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Suite 2012 Schrodinger Python API
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Identifier Index
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A
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E
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_
]
G
g
(in
MaestroArrow
)
getBeta()
(in
CanvasFingerprintSimilarity
)
getSeparationRatioList()
(in
CanvasFingerprintCluster
)
g
(in
MaestroSphere
)
getBitset()
(in
CanvasFingerprint
)
getSeqStructure()
(in
SimplifiedSequenceViewer
)
gamma_Bfactor_data_set
(in
Report
)
getBlock()
(in
XpDesReader
)
getSimHistogramByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
gamma_polar()
(in
schrodinger.application.jaguar.output
)
getBond()
(in
Structure
)
getSimilarityMetricDescription()
(in
CanvasFingerprintSimilarityCLI
)
gamma_polar_precision
(in
JaguarResults
)
getBondedEnergies()
(in
Minimizer
)
getSMARTSFromSelection()
(in
AddDefinitionDialog
)
gap_penalty
(in
StructAlign
)
getBondedEnergyComponents()
(in
Minimizer
)
getSmiles()
(in
SmilesGenerator
)
GATES
(in
schrodinger.utils.ligfilter
)
getBondedInteractionEnergy()
(in
Minimizer
)
getSmilesAndMap()
(in
SmilesGenerator
)
gather_rings()
(in
schrodinger.structutils.interactions
)
getBondersForAromaticRing()
(in
AssignBondOrders
)
getSourceName()
(in
DebugTokenStream
)
gaussian_filter
(in
schrodinger.application.desmond
)
getBoxVectors()
(in
DesmondBoxSize
)
getSourceName()
(in
BaseRecognizer
)
GaussianFilter
(in
schrodinger.application.desmond.gaussian_filter
)
getCalculationGUI()
(in
CanvasFingerprintSimilarityGUI
)
getSourceName()
(in
Lexer
)
gb
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
getCategory()
(in
HomologyRama
)
getSourceName()
(in
Parser
)
gchart
(in
schrodinger.application.desmond
)
getCell()
(in
_Column
)
getSourceName()
(in
ANTLRFileStream
)
GEMINAL_FLUORINES
(in
schrodinger.structutils.interactions
)
getCell()
(in
_Row
)
getSourceName()
(in
ANTLRStringStream
)
gen
(in
QSiteInput
)
getCellDiff()
(in
_DesmondFrame
)
getSourceName()
(in
CommonTokenStream
)
gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
getCenterOrientationOfAtoms()
(in
Membrane_Model
)
getSourceName()
(in
IntStream
)
gen_charges()
(in
schrodinger.application.jaguar.output
)
getChain()
(in
_StructureAtom
)
getSourceName()
(in
CommonTreeNodeStream
)
gen_key()
(in
schrodinger.application.desmond.mdkey
)
getChainAtoms()
(in
Structure
)
getSourceName()
(in
TreeParser
)
gen_mcpro_command()
(in
ModelSystem
)
getChannel()
(in
ClassicToken
)
getSpecsString()
(in
InputConfig
)
gen_model_sys()
(in
McproSystemBuilder
)
getChannel()
(in
CommonToken
)
getStageByJobid()
(in
Pipeline
)
gen_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getChannel()
(in
Token
)
getStageDirectory()
(in
Stage
)
gen_reordered_ct()
(in
schrodinger.application.mcpro.perturbations
)
getCharErrorDisplay()
(in
Lexer
)
getStart()
(in
ParserRuleReturnScope
)
gen_replica()
(in
schrodinger.application.desmond.config
)
getCharIndex()
(in
Lexer
)
getStart()
(in
RuleReturnScope
)
gen_restraint()
(in
SystemBuilder
)
getCharPositionInLine()
(in
Lexer
)
getStart()
(in
TreeRuleReturnScope
)
gen_temperature_for_solute_tempering()
(in
schrodinger.application.desmond.config
)
getCharPositionInLine()
(in
ANTLRStringStream
)
getStatusStrings()
(in
BaseJob
)
gen_test()
(in
schrodinger.application.desmond.simulation_block_test
)
getCharPositionInLine()
(in
CharStream
)
getStatusStrings()
(in
JobControlJob
)
genAllJobs()
(in
BaseJob
)
getCharPositionInLine()
(in
ClassicToken
)
getStdSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
genAllPrereqs()
(in
BaseJob
)
getCharPositionInLine()
(in
CommonToken
)
getStop()
(in
ParserRuleReturnScope
)
gencodes
(in
schrodinger.application.vsw.stages
)
getCharPositionInLine()
(in
Token
)
getStop()
(in
RuleReturnScope
)
gencodes
(in
schrodinger.pipeline.stages
)
getCharPositionInLine()
(in
BaseTree
)
getStretch()
(in
Minimizer
)
GenCodesStage
(in
schrodinger.pipeline.stages.gencodes
)
getCharPositionInLine()
(in
CommonTree
)
getStretchEnergy()
(in
Minimizer
)
GENERAL_LOGLEVEL
(in
schrodinger.application.desmond.cmj
)
getCharPositionInLine()
(in
Tree
)
getStrings()
(in
sketcher
)
GENERAL_PREF_GROUP
(in
schrodinger.application.bioluminate.antibody.utils
)
getChild()
(in
DebugTreeAdaptor
)
getStructure()
(in
ReportFrame
)
GENERAL_SPECS
(in
schrodinger.application.macromodel.input
)
getChild()
(in
BaseTree
)
getStructure()
(in
JaguarInput
)
GeneralContextSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getChild()
(in
BaseTreeAdaptor
)
getStructure()
(in
JaguarOutput
)
generate()
(in
Mutator
)
getChild()
(in
CommonTreeAdaptor
)
getStructure()
(in
JaguarResults
)
generate()
(in
CanvasFingerprintGenerator
)
getChild()
(in
Tree
)
getStructure()
(in
ProjectRow
)
generate()
(in
LigandInteractionDiagram
)
getChild()
(in
TreeAdaptor
)
getStructure()
(in
Minimizer
)
generate()
(in
App
)
getChildCount()
(in
DebugTreeAdaptor
)
getStructure()
(in
_DesmondFrame
)
generate_2D_image_from_protein_ligand()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getChildCount()
(in
BaseTree
)
getStructureFile()
(in
QSiteInput
)
generate_all_atom_connections()
(in
schrodinger.application.lid.lid2d.graph
)
getChildCount()
(in
BaseTreeAdaptor
)
getStructureOutput()
(in
Pipeline
)
generate_criterion()
(in
schrodinger.utils.ligfilter
)
getChildCount()
(in
CommonTreeAdaptor
)
getStructures()
(in
_LigMut
)
generate_dummy_atoms()
(in
Membrane_Model
)
getChildCount()
(in
Tree
)
getStructures()
(in
_ProMut
)
generate_eval_string()
(in
schrodinger.infra.propedit
)
getChildCount()
(in
TreeAdaptor
)
getStructures()
(in
_RingMut
)
generate_eval_string_all()
(in
schrodinger.infra.propedit
)
getChildIndex()
(in
DebugTreeAdaptor
)
getStructures()
(in
JaguarOutput
)
generate_from_ligand()
(in
schrodinger.application.phase.hypothesis
)
getChildIndex()
(in
BaseTree
)
getStructures()
(in
sketcher
)
generate_groups()
(in
schrodinger.infra.propedit
)
getChildIndex()
(in
CommonTree
)
getStructureSize()
(in
DesmondBoxSize
)
generate_html()
(in
schrodinger.application.report2d
)
getChildIndex()
(in
CommonTreeAdaptor
)
getSubjobHost()
(in
StartDialog1
)
generate_image_and_repaint()
(in
App
)
getChildIndex()
(in
Tree
)
getSubjobHost()
(in
StartDialog2
)
generate_lid_picture_draw()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getChildIndex()
(in
TreeAdaptor
)
getSubsetEnergy()
(in
Minimizer
)
generate_mates()
(in
ProtAssign
)
getChildren()
(in
BaseTree
)
getSummaryData()
(in
MultiReportWithChart
)
generate_meta_cfg()
(in
schrodinger.application.desmond.meta
)
getCleanupRequested()
(in
Stage
)
getSuperimposedRMSD()
(in
SiteMatchLookup
)
generate_parameters()
(in
App
)
getClosest()
(in
Consensus
)
getSystemOpt()
(in
DrawFepPanel
)
generate_pdf()
(in
schrodinger.application.report2d
)
getClusterContents()
(in
CanvasFingerprintCluster
)
getSystemOpt()
(in
DrawMcPanel
)
generate_render_data()
(in
LigandInteractionDiagram
)
getClusterGUI()
(in
CanvasFingerprintClusterGUI
)
getTab()
(in
CanvasFingerprintClusterGUI
)
generate_reordered_ct()
(in
Perturbations
)
getClusteringMap()
(in
CanvasFingerprintCluster
)
getTab()
(in
CanvasFingerprintSimilarityGUI
)
generate_special_states()
(in
schrodinger.application.prepwizard
)
getClusterOrderMap()
(in
CanvasFingerprintCluster
)
getTableLayout()
(in
ActiveDatabaseDialog
)
generate_twod_and_paths()
(in
LigandInteractionDiagram
)
getClusterTime()
(in
CanvasFingerprintCluster
)
getTemplate()
(in
RuleReturnScope
)
generate_twod_and_paths_data()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
getClusterVariance()
(in
CanvasFingerprintCluster
)
getText()
(in
DebugTreeAdaptor
)
generate_xls()
(in
schrodinger.application.report2d
)
getCode()
(in
_Residue
)
getText()
(in
Lexer
)
generateCfg()
(in
Meta
)
getColorRGB()
(in
_StructureAtom
)
getText()
(in
ClassicToken
)
generateCombintations()
(in
_ProMut
)
getColorRGBString()
(in
_StructureAtom
)
getText()
(in
CommonToken
)
GenerateCovalentComplexesStage
(in
schrodinger.pipeline.stages.combine
)
getColumnIndex()
(in
Table
)
getText()
(in
Token
)
generateCsvFile()
(in
DockingStage
)
getColumnNames()
(in
Table
)
getText()
(in
BaseTreeAdaptor
)
generateDM()
(in
CanvasFingerprintCluster
)
getColumnTotal()
(in
Table
)
getText()
(in
CommonErrorNode
)
generateFingerprint()
(in
StructuralInteractionFingerprintGenerator
)
getCommand()
(in
JobControlJob
)
getText()
(in
CommonTree
)
generateHtml()
(in
Report2D
)
getCommandArgs()
(in
Launcher
)
getText()
(in
CommonTreeAdaptor
)
GenerateInterfaceSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCommandDir()
(in
BaseJob
)
getText()
(in
Tree
)
GenerateLigandSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCommandDir()
(in
ThreadedJob
)
getText()
(in
TreeAdaptor
)
generatePdf()
(in
Report2D
)
getCount()
(in
PipeIO
)
getThermoMethod()
(in
EnsembleTab
)
GeneratePropsStage
(in
schrodinger.pipeline.stages.filtering
)
getCount()
(in
Structures
)
getTimes()
(in
DesmondSimulation
)
GenerateSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCpus()
(in
StartDialog1
)
getTitle()
(in
liaison
)
generateSeqProjectRows()
(in
SimplifiedSequenceViewer
)
getCpus()
(in
StartDialog2
)
getToken()
(in
DebugTreeAdaptor
)
generateSeqStructures()
(in
SimplifiedSequenceViewer
)
getCpus()
(in
_SdJobFrame
)
getToken()
(in
CommonTree
)
GenerateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCpus()
(in
_SdSubjobFrame
)
getToken()
(in
CommonTreeAdaptor
)
GenerateSurfResSelection
(in
schrodinger.application.bioluminate.pml_menus
)
getCsvRows()
(in
Calculator
)
getToken()
(in
TreeAdaptor
)
GenerateSymmetryMates
(in
schrodinger.application.bioluminate.pml_menus
)
getCt()
(in
proteinHandler
)
getTokenErrorDisplay()
(in
BaseRecognizer
)
generateXls()
(in
Report2D
)
getCumulativeMatches()
(in
PropFilterDialog
)
getTokenIndex()
(in
ClassicToken
)
generictrajectory
(in
schrodinger.application.desmond
)
getCurrentAtomBondTyping()
(in
CanvasFingerprintGenerator
)
getTokenIndex()
(in
CommonToken
)
genFileName()
(in
Stage
)
getCurrentInputSymbol()
(in
BaseRecognizer
)
getTokenIndex()
(in
Token
)
genFixedRestrainedProtein()
(in
liaison
)
getCurrentInputSymbol()
(in
Parser
)
getTokens()
(in
CommonTokenStream
)
GenOptions
(in
schrodinger.application.jaguar.input
)
getCurrentInputSymbol()
(in
TreeParser
)
getTokenSource()
(in
DebugTokenStream
)
genOutputFileName()
(in
Stage
)
getCurrentLinkage()
(in
CanvasFingerprintCluster
)
getTokenSource()
(in
CommonTokenStream
)
GenSelectionSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCurrentSymbol()
(in
CommonTreeNodeStream
)
getTokenSource()
(in
TokenStream
)
gensym()
(in
Env
)
getCurrentType()
(in
CanvasFingerprintGenerator
)
getTokenStartIndex()
(in
DebugTreeAdaptor
)
GenSymMatesSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
getCutoffs()
(in
AdvancedOptionsPanel
)
getTokenStartIndex()
(in
CommonTree
)
geom()
(in
ComUtil
)
getData()
(in
Grid
)
getTokenStartIndex()
(in
CommonTreeAdaptor
)
geometry_read()
(in
schrodinger.application.jaguar.output
)
getData()
(in
PhaseDB
)
getTokenStartIndex()
(in
Tree
)
geometry_scan_step()
(in
schrodinger.application.jaguar.output
)
getData()
(in
Structures
)
getTokenStartIndex()
(in
TreeAdaptor
)
geopt_geometry()
(in
schrodinger.application.jaguar.output
)
getData()
(in
Text
)
getTokenStopIndex()
(in
DebugTreeAdaptor
)
geopt_stuck()
(in
schrodinger.application.jaguar.output
)
getDataLabels()
(in
SecondaryStructure
)
getTokenStopIndex()
(in
CommonTree
)
get()
(in
DebugTokenStream
)
getDataLabels()
(in
AnalysisTool
)
getTokenStopIndex()
(in
CommonTreeAdaptor
)
get()
(in
CommonTokenStream
)
getDataModelClass()
(in
ReportFrame
)
getTokenStopIndex()
(in
Tree
)
get()
(in
TokenStream
)
getDataModelClass()
(in
MultiReportWithChart
)
getTokenStopIndex()
(in
TreeAdaptor
)
get()
(in
CommonTreeNodeStream
)
getDBEntry()
(in
DBManagePanel
)
getTokenStream()
(in
Parser
)
get()
(in
TreeNodeStream
)
getDebugListener()
(in
DebugParser
)
getTokenStream()
(in
CommonTreeNodeStream
)
get()
(in
JobOutput
)
getDebugListener()
(in
DebugTokenStream
)
getTokenStream()
(in
TreeNodeStream
)
get()
(in
PairDict
)
getDebugListener()
(in
DebugTreeAdaptor
)
getTokenType()
(in
TreeWizard
)
get()
(in
schrodinger.application.desmond.envir
)
getDefault()
(in
JaguarInput
)
getToolBar()
(in
Factory
)
get()
(in
schrodinger.application.desmond.icon
)
getDefaultAtomTypingScheme()
(in
CanvasFingerprintGenerator
)
getTorsion()
(in
Minimizer
)
get()
(in
GlideJob
)
getDefinition()
(in
AddDefinitionDialog
)
getTorsionEnergy()
(in
Minimizer
)
get()
(in
Bitset
)
getDeleter()
(in
_StructureManager
)
getTotal14Pair()
(in
Minimizer
)
get()
(in
HuntCache
)
getDendrogramData()
(in
CanvasFingerprintCluster
)
getTotalAggregation()
(in
PropertyCalculator
)
get()
(in
MultiListbox
)
getDescription()
(in
CanvasFingerprintCluster
)
getTotalAtom()
(in
Minimizer
)
get()
(in
Preferences
)
getDescription()
(in
CanvasFingerprintGenerator
)
getTotalBending()
(in
Minimizer
)
get14EleEnergy()
(in
Minimizer
)
getDescription()
(in
CanvasFingerprintSimilarity
)
getTotalComplementarity()
(in
PropertyCalculator
)
get14LJEnergy()
(in
Minimizer
)
getDescription()
(in
DFA
)
getTotalEnergy()
(in
Minimizer
)
get_2var_plot()
(in
schrodinger.application.desmond.mplchart
)
getDescription()
(in
RewriteRuleElementStream
)
getTotalHydropathy()
(in
PropertyCalculator
)
get_abfep_cross_link()
(in
schrodinger.application.desmond.fepana
)
getDirective()
(in
JaguarInput
)
getTotalImpTorsion()
(in
Minimizer
)
get_action_obj_name()
(in
schrodinger.application.bioluminate.actions.factory
)
getDirectives()
(in
JaguarInput
)
getTotalpKa()
(in
PropertyCalculator
)
get_active_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getDistanceMatrixFile()
(in
CanvasFingerprintCluster
)
getTotalPotentialEnergy()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
amide_changeable
)
getDistanceToCentroid()
(in
CanvasFingerprintCluster
)
getTotalPrimeEnergy()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
carboxyl_changeable
)
getDistortedStructure()
(in
SmilesStructure
)
getTotalRotatableBonds()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
changeable
)
getDuration()
(in
JaguarOutput
)
getTotalSASA()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
histidine_changeable
)
getDuration()
(in
Job
)
getTotalSASANonPolar()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
rotatable_changeable
)
getEleEnergy()
(in
Minimizer
)
getTotalSASAPolar()
(in
PropertyCalculator
)
get_adjustable_atoms()
(in
water_changeable
)
getElement()
(in
AssignBondOrders
)
getTotalSolubility()
(in
PropertyCalculator
)
get_alignment_matrix()
(in
schrodinger.structutils.transform
)
getEnergy()
(in
PostLigPrepStage
)
getTotalStretch()
(in
Minimizer
)
get_all_bonds_on_side()
(in
schrodinger.application.lid.lid2d.graph
)
getEnergy()
(in
Minimizer
)
getTotalTorsion()
(in
Minimizer
)
get_all_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getEnergyTimeSeries()
(in
EnergyGroupAnalysis
)
getTotalTypes()
(in
Group
)
get_angle_between_vectors()
(in
schrodinger.structutils.transform
)
getErrorHandler()
(in
FormatReader
)
getTree()
(in
RuleReturnScope
)
get_appdata_dir()
(in
schrodinger.utils.fileutils
)
getErrorHandler()
(in
MaestroReader
)
getTree()
(in
TreeRuleReturnScope
)
get_asl()
(in
_AtomGroup
)
getErrorHandler()
(in
Mol2Reader
)
getTreeAdaptor()
(in
DebugEventSocketProxy
)
get_asl()
(in
schrodinger.application.desmond.mdkey
)
getErrorHandler()
(in
PDBReader
)
getTreeAdaptor()
(in
DebugTreeAdaptor
)
get_asl_chain_name()
(in
schrodinger.application.bioluminate.pml_menus
)
getErrorHandler()
(in
SDReader
)
getTreeAdaptor()
(in
CommonTreeNodeStream
)
get_atom()
(in
_Site
)
getErrorHeader()
(in
BaseRecognizer
)
getTreeAdaptor()
(in
TreeNodeStream
)
get_atom()
(in
Workspace
)
getErrorHeader()
(in
TreeParser
)
getTreeAdaptor()
(in
mexpParser
)
get_atom_group()
(in
Cms
)
getErrorMessage()
(in
BaseRecognizer
)
getTreeNodeStream()
(in
TreeParser
)
get_atom_grp()
(in
_AtomGroup
)
getErrorMessage()
(in
Lexer
)
getTreeSource()
(in
CommonTreeNodeStream
)
get_atom_grp()
(in
schrodinger.application.desmond.mdkey
)
getErrorMessage()
(in
TreeParser
)
getTreeSource()
(in
TreeNodeStream
)
get_atom_indices()
(in
local_residue
)
getExcludedAtomList()
(in
Minimizer
)
getType()
(in
DebugTreeAdaptor
)
get_atom_name()
(in
changeable
)
getExistingDirectory()
(in
FileDialog
)
getType()
(in
ClassicToken
)
get_atom_name()
(in
hbond_cluster
)
getFaces()
(in
PolyhedronCore
)
getType()
(in
CommonToken
)
get_atom_radius()
(in
schrodinger.structutils.assignbondorders
)
getFcnSigs()
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
getType()
(in
Token
)
get_atom_str()
(in
schrodinger.pipeline.stages.combine
)
getFile()
(in
JobInputFrame
)
getType()
(in
BaseTreeAdaptor
)
get_atomic_sasa()
(in
schrodinger.application.lid.lid2d.compute
)
getFile()
(in
JobInputFrame
)
getType()
(in
CommonErrorNode
)
get_attribute_alias()
(in
schrodinger.application.jaguar.output
)
getFileExt()
(in
WriteInputs
)
getType()
(in
CommonTree
)
get_authorization()
(in
schrodinger.utils.urllib
)
getFilename()
(in
FrameworkTemplate
)
getType()
(in
CommonTreeAdaptor
)
get_average_box_volume()
(in
schrodinger.application.desmond.fepana
)
getFilename()
(in
FrameworkTemplate
)
getType()
(in
Tree
)
get_average_dispersion_coefficient_from_log()
(in
schrodinger.application.desmond.fepana
)
getFilename()
(in
JobInputParams
)
getType()
(in
TreeAdaptor
)
get_backbone_atom()
(in
_Site
)
getFilename()
(in
JobInputParams
)
getType()
(in
_HypothesisFeature
)
get_backbone_indices()
(in
local_residue
)
getFilename()
(in
PhaseDatabaseOpenDialog
)
getUnexpectedToken()
(in
UnwantedTokenException
)
get_backend()
(in
schrodinger.application.desmond.meta
)
getFilename()
(in
ProjectOpenDialog
)
getUnexpectedType()
(in
RecognitionException
)
get_backend()
(in
schrodinger.job.jobcontrol
)
getFilenames()
(in
MultiInputParams
)
getUniqueID()
(in
DebugTreeAdaptor
)
get_backend_host_list()
(in
schrodinger.job.jobcontrol
)
getFilenames()
(in
JobInputParams
)
getUniqueID()
(in
BaseTreeAdaptor
)
get_basename()
(in
ModelSystem
)
getFiles()
(in
SearchType
)
getUniqueID()
(in
TreeAdaptor
)
get_basename()
(in
schrodinger.utils.fileutils
)
getFiles()
(in
Grid
)
getUniquePert()
(in
_Pert
)
get_best_vertex()
(in
Perturbations
)
getFiles()
(in
PhaseDB
)
getUnusedHostList()
(in
StageJob
)
get_bio_database()
(in
schrodinger.application.bioluminate.antibody.utils
)
getFiles()
(in
PipeIO
)
getUsedHosts()
(in
Pipeline
)
get_block_summary()
(in
schrodinger.application.desmond.simulation_block_data
)
getFiles()
(in
Structures
)
getUserOutputFiles()
(in
Pipeline
)
get_box()
(in
schrodinger.application.desmond.cms
)
getFiles()
(in
Text
)
getUserOutputs()
(in
Pipeline
)
get_box()
(in
schrodinger.application.desmond.mdkey
)
getFiles()
(in
MultiFileWriter
)
getValue()
(in
JaguarInput
)
get_boxsize()
(in
schrodinger.application.desmond.cms
)
getFiles()
(in
MultiInputFrame
)
getValue()
(in
MopacCalculation
)
get_boxsize()
(in
schrodinger.application.desmond.mdkey
)
getFiles()
(in
JobInputFrame
)
getvalue()
(in
AslCriterion
)
get_boxvolume()
(in
schrodinger.application.desmond.cms
)
getFileTypes()
(in
AdvancedOptionsPanel
)
getvalue()
(in
Criterion
)
get_boxvolume()
(in
schrodinger.application.desmond.mdkey
)
getFilterText()
(in
LigfilterFrame
)
getvalue()
(in
PredefinedCriterion
)
get_bridging_waters()
(in
schrodinger.application.prepwizard
)
getFingerprintDescription()
(in
CanvasFingerprintGeneratorCLI
)
getvalue()
(in
PropertyCriterion
)
get_broken_residues()
(in
schrodinger.structutils.interactions
)
getFingerprintString()
(in
StructuralInteractionFingerprintGenerator
)
getvalue()
(in
SmartsCriterion
)
get_centroid()
(in
schrodinger.structutils.transform
)
getFirstChildWithType()
(in
BaseTree
)
getVerbosity()
(in
Stage
)
get_chain_sequences()
(in
schrodinger.application.prepwizard
)
getFirstSelectedRow()
(in
Table
)
getVertices()
(in
Cube
)
get_clone_xyz()
(in
schrodinger.application.desmond.mdkey
)
getFrag()
(in
_Pert
)
getVertices()
(in
Dodecahedron
)
get_cmd_string()
(in
schrodinger.application.desmond.util
)
getFragList()
(in
_LigMut
)
getVertices()
(in
Icosahedron
)
get_color()
(in
schrodinger.application.bioluminate.pml_menus
)
getFragList()
(in
_ProMut
)
getVertices()
(in
Octahedron
)
get_color_scheme()
(in
schrodinger.structutils.color
)
getFragList()
(in
_RingMut
)
getVertices()
(in
PolyhedronCore
)
get_command()
(in
schrodinger.job.queue
)
getFrame()
(in
DesmondSimulation
)
getVertices()
(in
Tetrahedron
)
get_command_items()
(in
schrodinger.maestro.maestro
)
getFrameResults()
(in
EnergyGroup
)
getVisibleColumnIndex()
(in
Table
)
get_command_line_host_list()
(in
schrodinger.job.jobcontrol
)
getFrameResults()
(in
Angle
)
getVisibleColumnTotal()
(in
Table
)
get_command_option()
(in
schrodinger.maestro.maestro
)
getFrameResults()
(in
AverageStructure
)
getVisibleRowIndex()
(in
Table
)
get_connected_pair()
(in
Rama
)
getFrameResults()
(in
CenterOfMass
)
getVisibleRowTotal()
(in
Table
)
get_constraint()
(in
Cms
)
getFrameResults()
(in
CenterOfMotion
)
getVSliderMax()
(in
SliderPlot
)
get_converged()
(in
schrodinger.structutils.minimize
)
getFrameResults()
(in
CovarianceMatrix
)
getVSliderMin()
(in
SliderPlot
)
get_coords_array_from_list()
(in
schrodinger.structutils.transform
)
getFrameResults()
(in
Dihedral
)
getWmapParams()
(in
Complex
)
get_cross()
(in
schrodinger.graphics3d.common
)
getFrameResults()
(in
Distance
)
getxhead()
(in
MaestroArrow
)
get_csidl_dir()
(in
schrodinger.utils.fileutils
)
getFrameResults()
(in
HydrogenBondFinder
)
getxtail()
(in
MaestroArrow
)
get_ct()
(in
Entry
)
getFrameResults()
(in
HydrogenBondTracker
)
getXYZ()
(in
Structure
)
get_ct()
(in
EntryGroup
)
getFrameResults()
(in
PlanarAngle
)
getyhead()
(in
MaestroArrow
)
get_current_command_item()
(in
schrodinger.maestro.maestro
)
getFrameResults()
(in
Position
)
getytail()
(in
MaestroArrow
)
get_cutoff_from_log()
(in
schrodinger.application.desmond.fepana
)
getFrameResults()
(in
RMSD
)
getzhead()
(in
MaestroArrow
)
get_databases()
(in
schrodinger.application.bioluminate.antibody.utils
)
getFrameResults()
(in
RMSF
)
getztail()
(in
MaestroArrow
)
get_default_criterion_parser()
(in
schrodinger.utils.ligfilter
)
getFrameResults()
(in
RadiusOfGyration
)
Gfactor_summary_data_set
(in
Report
)
get_default_setting()
(in
schrodinger.application.desmond.config
)
getFrameResults()
(in
Ramachandran
)
gid
(in
Task
)
get_degrees_of_freedom()
(in
Cms
)
getFrameResults()
(in
SecondaryStructure
)
gid()
(in
Cms
)
get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
getFrameResults()
(in
AnalysisTool
)
gid_refresh()
(in
Cms
)
get_desktop_dir()
(in
schrodinger.utils.fileutils
)
getFrameStructure()
(in
DesmondSimulation
)
giveHelp()
(in
App
)
get_diff_pert()
(in
Perturbations
)
getFrameTime()
(in
DesmondSimulation
)
glide
(in
schrodinger.application
)
get_dihedral_atoms()
(in
changeable
)
getg()
(in
MaestroArrow
)
glide
(in
schrodinger.application.glide
)
get_directed_pert()
(in
Perturbations
)
getGrammarFileName()
(in
BaseRecognizer
)
glide
(in
schrodinger.application.vsw.stages
)
get_directory()
(in
schrodinger.maestro.maestro
)
getGroup()
(in
Preferences
)
glide
(in
schrodinger.pipeline.stages
)
get_directory()
(in
schrodinger.utils.fileutils
)
getGroups()
(in
EnergyGroupAnalysis
)
GLIDE_ATOM_COULSCALE
(in
schrodinger.infra.mm
)
get_distance()
(in
schrodinger.application.desmond.meta
)
getGroupTime()
(in
CanvasFingerprintCluster
)
GLIDE_ATOM_VDWSCALE
(in
schrodinger.infra.mm
)
get_driver_option_parser()
(in
schrodinger.application.canvas.driverutils
)
getGUI()
(in
CanvasFingerprintGeneratorGUI
)
GLIDE_COMBIGLIDE
(in
schrodinger.infra.licensing
)
get_energy()
(in
schrodinger.application.macromodel.apps
)
getGUI()
(in
CanvasFingerprintSimilarityGUI
)
GLIDE_CORE_HOPPING
(in
schrodinger.infra.licensing
)
get_energy()
(in
schrodinger.pipeline.stages.ligprep
)
getHost()
(in
StartDialog1
)
GLIDE_DOCK_SCORE
(in
schrodinger.infra.mm
)
get_energy()
(in
schrodinger.structutils.minimize
)
getHost()
(in
StartDialog2
)
GLIDE_DOCKING
(in
schrodinger.infra.licensing
)
get_energy_group_output_filename()
(in
schrodinger.application.desmond.config
)
getHost()
(in
Host
)
GLIDE_ELEMENTS
(in
schrodinger.infra.licensing
)
get_energy_table()
(in
schrodinger.application.desmond.fepana
)
getHostList()
(in
Stage
)
GLIDE_EPIK_PENAL
(in
schrodinger.infra.mm
)
get_enrichment_calculator()
(in
schrodinger.application.glide.glideanalysis
)
getHosts()
(in
StartDialog
)
GLIDE_FLEX_CONFLICTS
(in
schrodinger.infra.mm
)
get_ensemble_class_method()
(in
schrodinger.application.desmond.config
)
getHosts()
(in
StartDialog
)
GLIDE_FLEXCONFL_ATOM1
(in
schrodinger.infra.mm
)
get_ent()
(in
schrodinger.protein.getpdb
)
getHostStr()
(in
App
)
GLIDE_FLEXCONFL_ATOM2
(in
schrodinger.infra.mm
)
get_entry()
(in
EntryGroup
)
getHostStr()
(in
Stage
)
GLIDE_FLEXPOS
(in
schrodinger.infra.mm
)
get_entry_hypothesis()
(in
schrodinger.application.phase.hypothesis
)
getHSliderMax()
(in
SliderPlot
)
GLIDE_FLEXPOS_ATOM
(in
schrodinger.infra.mm
)
get_entry_id()
(in
schrodinger.application.desmond.maestro
)
getHSliderMin()
(in
SliderPlot
)
GLIDE_FLEXPOS_POSINDEX
(in
schrodinger.infra.mm
)
get_entry_id()
(in
schrodinger.application.desmond.util
)
getHydropathyGenerator()
(in
PropertyCalculator
)
GLIDE_FLEXR_ALTX1
(in
schrodinger.infra.mm
)
get_entryimport_opts()
(in
schrodinger.protein.getpdb
)
getID()
(in
_HypothesisFeature
)
GLIDE_FLEXR_ALTX2
(in
schrodinger.infra.mm
)
get_entryname_prefix()
(in
schrodinger.application.desmond.maestro
)
getId()
(in
_DesmondFrame
)
GLIDE_FLEXR_ALTX3
(in
schrodinger.infra.mm
)
get_error_text()
(in
schrodinger.application.mopac
)
getImpTorsion()
(in
Minimizer
)
GLIDE_FLEXR_ALTY1
(in
schrodinger.infra.mm
)
get_excluded_columns()
(in
schrodinger.application.canvas.driverutils
)
getImpTorsionEnergy()
(in
Minimizer
)
GLIDE_FLEXR_ALTY2
(in
schrodinger.infra.mm
)
get_exec()
(in
schrodinger.application.desmond.config
)
getIncorp()
(in
_SdIncorpFrame
)
GLIDE_FLEXR_ALTY3
(in
schrodinger.infra.mm
)
get_exec_name()
(in
schrodinger.application.desmond.config
)
getIndexInfo()
(in
_RamachandranCallback
)
GLIDE_FLEXR_ALTZ1
(in
schrodinger.infra.mm
)
get_existing_directory()
(in
schrodinger.ui.qt.filedialog
)
getIndices()
(in
Cube
)
GLIDE_FLEXR_ALTZ2
(in
schrodinger.infra.mm
)
get_existing_phase_database()
(in
schrodinger.ui.qt.filedialog
)
getIndices()
(in
Dodecahedron
)
GLIDE_FLEXR_ALTZ3
(in
schrodinger.infra.mm
)
get_existing_project_name()
(in
schrodinger.ui.qt.filedialog
)
getIndices()
(in
Icosahedron
)
GLIDE_FLEXR_MAXALTPOS
(in
schrodinger.infra.mm
)
get_fep_ct_indices()
(in
schrodinger.trajectory.desmondsimulation
)
getIndices()
(in
Octahedron
)
GLIDE_FLEXR_MOVABLE
(in
schrodinger.infra.mm
)
get_fep_idx_map()
(in
schrodinger.trajectory.desmondsimulation
)
getIndices()
(in
PolyhedronCore
)
GLIDE_FLEXR_NALTPOS
(in
schrodinger.infra.mm
)
get_fep_lambda_schedule()
(in
schrodinger.application.desmond.config
)
getIndices()
(in
Tetrahedron
)
GLIDE_FLEXR_NFLEX
(in
schrodinger.infra.mm
)
get_fep_output_filename()
(in
schrodinger.application.desmond.config
)
getInPlaceRMSD()
(in
SiteMatchLookup
)
GLIDE_GPGPU
(in
schrodinger.infra.licensing
)
get_fepio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getInput()
(in
Stage
)
GLIDE_GRID_CONS
(in
schrodinger.infra.mm
)
get_fepio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getInputFile()
(in
AppFramework
)
GLIDE_GRID_COUL
(in
schrodinger.infra.mm
)
get_fepio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getInputFiles()
(in
Job
)
GLIDE_GRID_COUL2
(in
schrodinger.infra.mm
)
get_ffio_sub_block_std_prop_getter()
(in
schrodinger.application.desmond.ffiostructure
)
getInputNames()
(in
Stage
)
GLIDE_GRID_CSC
(in
schrodinger.infra.mm
)
get_ffio_sub_block_std_prop_setter()
(in
schrodinger.application.desmond.ffiostructure
)
getInputSource()
(in
AppFramework
)
GLIDE_GRID_GRD
(in
schrodinger.infra.mm
)
get_ffio_sub_block_std_prop_short_name()
(in
schrodinger.application.desmond.ffiostructure
)
getInputStream()
(in
ClassicToken
)
GLIDE_GRID_GREEDY
(in
schrodinger.infra.mm
)
get_font_names()
(in
schrodinger.maestro.maestro
)
getInputStream()
(in
CommonToken
)
GLIDE_GRID_GSC
(in
schrodinger.infra.mm
)
get_formal_charge()
(in
CtObj
)
getInputStream()
(in
Token
)
GLIDE_GRID_RECEP
(in
schrodinger.infra.mm
)
get_fragment_structure()
(in
schrodinger.protein.helix
)
getInteractionEnergy()
(in
Minimizer
)
GLIDE_GRID_SAVE
(in
schrodinger.infra.mm
)
get_fragname()
(in
Cms
)
getInteractionEnergyComponents()
(in
Minimizer
)
GLIDE_GRID_SITE
(in
schrodinger.infra.mm
)
get_fragname()
(in
schrodinger.application.desmond.struc
)
getInteractionEnergyGenerator()
(in
PropertyCalculator
)
GLIDE_GRID_VDW
(in
schrodinger.infra.mm
)
get_global_quantity()
(in
schrodinger.application.desmond.fepana
)
getInteractionMatrix()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_GRID_VDWC
(in
schrodinger.infra.mm
)
get_gluepoints()
(in
schrodinger.application.desmond.cms
)
getInterfaceASL()
(in
InterfaceMixin
)
GLIDE_GRID_XVOL
(in
schrodinger.infra.mm
)
get_gui_table()
(in
Perturbations
)
getInternalEnergyGenerator()
(in
PropertyCalculator
)
GLIDE_GRIDBOX_LIGXRANGE
(in
schrodinger.infra.mm
)
get_heavies()
(in
amide_changeable
)
getIrcStep()
(in
JaguarOutput
)
GLIDE_GRIDBOX_LIGYRANGE
(in
schrodinger.infra.mm
)
get_heavies()
(in
amine_changeable
)
getIsFarthestFromCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_GRIDBOX_LIGZRANGE
(in
schrodinger.infra.mm
)
get_heavies()
(in
carboxyl_changeable
)
getIsNearestToCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_GRIDBOX_XCENT
(in
schrodinger.infra.mm
)
get_heavies()
(in
histidine_changeable
)
getItems()
(in
MultiSelectComboBox
)
GLIDE_GRIDBOX_XRANGE
(in
schrodinger.infra.mm
)
get_heavies()
(in
rotatable_changeable
)
getJob()
(in
_Backend
)
GLIDE_GRIDBOX_YCENT
(in
schrodinger.infra.mm
)
get_heavies()
(in
water_changeable
)
getJob()
(in
JobControlJob
)
GLIDE_GRIDBOX_YRANGE
(in
schrodinger.infra.mm
)
get_home_dir()
(in
schrodinger.job.remote_command
)
getJobDJ()
(in
BaseJob
)
GLIDE_GRIDBOX_ZCENT
(in
schrodinger.infra.mm
)
get_home_dir()
(in
schrodinger.utils.fileutils
)
getJobDJ()
(in
Stage
)
GLIDE_GRIDBOX_ZRANGE
(in
schrodinger.infra.mm
)
get_homebox()
(in
schrodinger.application.desmond.config
)
getJobname()
(in
StartDialog1
)
GLIDE_HTVS_KEY_1
(in
schrodinger.structutils.sort
)
get_homebox()
(in
schrodinger.application.desmond.mdkey
)
getJobname()
(in
StartDialog2
)
GLIDE_HTVS_KEY_2
(in
schrodinger.structutils.sort
)
get_host()
(in
schrodinger.job.jobcontrol
)
getJobName()
(in
App
)
GLIDE_LIGAND_EFFICIENCY
(in
schrodinger.infra.mm
)
get_hostfile()
(in
schrodinger.job.jobcontrol
)
getJobParameters()
(in
AppFramework
)
GLIDE_LIGAND_EFFICIENCY_LN
(in
schrodinger.infra.mm
)
get_hosts()
(in
schrodinger.job.jobcontrol
)
getKelleyPenaltyList()
(in
CanvasFingerprintCluster
)
GLIDE_LIGAND_EFFICIENCY_SA
(in
schrodinger.infra.mm
)
get_included_entries()
(in
schrodinger.maestro.maestro
)
getKey()
(in
Key
)
GLIDE_MAIN
(in
schrodinger.infra.licensing
)
get_included_entry()
(in
schrodinger.maestro.maestro
)
getKeyType()
(in
Preferences
)
glide_path
(in
schrodinger.pipeline.stages.glide
)
get_indices()
(in
schrodinger.application.desmond.util
)
getKindOfOps()
(in
TokenRewriteStream
)
GLIDE_PRIMEX_LIGFIT
(in
schrodinger.infra.licensing
)
get_job_details()
(in
schrodinger.application.desmond.simulation_block_test
)
getLabel()
(in
EnergyGroup
)
GLIDE_SP_DOCKING
(in
schrodinger.infra.licensing
)
get_job_selection()
(in
schrodinger.job.jobcontrol
)
getLabel()
(in
Angle
)
GLIDE_SP_ELECTRO
(in
schrodinger.infra.mm
)
get_jobname()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
AverageStructure
)
GLIDE_SP_GSCORE
(in
schrodinger.infra.mm
)
get_jobs()
(in
schrodinger.job.jobcontrol
)
getLabel()
(in
CenterOfMass
)
GLIDE_SP_HBOND
(in
schrodinger.infra.mm
)
get_lambda()
(in
_FepSchedule
)
getLabel()
(in
CenterOfMotion
)
GLIDE_SP_KEY_1
(in
schrodinger.structutils.sort
)
get_lambda()
(in
FepSchedule
)
getLabel()
(in
CovarianceMatrix
)
GLIDE_SP_KEY_2
(in
schrodinger.structutils.sort
)
get_last_20_lines()
(in
schrodinger.pipeline.pipeutils
)
getLabel()
(in
Dihedral
)
GLIDE_SP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_lead_confs()
(in
schrodinger.application.macromodel.apps
)
getLabel()
(in
Distance
)
GLIDE_SP_LOWMW
(in
schrodinger.infra.mm
)
get_license()
(in
schrodinger.application.canvas.utils
)
getLabel()
(in
HydrogenBondTracker
)
GLIDE_SP_PENAL_HB
(in
schrodinger.infra.mm
)
get_lig_heavy_atom_num()
(in
ModelSystem
)
getLabel()
(in
PlanarAngle
)
GLIDE_SP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_ligand_asl()
(in
schrodinger.maestro.maestro
)
getLabel()
(in
RMSD
)
GLIDE_SP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_ligand_asl()
(in
schrodinger.structutils.sitealign
)
getLabel()
(in
RMSF
)
GLIDE_SP_PENALS
(in
schrodinger.infra.mm
)
get_ligand_from_complex()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
getLabel()
(in
RadiusOfGyration
)
GLIDE_SP_PHOBEN
(in
schrodinger.infra.mm
)
get_listof_props_ene()
(in
schrodinger.application.desmond.simulation_block_data
)
getLabel()
(in
SecondaryStructure
)
GLIDE_SP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_local_appdata_dir()
(in
schrodinger.utils.fileutils
)
getLabel()
(in
VolumeMapper
)
GLIDE_SP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_log_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getLabel()
(in
AnalysisTool
)
GLIDE_SP_PICAT
(in
schrodinger.infra.mm
)
get_maestro_toplevel_window()
(in
schrodinger.maestro.maestro
)
GetLabelBBXAnnotator
(in
schrodinger.application.lid.lid2d.annotators
)
GLIDE_SP_SITEMAP
(in
schrodinger.infra.mm
)
get_matching_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getLargestNumericType()
(in
Zmat
)
GLIDE_TORCONS_BLOCK
(in
schrodinger.infra.mm
)
get_matching_ws_entries()
(in
schrodinger.application.bioluminate.pml_menus
)
getLastRewriteTokenIndex()
(in
TokenRewriteStream
)
GLIDE_TORCONS_BONDBLOCK
(in
schrodinger.infra.mm
)
get_mean()
(in
schrodinger.application.desmond.fepana
)
getLaunchCommand()
(in
ComUtil
)
GLIDE_TORCONS_IATOM
(in
schrodinger.infra.mm
)
get_memory_usage()
(in
schrodinger.utils.system
)
getLigandID()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_TORCONS_JATOM
(in
schrodinger.infra.mm
)
get_metal_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
getLigandTitle()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_TORCONS_KATOM
(in
schrodinger.infra.mm
)
get_mm_return_codes()
(in
schrodinger.infra.mm
)
getLine()
(in
Lexer
)
GLIDE_TORCONS_LATOM
(in
schrodinger.infra.mm
)
get_model_system_type()
(in
schrodinger.application.desmond.cms
)
getLine()
(in
ANTLRStringStream
)
GLIDE_TORCONS_SETVAL
(in
schrodinger.infra.mm
)
get_model_system_type()
(in
schrodinger.application.desmond.mdkey
)
getLine()
(in
CharStream
)
GLIDE_TORCONS_SMARTS
(in
schrodinger.infra.mm
)
get_mopac_codes()
(in
schrodinger.application.moldescriptors
)
getLine()
(in
ClassicToken
)
GLIDE_TORCONS_VALUE
(in
schrodinger.infra.mm
)
get_mopac_jobname()
(in
schrodinger.application.mopac
)
getLine()
(in
CommonToken
)
GLIDE_XP_CL_BR_PACK
(in
schrodinger.infra.mm
)
get_mopac_methods()
(in
schrodinger.application.moldescriptors
)
getLine()
(in
Token
)
GLIDE_XP_DESC
(in
schrodinger.infra.licensing
)
get_mydocuments_dir()
(in
schrodinger.utils.fileutils
)
getLine()
(in
BaseTree
)
GLIDE_XP_DOCKING
(in
schrodinger.infra.licensing
)
get_mynetworkplaces_dir()
(in
schrodinger.utils.fileutils
)
getLine()
(in
CommonTree
)
GLIDE_XP_ELECTRO
(in
schrodinger.infra.mm
)
get_name()
(in
ReturnCode
)
getLine()
(in
Tree
)
GLIDE_XP_GSCORE
(in
schrodinger.infra.mm
)
get_name_file()
(in
schrodinger.application.jaguar.input
)
getLinkageDescription()
(in
CanvasFingerprintClusterCLI
)
GLIDE_XP_HBOND
(in
schrodinger.infra.mm
)
get_neighbors()
(in
schrodinger.structutils.assignbondorders
)
getLinkageGUI()
(in
CanvasFingerprintClusterGUI
)
GLIDE_XP_IMPVERS
(in
schrodinger.infra.mm
)
get_new_index()
(in
changeable
)
getLJEnergy()
(in
Minimizer
)
GLIDE_XP_KEY_1
(in
schrodinger.structutils.sort
)
get_next_filename()
(in
schrodinger.utils.fileutils
)
getLocal()
(in
Stage
)
GLIDE_XP_KEY_2
(in
schrodinger.structutils.sort
)
get_next_filename_prefix()
(in
schrodinger.utils.fileutils
)
getlogin()
(in
schrodinger.application.desmond.util
)
GLIDE_XP_LIPOPHILIC_EVDW
(in
schrodinger.infra.mm
)
get_next_partition()
(in
schrodinger.application.desmond.autopartition
)
getMasterjobHost()
(in
StartDialog1
)
GLIDE_XP_LOWMW
(in
schrodinger.infra.mm
)
get_nmr()
(in
schrodinger.application.jaguar.output
)
getMasterjobHost()
(in
StartDialog2
)
GLIDE_XP_PENAL_HB
(in
schrodinger.infra.mm
)
get_nonduplicated_atom()
(in
schrodinger.application.desmond.remd
)
getMatchingAtomMap()
(in
SiteMatchLookup
)
GLIDE_XP_PENAL_PHOBIC
(in
schrodinger.infra.mm
)
get_normalized()
(in
schrodinger.graphics3d.common
)
getmaterial()
(in
MaestroArrow
)
GLIDE_XP_PENAL_ROT
(in
schrodinger.infra.mm
)
get_normalized_vector()
(in
schrodinger.structutils.transform
)
getMatrixTime()
(in
CanvasFingerprintCluster
)
GLIDE_XP_PENALS
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
Cms
)
getMaxDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
GLIDE_XP_PHOBEN
(in
schrodinger.infra.mm
)
get_num_constraint()
(in
schrodinger.application.desmond.remd
)
getMaxjob()
(in
StartDialog1
)
GLIDE_XP_PHOBEN_HB
(in
schrodinger.infra.mm
)
get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
getMaxjob()
(in
StartDialog2
)
GLIDE_XP_PHOBEN_PAIRHB
(in
schrodinger.infra.mm
)
get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
getMaxRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_XP_PICAT
(in
schrodinger.infra.mm
)
get_number_density_from_cms()
(in
schrodinger.application.desmond.fepana
)
getMaxRetries()
(in
Stage
)
GLIDE_XP_PISTACK
(in
schrodinger.infra.mm
)
get_op_positions()
(in
schrodinger.infra.propedit
)
getMaxSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_POSERANK
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
SequenceFileDialog
)
getMeanMaxActiveActiveSim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XP_SITEMAP
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
TemplateFileDialog
)
getMeanMaxActiveDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ
(in
schrodinger.infra.mm
)
get_open_file_name()
(in
schrodinger.ui.qt.filedialog
)
getMeanMaxDecoyDecoySim()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_CLBRPACK
(in
schrodinger.infra.mm
)
get_open_file_names()
(in
SequenceFileDialog
)
getMeanSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_CLBRPACKAT
(in
schrodinger.infra.mm
)
get_open_file_names()
(in
schrodinger.ui.qt.filedialog
)
getMenu()
(in
Factory
)
GLIDE_XPVIZ_EXPO
(in
schrodinger.infra.mm
)
get_opener()
(in
schrodinger.utils.urllib
)
getMenuBar()
(in
Factory
)
GLIDE_XPVIZ_EXPO_GROUP_PENAL
(in
schrodinger.infra.mm
)
get_option()
(in
SingleDashOptionParser
)
getMergeDistanceList()
(in
CanvasFingerprintCluster
)
GLIDE_XPVIZ_EXPO_GROUPAT
(in
schrodinger.infra.mm
)
get_parser()
(in
schrodinger.analysis.enrichment
)
getMessage()
(in
RewriteCardinalityException
)
GLIDE_XPVIZ_EXPO_LIGAT
(in
schrodinger.infra.mm
)
get_parser()
(in
schrodinger.application.glide.poseviewconvert
)
getMetric()
(in
CanvasFingerprintSimilarity
)
GLIDE_XPVIZ_EXPO_LIGGROUP
(in
schrodinger.infra.mm
)
get_pathway()
(in
schrodinger.application.desmond.fepana
)
getMetricStyle()
(in
CanvasFingerprintSimilarity
)
GLIDE_XPVIZ_EXPO_NAT
(in
schrodinger.infra.mm
)
get_pdb()
(in
schrodinger.protein.getpdb
)
getMExpr()
(in
CV
)
GLIDE_XPVIZ_EXPO_PENAL
(in
schrodinger.infra.mm
)
get_penalty()
(in
amide_changeable
)
getMExpr()
(in
CVAngle
)
GLIDE_XPVIZ_EXPOSURE
(in
schrodinger.infra.mm
)
get_penalty()
(in
amine_changeable
)
getMExpr()
(in
CVDihedral
)
GLIDE_XPVIZ_HBONDS
(in
schrodinger.infra.mm
)
get_penalty()
(in
carboxyl_changeable
)
getMExpr()
(in
CVDist
)
GLIDE_XPVIZ_HBSCT
(in
schrodinger.infra.mm
)
get_penalty()
(in
changeable
)
getMExpr()
(in
CVrmsd
)
GLIDE_XPVIZ_HEXPAIRS
(in
schrodinger.infra.mm
)
get_penalty()
(in
histidine_changeable
)
getMExpr()
(in
CVzdist0
)
GLIDE_XPVIZ_HEXPR_INDEX
(in
schrodinger.infra.mm
)
get_penalty()
(in
rotatable_changeable
)
getMinimalDifference()
(in
_DesmondFrame
)
GLIDE_XPVIZ_HEXSP
(in
schrodinger.infra.mm
)
get_penalty()
(in
water_changeable
)
getMinRes()
(in
StructuralInteractionFingerprintGenerator
)
GLIDE_XPVIZ_HEXSPEC
(in
schrodinger.infra.mm
)
get_pert_data()
(in
Perturbations
)
getMinSimDecoyByActiveId()
(in
ActiveDecoyFingerprintAnalyzer
)
GLIDE_XPVIZ_IHBL
(in
schrodinger.infra.mm
)
get_pert_reference()
(in
Perturbations
)
getMissingSymbol()
(in
BaseRecognizer
)
GLIDE_XPVIZ_IHBP
(in
schrodinger.infra.mm
)
get_pert_unique_feps()
(in
Perturbations
)
getMissingSymbol()
(in
Parser
)
GLIDE_XPVIZ_IPOTAT
(in
schrodinger.infra.mm
)
get_phi_psi_atoms()
(in
schrodinger.trajectory.analysis
)
getMissingSymbol()
(in
TreeParser
)
GLIDE_XPVIZ_IPSPEC
(in
schrodinger.infra.mm
)
get_picked()
(in
Rama
)
getMissingType()
(in
MissingTokenException
)
GLIDE_XPVIZ_ISPEC1A
(in
schrodinger.infra.mm
)
get_position_array()
(in
_FepFrame
)
getMmsymMap()
(in
ConformerRmsdX
)
GLIDE_XPVIZ_ISPEC2A
(in
schrodinger.infra.mm
)
get_prime_factors()
(in
schrodinger.application.desmond.autopartition
)
getMobileStRMSD()
(in
SiteMatchLookup
)
GLIDE_XPVIZ_JPSPEC
(in
schrodinger.infra.mm
)
get_print_simbox_data()
(in
schrodinger.application.desmond.simulation_block_data
)
getMolecule()
(in
_StructureAtom
)
GLIDE_XPVIZ_LIGNAME
(in
schrodinger.infra.mm
)
get_product_info()
(in
schrodinger.application.desmond.util
)
getMoleculeAtoms()
(in
Structure
)
GLIDE_XPVIZ_LIGNUM
(in
schrodinger.infra.mm
)
get_prop_value()
(in
Array_Prop
)
getName()
(in
Stage
)
GLIDE_XPVIZ_NEXPO
(in
schrodinger.infra.mm
)
get_property_name()
(in
schrodinger.structutils.smiles
)
getNB14Pairs()
(in
Minimizer
)
GLIDE_XPVIZ_NGPP
(in
schrodinger.infra.mm
)
get_prot()
(in
ModelSystem
)
getNBEnergyComponents()
(in
Minimizer
)
GLIDE_XPVIZ_NPENAL
(in
schrodinger.infra.mm
)
get_proxy_config_file()
(in
schrodinger.utils.urllib
)
getNBEnergyForTwoAtomLists()
(in
Minimizer
)
GLIDE_XPVIZ_NPICATAT
(in
schrodinger.infra.mm
)
get_pybatch_optparser()
(in
schrodinger.application.jaguar.utils
)
getNeededCriteria()
(in
SecondSecondaryStructure
)
GLIDE_XPVIZ_NPICATRES
(in
schrodinger.infra.mm
)
get_qikprop_properties()
(in
schrodinger.application.moldescriptors
)
getNeighboringRings()
(in
AssignBondOrders
)
GLIDE_XPVIZ_NRINGSTACK
(in
schrodinger.infra.mm
)
get_range_specification()
(in
schrodinger.application.canvas.driverutils
)
getNeighbors()
(in
AssignBondOrders
)
GLIDE_XPVIZ_PACK_RES
(in
schrodinger.infra.mm
)
get_receptor_positive_centroids()
(in
schrodinger.structutils.interactions
)
getNeighborsObj()
(in
AssignBondOrders
)
GLIDE_XPVIZ_PACK_RESGROUP
(in
schrodinger.infra.mm
)
get_rep_confs()
(in
schrodinger.application.macromodel.apps
)
getNewxpJobname()
(in
NewxpJobdata
)
GLIDE_XPVIZ_PACK_RESNUM
(in
schrodinger.infra.mm
)
get_replica_setting()
(in
schrodinger.application.desmond.config
)
getNJobs()
(in
Stage
)
GLIDE_XPVIZ_PENAL_AMAT1
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.application.bioluminate.protein
)
getNodeIndex()
(in
CommonTreeNodeStream
)
GLIDE_XPVIZ_PENAL_AMAT2
(in
schrodinger.infra.mm
)
get_residue_asl()
(in
schrodinger.structutils.sitealign
)
getNodeNumber()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_PENAL_AMAT3
(in
schrodinger.infra.mm
)
get_residue_name()
(in
Report
)
getNodeST()
(in
DOTTreeGenerator
)
GLIDE_XPVIZ_PENAL_AMAT4
(in
schrodinger.infra.mm
)
get_residue_name()
(in
changeable
)
getNonBondedEnergies()
(in
Minimizer
)
GLIDE_XPVIZ_PENAL_AMLIST
(in
schrodinger.infra.mm
)
get_residue_name()
(in
hbond_cluster
)
getNonDefault()
(in
JaguarInput
)
GLIDE_XPVIZ_PENAL_AMPAR
(in
schrodinger.infra.mm
)
get_residue_sitename()
(in
schrodinger.application.desmond.struc
)
getNumberOfClustersList()
(in
CanvasFingerprintCluster
)
GLIDE_XPVIZ_PENAL_AMPEN
(in
schrodinger.infra.mm
)
get_residue_text()
(in
schrodinger.application.lid.lid2d.schroutils
)
getNumberOfSyntaxErrors()
(in
BaseRecognizer
)
GLIDE_XPVIZ_PENAL_BLKPCHG
(in
schrodinger.infra.mm
)
get_residues()
(in
Zmat
)
getNumBondOrders()
(in
AssignBondOrders
)
GLIDE_XPVIZ_PENAL_BLKPPAR
(in
schrodinger.infra.mm
)
get_residues_asl()
(in
schrodinger.application.bioluminate.protein
)
getNumLigandHeavyAtoms()
(in
DrawSolventPanel
)
GLIDE_XPVIZ_PENAL_CHARGE
(in
schrodinger.infra.mm
)
get_residues_within()
(in
schrodinger.application.bioluminate.protein
)
getNumNeighbors()
(in
AssignBondOrders
)
GLIDE_XPVIZ_PENAL_CHGAT
(in
schrodinger.infra.mm
)
get_restr()
(in
_AtomGroup
)
getNumStructures()
(in
MultiFileWriter
)
GLIDE_XPVIZ_PENAL_CHGLIST
(in
schrodinger.infra.mm
)
get_restr()
(in
schrodinger.application.desmond.mdkey
)
getOffIterator()
(in
Bitset
)
GLIDE_XPVIZ_PENAL_CHGPAR
(in
schrodinger.infra.mm
)
get_restr2()
(in
schrodinger.application.desmond.mdkey
)
getOffsets()
(in
FrameAslSelection
)
GLIDE_XPVIZ_PENAL_CONTACT
(in
schrodinger.infra.mm
)
get_restrain()
(in
Cms
)
getOffsets()
(in
FrameIndexSelection
)
GLIDE_XPVIZ_PENAL_CONTAT
(in
schrodinger.infra.mm
)
get_rgb_from_color_index()
(in
schrodinger.structutils.color
)
getOffsets()
(in
FrameSliceSelection
)
GLIDE_XPVIZ_PENAL_CONTLIST
(in
schrodinger.infra.mm
)
get_rgb_from_color_name()
(in
schrodinger.structutils.color
)
getopacity()
(in
MaestroArrow
)
GLIDE_XPVIZ_PENAL_CONTPAR
(in
schrodinger.infra.mm
)
get_rings_in_group()
(in
schrodinger.structutils.assignbondorders
)
getOpcdArgs()
(in
ComUtil
)
GLIDE_XPVIZ_PENAL_DDPEN
(in
schrodinger.infra.mm
)
get_rms_gradient()
(in
schrodinger.structutils.minimize
)
getOpcdArgs()
(in
SbcUtil
)
GLIDE_XPVIZ_PENAL_DDPENLIST
(in
schrodinger.infra.mm
)
get_rotation_matrix()
(in
schrodinger.structutils.transform
)
getOpenFileName()
(in
SequenceFileDialog
)
GLIDE_XPVIZ_PENAL_DDPENPAR
(in
schrodinger.infra.mm
)
get_rotation_matrix_from_eulers()
(in
schrodinger.structutils.transform
)
getOpenFileName()
(in
AppFramework
)
GLIDE_XPVIZ_PENAL_DESOLVAT
(in
schrodinger.infra.mm
)
get_rsh_exec()
(in
schrodinger.job.remote_command
)
getOpenFileName()
(in
FileDialog
)
GLIDE_XPVIZ_PENAL_DESOLVLIST
(in
schrodinger.infra.mm
)
get_runtime_path()
(in
schrodinger.job.jobcontrol
)
getOpenFileNames()
(in
AppFramework
)
GLIDE_XPVIZ_PENAL_DONORAT1
(in
schrodinger.infra.mm
)
get_save_file_name()
(in
schrodinger.ui.qt.filedialog
)
getOpenFileNames()
(in
FileDialog
)
GLIDE_XPVIZ_PENAL_DONORAT2
(in
schrodinger.infra.mm
)
get_sbt_tests()
(in
schrodinger.application.desmond.simulation_block_test
)
getOptionDesc()
(in
CanvasFingerprintGeneratorCLI
)
GLIDE_XPVIZ_PENAL_PHOBAT
(in
schrodinger.infra.mm
)
get_schrodinger_temp_dir()
(in
schrodinger.utils.fileutils
)
getOptions()
(in
Minimizer
)
GLIDE_XPVIZ_PENAL_PHOBLIST
(in
schrodinger.infra.mm
)
get_set()
(in
Report
)
getOrAddColumn()
(in
Table
)
GLIDE_XPVIZ_PENAL_PHOBPAR
(in
schrodinger.infra.mm
)
get_sidechain_atom()
(in
_Site
)
getOrderedValues()
(in
OrderedDB
)
GLIDE_XPVIZ_PENAL_PHOBSC
(in
schrodinger.infra.mm
)
get_sidechain_att_atom()
(in
schrodinger.application.desmond.struc
)
getOtherBlockNames()
(in
_FEPIO
)
GLIDE_XPVIZ_PENAL_POLAR
(in
schrodinger.infra.mm
)
get_sidechain_indices()
(in
local_residue
)
getOtherBlockNames()
(in
_FFIO
)
GLIDE_XPVIZ_PENAL_POLARAT
(in
schrodinger.infra.mm
)
get_simbox_output_filename()
(in
schrodinger.application.desmond.config
)
getOutput()
(in
Stage
)
GLIDE_XPVIZ_PENAL_POLLIST
(in
schrodinger.infra.mm
)
get_single_bond_length()
(in
schrodinger.structutils.assignbondorders
)
getOutputFiles()
(in
Job
)
GLIDE_XPVIZ_PENAL_POLPAR
(in
schrodinger.infra.mm
)
get_solvent_cap_coordinates()
(in
ModelSystem
)
getOutputName()
(in
Stage
)
GLIDE_XPVIZ_PENAL_TWISTAM
(in
schrodinger.infra.mm
)
get_solvent_cap_coords()
(in
DrawSolventPanel
)
getOutputNames()
(in
Stage
)
GLIDE_XPVIZ_PENALTIES
(in
schrodinger.infra.mm
)
get_spec_dict()
(in
schrodinger.application.combiglide.utils
)
getParams()
(in
JobInputFrame
)
GLIDE_XPVIZ_PHOBATGROUP
(in
schrodinger.infra.mm
)
get_startup_dir()
(in
schrodinger.utils.fileutils
)
getParams()
(in
MultiInputFrame
)
GLIDE_XPVIZ_PHOBATSC
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amide_changeable
)
getParams()
(in
JobInputFrame
)
GLIDE_XPVIZ_PHOBATSCAT
(in
schrodinger.infra.mm
)
get_state_sites()
(in
amine_changeable
)
getParent()
(in
DebugTreeAdaptor
)
GLIDE_XPVIZ_PHOBATSCPAR
(in
schrodinger.infra.mm
)
get_state_sites()
(in
carboxyl_changeable
)
getParent()
(in
BaseTree
)
GLIDE_XPVIZ_PHOBCON_HB
(in
schrodinger.infra.mm
)
get_state_sites()
(in
histidine_changeable
)
getParent()
(in
CommonTree
)
GLIDE_XPVIZ_PHOBCON_LIG
(in
schrodinger.infra.mm
)
get_state_sites()
(in
rotatable_changeable
)
getParent()
(in
CommonTreeAdaptor
)
GLIDE_XPVIZ_PHOBCON_PAR
(in
schrodinger.infra.mm
)
get_state_sites()
(in
water_changeable
)
getParent()
(in
Tree
)
GLIDE_XPVIZ_PHOBCON_PROT
(in
schrodinger.infra.mm
)
get_structure_file_format()
(in
schrodinger.utils.fileutils
)
getParent()
(in
TreeAdaptor
)
GLIDE_XPVIZ_PHOBGROUP_NAT
(in
schrodinger.infra.mm
)
get_structure_sequences()
(in
schrodinger.protein.sequence
)
getPath()
(in
Grid
)
GLIDE_XPVIZ_PHOBGROUP_NRES
(in
schrodinger.infra.mm
)
get_subst_score()
(in
SubstCoreDatabase
)
getPath()
(in
PhaseDB
)
GLIDE_XPVIZ_PHOBGROUP_PARAM
(in
schrodinger.infra.mm
)
get_suite_year()
(in
schrodinger
)
getpdb
(in
schrodinger.protein
)
GLIDE_XPVIZ_PHOBGROUPS
(in
schrodinger.infra.mm
)
get_super_transformation_matrix()
(in
schrodinger.structutils.rmsd
)
getPercentScreenCurvePoints()
(in
Calculator
)
GLIDE_XPVIZ_PHOBPACK
(in
schrodinger.infra.mm
)
get_surfaces()
(in
schrodinger.application.bioluminate.pml_menus
)
getpickcategory()
(in
MaestroArrow
)
GLIDE_XPVIZ_PHOBSC
(in
schrodinger.infra.mm
)
get_temp_location()
(in
schrodinger.maestro.maestro
)
getpickid()
(in
MaestroArrow
)
GLIDE_XPVIZ_PICAT
(in
schrodinger.infra.mm
)
get_text_path()
(in
Perturbations
)
getPlotFigure()
(in
Plotter
)
GLIDE_XPVIZ_PICATAT
(in
schrodinger.infra.mm
)
get_time()
(in
Job
)
getPosition()
(in
SlidableHLine
)
GLIDE_XPVIZ_PICATATNUM
(in
schrodinger.infra.mm
)
get_time()
(in
schrodinger.pipeline.stage
)
getPosition()
(in
SlidableVLine
)
GLIDE_XPVIZ_PICATRES
(in
schrodinger.infra.mm
)
get_top_level_props()
(in
schrodinger.application.desmond.simulation_block_data
)
getPotentialDoubleBondAtoms()
(in
AssignBondOrders
)
GLIDE_XPVIZ_PICATRESNUM
(in
schrodinger.infra.mm
)
get_trait()
(in
DesmondTyper
)
getPotentialEnergyGenerator()
(in
PropertyCalculator
)
GLIDE_XPVIZ_POSENUM
(in
schrodinger.infra.mm
)
get_trait()
(in
McproTyper
)
getPrecision()
(in
CanvasFingerprintGenerator
)
GLIDE_XPVIZ_ROTBONDAT1
(in
schrodinger.infra.mm
)
get_trait()
(in
SysType
)
getPrereqs()
(in
BaseJob
)
GLIDE_XPVIZ_ROTBONDAT2
(in
schrodinger.infra.mm
)
get_trait()
(in
WatermapTyper
)
getPrimeEnergyByResidues()
(in
PropertyCalculator
)
GLIDE_XPVIZ_ROTBONDS
(in
schrodinger.infra.mm
)
get_translation_matrix()
(in
schrodinger.structutils.transform
)
getProgram()
(in
TokenRewriteStream
)
GLIDE_XPVIZ_STACK_ATNUM
(in
schrodinger.infra.mm
)
get_translation_vector()
(in
WaterMapAnaJob
)
getProgramName()
(in
App
)
GLIDE_XPVIZ_STACK_ATOM
(in
schrodinger.infra.mm
)
get_type()
(in
Bind
)
getProperty()
(in
LabelAtomByEntryIndex
)
GLIDE_XPVIZ_STACK_RES
(in
schrodinger.infra.mm
)
get_type()
(in
FcnCall
)
getProperty()
(in
LabelAtomByMolIndex
)
GLIDE_XPVIZ_STACK_RESNUM
(in
schrodinger.infra.mm
)
get_type()
(in
If
)
getProperty()
(in
LabelAtomByNumType
)
GLIDE_XPVIZ_STACKING
(in
schrodinger.infra.mm
)
get_type()
(in
Iter
)
getProperty()
(in
LabelAtomByOccupancy
)
GLIDE_XPVIZ_WATER_LIGAND
(in
schrodinger.infra.mm
)
get_type()
(in
Let
)
getProperty()
(in
LabelAtomByProp
)
GLIDE_XPVIZ_WATER_LIGAT
(in
schrodinger.infra.mm
)
get_type()
(in
Lit
)
getProperty()
(in
LabelAtomByVDW
)
GLIDE_XPVIZ_WATER_LIGLIST
(in
schrodinger.infra.mm
)
get_type()
(in
Node
)
getPropertyMinMax()
(in
PropFilterDialog
)
GLIDE_XPVIZ_WATER_LIGPAR
(in
schrodinger.infra.mm
)
get_type()
(in
Series
)
getPropertyNames()
(in
Project
)
GLIDE_XPVIZ_WATER_PROTAT
(in
schrodinger.infra.mm
)
get_type()
(in
String
)
getPropertyPrecision()
(in
Project
)
GLIDE_XPVIZ_WATER_PROTEIN
(in
schrodinger.infra.mm
)
get_type()
(in
Var
)
getProtFilename()
(in
RelaxFrame
)
GLIDE_XPVIZ_WATER_PROTLIST
(in
schrodinger.infra.mm
)
get_type()
(in
schrodinger.infra.propedit
)
getProtocol()
(in
_DesmondProt
)
GLIDE_XPVIZ_WATER_PROTPAR
(in
schrodinger.infra.mm
)
get_userdata_dir()
(in
schrodinger.utils.fileutils
)
getProtocol()
(in
_McproProt
)
GLIDE_XPVIZ_WATMOL
(in
schrodinger.infra.mm
)
get_val()
(in
schrodinger.utils.sea
)
getProtocol()
(in
_ProtItem
)
GLIDE_XPVIZ_WATMOLX
(in
schrodinger.infra.mm
)
get_value()
(in
Map
)
getQImage()
(in
sketcher
)
GLIDE_XPVIZ_WATMOLY
(in
schrodinger.infra.mm
)
get_vdw()
(in
Cms
)
getQPicture()
(in
TwoDWidget
)
GLIDE_XPVIZ_WATMOLZ
(in
schrodinger.infra.mm
)
get_vector_atoms_from_internal_coords()
(in
Membrane_Model
)
getQPicture()
(in
sketcher
)
GLIDE_XPVIZ_ZSTACK
(in
schrodinger.infra.mm
)
get_vector_magnitude()
(in
schrodinger.structutils.transform
)
getr()
(in
MaestroArrow
)
glideanalysis
(in
schrodinger.application.glide
)
get_velocity_array()
(in
_FepFrame
)
getradius()
(in
MaestroArrow
)
GLIDECONS_ACCEP
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
amide_changeable
)
getReadErrors()
(in
FormatReader
)
GLIDECONS_DONOR
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
amine_changeable
)
getReadErrors()
(in
StructureReader
)
GLIDECONS_INVALID
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
carboxyl_changeable
)
getReceptorID()
(in
StructuralInteractionFingerprintGenerator
)
GLIDECONS_METAL
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
changeable
)
getReferenceEntryId()
(in
ConsensusToolBar
)
GLIDECONS_NOE
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
histidine_changeable
)
getReferenceStructure()
(in
SimplifiedSequenceViewer
)
GLIDECONS_PHOB
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
rotatable_changeable
)
getRegions()
(in
AdvancedOptionsPanel
)
GLIDECONS_POSIT
(in
schrodinger.infra.mm
)
get_view_atoms()
(in
water_changeable
)
getRequirements()
(in
LocalhostJob
)
GlideJob
(in
schrodinger.application.glide.glide
)
get_visible_ws_asl()
(in
schrodinger.application.bioluminate.pml_menus
)
getRequirements()
(in
RequirementsJob
)
GlideSortStage
(in
schrodinger.pipeline.stages.glide
)
get_visible_ws_atoms()
(in
schrodinger.application.bioluminate.pml_menus
)
getResid()
(in
ResidueTools
)
global_logfh
(in
schrodinger.pipeline.pipeline
)
get_weight()
(in
Perturbations
)
getResidue()
(in
_StructureAtom
)
GLY_COLOR
(in
Rama
)
get_weight_symbol()
(in
Rama
)
getResidueAtomicNonPolarSASA()
(in
PropertyCalculator
)
GPHDB_COMPOUNDFIELD
(in
schrodinger.application.vsw.vswinput
)
get_windows_drive_sidebar_links()
(in
schrodinger.ui.qt.filedialog
)
getResidueAtomicPolarSASA()
(in
PropertyCalculator
)
grab()
(in
Workspace
)
get_workspace_structure()
(in
schrodinger.ui.qt.appframework
)
getResidueAtoms()
(in
Structure
)
grab_reorder_obj()
(in
Perturbations
)
get_xy_plot()
(in
schrodinger.application.desmond.mplchart
)
getResidueHydropathy()
(in
PropertyCalculator
)
gradient_criterion
(in
Minimizer
)
get_xy_plot_widget()
(in
schrodinger.application.desmond.mplchart
)
getResidueID()
(in
StructuralInteractionFingerprintGenerator
)
grammarFileName
(in
mexpLexer
)
get_xy_url()
(in
schrodinger.application.desmond.gchart
)
getResidueInteractionEnergy()
(in
PropertyCalculator
)
grammarFileName
(in
mexpParser
)
getAction()
(in
Factory
)
getResidueInternalEnergy()
(in
PropertyCalculator
)
graph
(in
schrodinger.application.lid.lid2d
)
getActiveProcCounts()
(in
JobDJ
)
getResidueList()
(in
ResidueTools
)
graphics3d
(in
schrodinger
)
getActiveRankCsvRows()
(in
Calculator
)
getResiduepKa()
(in
PropertyCalculator
)
GREATER
(in
schrodinger.application.bioluminate.propfilter
)
getAdjustedNJobs()
(in
Stage
)
getResiduePotentialEnergy()
(in
PropertyCalculator
)
greater
(in
schrodinger.protein.assignment
)
getAlignedMobileStructures()
(in
BindingSiteAligner
)
getResidueRotatableBonds()
(in
PropertyCalculator
)
greater_equal
(in
schrodinger.protein.assignment
)
getAll()
(in
FirstSecondaryStructure
)
getResidueSASA()
(in
PropertyCalculator
)
GREATEREQUAL
(in
schrodinger.application.bioluminate.propfilter
)
getAll()
(in
IntervalTree
)
getResiduesInRadius()
(in
ResidueTools
)
GREEN
(in
schrodinger.application.bioluminate.pml_menus
)
getAll()
(in
SecondSecondaryStructure
)
getResidueType()
(in
StructuralInteractionFingerprintGenerator
)
GREY
(in
schrodinger.application.bioluminate.pml_menus
)
getAllAuxListbox()
(in
PropertySelector
)
getResName()
(in
ResidueTools
)
grey_c
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
getAllBonds()
(in
HydrogenBondFinder
)
getResourceHolder()
(in
_JobManager
)
GRID
(in
schrodinger.application.vsw.vswinput
)
getAllPreferences()
(in
Preferences
)
getRestrGroup()
(in
RestraintsTab
)
GRID
(in
schrodinger.pipeline.pipeio
)
getAlpha()
(in
CanvasFingerprintSimilarity
)
getResults()
(in
HydrogenBondFinder
)
Grid
(in
schrodinger.pipeline.pipeio
)
getAncestor()
(in
BaseTree
)
getResults()
(in
AnalysisTool
)
grid
(in
VolumeMapper
)
getAncestor()
(in
Tree
)
getResultsGUI()
(in
CanvasFingerprintClusterGUI
)
grid()
(in
Table
)
getAncestors()
(in
BaseTree
)
getRmsdDataname()
(in
ConformerRmsd
)
grid()
(in
schroPmwWrapper
)
getAncestors()
(in
Tree
)
getRmsdDataname()
(in
ConformerRmsdX
)
grid()
(in
GroundClass
)
getApp()
(in
AppFramework
)
getROCAreaRomberg()
(in
Calculator
)
grid()
(in
schroWidget
)
getApplicationHeaderFields()
(in
Job
)
getROCCurvePoints()
(in
Calculator
)
Grid3D
(in
schrodinger.trajectory.analysis
)
getApplicationHeaderString()
(in
Job
)
getRotatableBondsGenerator()
(in
PropertyCalculator
)
grid_size
(in
Grid3D
)
getApplyGUI()
(in
CanvasFingerprintClusterGUI
)
getRotTran()
(in
Superimposer
)
Gridgen
(in
schrodinger.application.glide.glide
)
getArraySelection()
(in
FrameSliceSelection
)
getRow()
(in
ResiduesModel
)
gridgen_specs
(in
schrodinger.application.glide.glide
)
getAsl()
(in
AslLigandSearcher
)
getRow()
(in
StrucListModel
)
GridgenStage
(in
schrodinger.pipeline.stages.glide
)
getAtomBondTypingSchemeDescription()
(in
CanvasFingerprintGeneratorCLI
)
getRow()
(in
Project
)
GroundClass
(in
schrodinger.ui.widget.tkinterwidget
)
getAtomCount()
(in
JaguarInput
)
getRowData()
(in
ActiveDatabaseTable
)
Group
(in
schrodinger.graphics3d.common
)
getAtomGroups()
(in
AtomGroupFrame
)
getRowName()
(in
StrucListModel
)
group
(in
ProjectRow
)
getAtomicNonPolarSASAGenerator()
(in
PropertyCalculator
)
getRowTarget()
(in
StrucListModel
)
Group
(in
schrodinger.ui.widget.pmwwidget
)
getAtomicPolarSASAGenerator()
(in
PropertyCalculator
)
getRowText()
(in
PatternModel
)
group()
(in
CanvasFingerprintCluster
)
getAtomIndices()
(in
RMSF
)
getRSquaredList()
(in
CanvasFingerprintCluster
)
group1
(in
_FFIOStretchFBHW
)
getAtomIndices()
(in
FrameAslSelection
)
getRuleInvocationStack()
(in
BaseRecognizer
)
group2
(in
_FFIOStretchFBHW
)
getAtomIndices()
(in
FrameIndexSelection
)
getRuleMemoization()
(in
BaseRecognizer
)
groupAromaticRings()
(in
AssignBondOrders
)
getAtomIndices()
(in
FrameSliceSelection
)
getRuntimePath()
(in
Stage
)
GroupByConnectivity
(in
schrodinger.protein.findhets
)
getAtomList()
(in
Sequence
)
getSASAGenerator()
(in
PropertyCalculator
)
groupHidden()
(in
Primitive
)
getAtomList()
(in
_Chain
)
getSASANonPolarGenerator()
(in
PropertyCalculator
)
groups
(in
Project
)
getAtomList()
(in
_Molecule
)
getSASAPolarGenerator()
(in
PropertyCalculator
)
groups()
(in
AddNeighborGroups
)
getAtomList()
(in
_Residue
)
getSaveFileName()
(in
FileDialog
)
groups()
(in
GroupByConnectivity
)
getAtomList()
(in
_Ring
)
getSbcFileName()
(in
SbcFrame
)
groupShown()
(in
Primitive
)
getAtomsInResidue()
(in
ResidueTools
)
getScanStep()
(in
JaguarOutput
)
grow_fragment()
(in
schrodinger.protein.helix
)
getAtomTotal()
(in
JaguarResults
)
getSelected()
(in
PropertySelector
)
growname
(in
_StructureAtom
)
getAttachmentAtoms()
(in
_LigMut
)
getSelected()
(in
PropertySelectorMenu
)
guess_value_type()
(in
Atom
)
getAttachmentAtoms()
(in
_RingMut
)
getSelectedDataTitles()
(in
ReportFrame
)
gui
(in
schrodinger.application.desmond
)
getAverageDistanceFromCentroid()
(in
CanvasFingerprintCluster
)
getSelectedLigand()
(in
ChooseLigandDialog
)
gui()
(in
App
)
getAxisExtreme()
(in
SlidableHLine
)
getSelectedPatternName()
(in
LigfilterFrame
)
GuiApp
(in
schrodinger.application.desmond.gui
)
getAxisExtreme()
(in
SlidableVLine
)
getSelectedRows()
(in
Table
)
guide
(in
schrodinger.application.desmond
)
getb()
(in
MaestroArrow
)
getSelectedRowTotal()
(in
Table
)
Guide
(in
schrodinger.application.desmond.guide
)
getBacktrackingLevel()
(in
BaseRecognizer
)
getSelectedRowTotal()
(in
Project
)
guide
(in
schrodinger.application.mcpro
)
getBaroMethod()
(in
EnsembleTab
)
getSelectedX()
(in
SliderPlot
)
Guide
(in
schrodinger.application.mcpro.guide
)
getBending()
(in
Minimizer
)
getSelectedXY()
(in
SliderPlot
)
GuiMap
(in
schrodinger.application.desmond.mdkey
)
getBendingEnergy()
(in
Minimizer
)
getSelectionString()
(in
sketcher
)
gvblmp2()
(in
schrodinger.application.jaguar.output
)
getBestDoubleBond()
(in
AssignBondOrders
)
getSelfEnergy()
(in
Minimizer
)
GXG_DATA
(in
Mutator
)
getBestNumberOfClusters()
(in
CanvasFingerprintCluster
)
getSemiPartialRSquaredList()
(in
CanvasFingerprintCluster
)
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