaseTable
)
command()
(in
BAndSPreset
)
crunch()
(in
Task
)
canon_from_ct
(in
schrodinger.infra.mm
)
command()
(in
BFactorPreset
)
crunch()
(in
Trajectory
)
canonicalize()
(in
schrodinger.application.desmond.config
)
command()
(in
Center
)
crunch()
(in
Trim
)
canonicalize()
(in
SmilesGenerator
)
command()
(in
Clean
)
crunch()
(in
Vrun
)
canonicalize_key()
(in
schrodinger.job.hunt_cache
)
command()
(in
ColorAtomsByBFactor
)
crunch()
(in
WaterMap
)
canorb()
(in
schrodinger.application.jaguar.output
)
command()
(in
ColorAtomsBySpectrum
)
crunch()
(in
WaterMapCluster
)
canvas
(in
schrodinger.application
)
command()
(in
ColorBySubstructure
)
crunch()
(in
WaterMapPostAnalysis
)
CANVAS
(in
schrodinger.infra.mm
)
command()
(in
ColorCalphasByBFactor
)
CSIDL
(in
schrodinger.utils.fileutils
)
canvas
(in
schrodinger.structure
)
command()
(in
ColorCalphasBySpectrum
)
csv_file_ext
(in
Calculator
)
Canvas
(in
schrodinger.ui.widget.tkinterwidget
)
command()
(in
ColorCarbons
)
CT
(in
AslValidator
)
CANVAS
(in
schrodinger.utils.preferences
)
command()
(in
ColorCarbonsBySpectrum
)
ct
(in
schrodinger.application.desmond.ffiostructure
)
CANVAS_ELEMENTS
(in
schrodinger.infra.licensing
)
command()
(in
ColorChainbows
)
ct
(in
Workspace
)
CANVAS_FULL
(in
schrodinger.infra.licensing
)
command()
(in
ColorChains
)
CT
(in
schrodinger.structutils.rmsd
)
CANVAS_LIC
(in
schrodinger.application.moldescriptors
)
command()
(in
ColorChainsByCalpha
)
ctATOMICAVG
(in
schrodinger.application.jaguar.output
)
canvas_license
(in
schrodinger.application.medchem.property
)
command()
(in
ColorChainsByCarbon
)
ctDFT
(in
schrodinger.application.jaguar.output
)
CANVAS_MAIN
(in
schrodinger.infra.licensing
)
command()
(in
ColorHNOS
)
ctGVB
(in
schrodinger.application.jaguar.output
)
CANVAS_SHARED
(in
schrodinger.infra.licensing
)
command()
(in
ColorHydrogens
)
ctGVBLMP2
(in
schrodinger.application.jaguar.output
)
CanvasCell
(in
schrodinger.ui.widgettable
)
command()
(in
ColorObject
)
ctGVBRCI
(in
schrodinger.application.jaguar.output
)
CanvasColumn
(in
schrodinger.ui.widgettable
)
command()
(in
ColorRecentCarbons
)
ctHF
(in
schrodinger.application.jaguar.output
)
CanvasFingerprint
(in
schrodinger.application.canvas.fingerprint
)
command()
(in
ColorRecentHydrogens
)
ctLMP2
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintCluster
(in
schrodinger.application.canvas.cluster
)
command()
(in
ColorRecentObjects
)
ctNDDO
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintClusterCLI
(in
schrodinger.application.canvas.cluster
)
command()
(in
ComputeSurfaceArea
)
CtObj
(in
ModelSystem
)
CanvasFingerprintClusterGUI
(in
schrodinger.application.canvas.clustergui
)
command()
(in
CountAtoms
)
ctOSS
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintGenerator
(in
schrodinger.application.canvas.fingerprint
)
command()
(in
CreateEntry
)
ctRODFT
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintGeneratorCLI
(in
schrodinger.application.canvas.fingerprint
)
command()
(in
DefaultPreset
)
ctROHF
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintGeneratorGUI
(in
schrodinger.application.canvas.fingerprintgui
)
command()
(in
DeleteAll
)
ctROHFLMP2
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintSimilarity
(in
schrodinger.application.canvas.similarity
)
command()
(in
DeleteAtoms
)
CTSTR
(in
AslValidator
)
CanvasFingerprintSimilarityCLI
(in
schrodinger.application.canvas.similarity
)
command()
(in
DeleteProject
)
ctUDFT
(in
schrodinger.application.jaguar.output
)
CanvasFingerprintSimilarityGUI
(in
schrodinger.application.canvas.similaritygui
)
command()
(in
DeleteSelections
)
ctUHF
(in
schrodinger.application.jaguar.output
)
CanvasSimilarityNotImplemented
(in
schrodinger.application.canvas.similarity
)
command()
(in
DeleteWS
)
ctUSER
(in
schrodinger.application.jaguar.output
)
canvasutils
(in
schrodinger.structure
)
command()
(in
Disable
)
Cube
(in
schrodinger.graphics3d.polyhedron
)
cap_termini()
(in
schrodinger.protein.captermini
)
command()
(in
Duplicate
)
currentTabChanged()
(in
_App
)
CAPC
(in
schrodinger.protein.captermini
)
command()
(in
ExcludeFromSelection
)
currentTabChanged()
(in
_BaseAdvancedDialog
)
CAPN
(in
schrodinger.protein.captermini
)
command()
(in
ExcludeInorganicFromSelection
)
curselection()
(in
MultiListbox
)
cappedResidues()
(in
CapTermini
)
command()
(in
ExcludeOrganicFromSelection
)
CursorAction
capResidues()
(in
CapTermini
)
command()
(in
ExcludePolymerFromSelection
)
custom_color_dicts
(in
schrodinger.application.bioluminate.pml_menus
)
captermini
(in
schrodinger.protein
)
command()
(in
ExcludeSolventFromSelection
)
custom_is_list()
(in
schrodinger.application.inputconfig
)
CapTermini
(in
schrodinger.protein.captermini
)
command()
(in
ExcludeVisibleFromSelection
)
custom_is_string_list()
(in
schrodinger.application.inputconfig
)
CAPTION
(in
SequenceFileDialog
)
command()
(in
Expand
)
CustomColor
(in
schrodinger.application.bioluminate.pml_menus
)
capture()
(in
StageBase
)
command()
(in
Extend
)
customEvent()
(in
sketcher
)
CARBON_COLOR
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
FakeMaestro
)
customEvent()
(in
sketcherGUIMultiColumnToolBar
)
carboxyl_changeable
(in
ProtAssign
)
command()
(in
GenerateInterfaceSelection
)
customEvent()
(in
sketcherView
)
CARTOON
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
GenerateLigandSelection
)
CustomProgressBar
(in
schrodinger.ui.qt.appframework
)
CaseInsensitiveString
(in
schrodinger.application.jaguar.output
)
command()
(in
GenerateSelection
)
CustomRecentColor
(in
schrodinger.application.bioluminate.pml_menus
)
cast
(in
schrodinger.protein.assignment
)
command()
(in
GenerateSurfResSelection
)
Cut
(in
schrodinger.application.qsite.input
)
catch_last_added()
(in
schrodinger.application.bioluminate.ssv.viewer
)
command()
(in
GenerateSymmetryMates
)
cut_line_in_rectangle()
(in
schrodinger.application.lid.lid2d.utils
)
cation_coordinates()
(in
schrodinger.structutils.interactions
)
command()
(in
HideAllOthers
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
CationPiInteraction
(in
schrodinger.structutils.interactions
)
command()
(in
HideAtoms
)
CUTOFF
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
catOpText()
(in
TokenRewriteStream
)
command()
(in
HideEverything
)
CV
(in
schrodinger.application.desmond.meta
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
command()
(in
HideHydrogens
)
CVAngle
(in
schrodinger.application.desmond.meta
)
CCLOSE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
command()
(in
HideLabel
)
cvangle_grp_template
(in
CVAngle
)
ceil
(in
schrodinger.protein.assignment
)
command()
(in
HideMainChain
)
cvangle_template
(in
CVAngle
)
cell
(in
WidgetTable
)
command()
(in
HideNonBonded
)
CVDihedral
(in
schrodinger.application.desmond.meta
)
cell
(in
_Column
)
command()
(in
HidePolarHydrogens
)
cvdihedral_grp_template
(in
CVDihedral
)
cell
(in
_Row
)
command()
(in
HideRibbons
)
cvdihedral_template
(in
CVDihedral
)
cellClearData()
(in
Table
)
command()
(in
HideSideChain
)
CVDist
(in
schrodinger.application.desmond.meta
)
cellHasData()
(in
Table
)
command()
(in
HideSurface
)
cvdist_floor_template
(in
CVDist
)
CellIterator
(in
schrodinger.ui.widgettable
)
command()
(in
HideSymmetryMates
)
cvdist_grp_template
(in
CVDist
)
Center
(in
schrodinger.application.bioluminate.pml_menus
)
command()
(in
HideWaters
)
cvdist_template
(in
CVDist
)
CenterOfMass
(in
schrodinger.trajectory.analysis
)
command()
(in
IncludeInSelection
)
cvdist_wall_template
(in
CVDist
)
CenterOfMotion
(in
schrodinger.trajectory.analysis
)
command()
(in
IncludeVisibleInSelection
)
CVrmsd
(in
schrodinger.application.desmond.meta
)
centroid
(in
Ligand
)
command()
(in
InterfacePreset
)
cvrmsd_template
(in
CVrmsd
)
Centroid
(in
schrodinger.structutils.interactions
)
command()
(in
LabelAtom
)
CVzdist0
(in
schrodinger.application.desmond.meta
)
cerr
(in
schrodinger.infra.mm
)
command()
(in
LabelAtomByProp
)
cvzdist0_template
(in
CVzdist0
)
cfg
(in
schrodinger.application.desmond.config
)
command()
(in
LabelAtomByStereo
)
cwidget
(in
schrodinger.application.desmond
)
cfg_file()
(in
JobInput
)
command()
(in
LabelChains
)
CYAN
(in
schrodinger.application.bioluminate.pml_menus
)
CFG_PATTERN
(in
schrodinger.application.desmond.mdkey
)
command()
(in
LabelResidues
)
cycle()
(in
LoadingIcon
)
CfgAtom
(in
schrodinger.application.desmond.mdkey
)
command()
(in
LigandPreset
)
CGCOREHOP_PC_COREINDEX
(in
schrodinger.infra.mm
)
command()
(in
MAction
)
Home
Trees
Indices
Help
Suite 2012 Schrodinger Python API
Generated by Epydoc 3.0.1 on Thu Mar 29 12:42:50 2012
http://epydoc.sourceforge.net