[ Identifiers | To Do | Deprecations ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

S

s_ (in schrodinger.protein.assignment)	setItems() (in MultiSelectComboBox)	sig_pos_esp_prop (in MopacResults)
s_min_eval() (in schrodinger.application.jaguar.output)	setItems() (in PatternModel)	sig_tot_alea_prop (in MopacResults)
SAction (in schrodinger.application.bioluminate.actions.factory)	setitems() (in OptionMenu)	sig_tot_alie_prop (in MopacResults)
sameMolAtoms() (in GroupByConnectivity)	setJobDJOptions() (in Stage)	sig_tot_esp_prop (in MopacResults)
sample_combinations() (in EnsembleSelection)	setJobname() (in StartDialog1)	sigma (in _FFIOAngleFBHW)
SampleRingsStage (in schrodinger.pipeline.stages.macromodel)	setJobname() (in StartDialog2)	sigma (in _FFIOImproperFBHW)
sanityCheckParentAndChildIndexes() (in BaseTree)	setJobName() (in App)	sigma (in _FFIOPosFBHW)
SASA_PROBE_RADIUS (in schrodinger.application.lid.lid2d.compute)	setJobOptions() (in Stage)	sigma (in _FFIOStretchFBHW)
SAVE (in schrodinger.application.mopac)	setJobProgress() (in _Backend)	sign (in schrodinger.protein.assignment)
SAVE (in schrodinger.utils.cmdline)	setJobProgress() (in _Backend)	signbit (in schrodinger.protein.assignment)
save() (in JaguarInput)	setKeyword() (in MopacCalculation)	signedExpComp() (in mexpParser)
save() (in App)	setLastRewriteTokenIndex() (in TokenRewriteStream)	signedExpComp_return (in mexpParser)
save() (in HuntCache)	setLIDMode() (in sketcher)	sigtot (in JaguarResults)
save() (in Rama)	setLigandCleanupOptions() (in Minimizer)	simBuser() (in CanvasFingerprintSimilarity)
save_ct_in_2d_with_coords() (in schrodinger.application.lid.lid2d.render)	setLigNumPoseNum() (in _XpDesBlock)	simCosine() (in CanvasFingerprintSimilarity)
save_new_color() (in schrodinger.application.bioluminate.pml_menus)	setLigRange() (in Dock)	simDice() (in CanvasFingerprintSimilarity)
save_pic_to_file() (in schrodinger.application.lid.lid2d.render)	setLine() (in ANTLRStringStream)	simDixon() (in CanvasFingerprintSimilarity)
saveAs() (in JaguarInput)	setLine() (in CharStream)	simEuclidean() (in CanvasFingerprintSimilarity)
SaveFileDialog (in schrodinger.application.lid.ligand_interaction_diagram_gui)	setLine() (in ClassicToken)	simHamann() (in CanvasFingerprintSimilarity)
savePlot() (in Calculator)	setLine() (in CommonToken)	simHamming() (in CanvasFingerprintSimilarity)
savePlot() (in Plotter)	setLine() (in Token)	similarity (in schrodinger.application.canvas)
saveQPicToEPSFile() (in App)	setLinkage() (in CanvasFingerprintCluster)	SIMILARITY_METRICS (in CanvasFingerprintSimilarity)
saveQPicToFile() (in App)	setMainProduct() (in Stage)	similaritygui (in schrodinger.application.canvas)
SB_CMD (in SystemBuilder)	setmaterial() (in MaestroArrow)	simKulczynski() (in CanvasFingerprintSimilarity)
SbcFrame (in schrodinger.ui.macromodel)	setMembrane() (in SystemBuilderInput)	simMatching() (in CanvasFingerprintSimilarity)
SbcUtil (in schrodinger.application.macromodel.utils)	setMembranePatch() (in SystemBuilderInput)	simMcConnaughey() (in CanvasFingerprintSimilarity)
ScalarType (in schrodinger.protein.assignment)	setMembranize() (in SystemBuilderInput)	simMinMax() (in CanvasFingerprintSimilarity)
Scale (in schrodinger.ui.widget.tkinterwidget)	setMessageColors() (in sketcher)	simModifiedTanimoto() (in CanvasFingerprintSimilarity)
scale_vertices() (in schrodinger.graphics3d.polyhedron)	setMetric() (in CanvasFingerprintSimilarity)	SimOptionsFrame (in schrodinger.application.desmond.gui)
scan (in schrodinger.application.jaguar)	setMetricCB() (in CanvasFingerprintSimilarityGUI)	simPatternDifference() (in CanvasFingerprintSimilarity)
Scan (in schrodinger.application.jaguar.scan)	setMMFepioMapModeOption() (in SystemBuilderInput)	simPearson() (in CanvasFingerprintSimilarity)
scan_coordinates() (in schrodinger.application.jaguar.output)	setModelData() (in EditableDelegate)	simPetke() (in CanvasFingerprintSimilarity)
scan_step (in JaguarOutput)	setModelData() (in ResiduesDelegate)	SIMPLE_CODE (in schrodinger.application.desmond.gchart)
scf_FAIL (in MopacResults)	setModelData() (in AtomGroupDelegate)	SIMPLE_ENCODING_CHAR (in schrodinger.application.desmond.gchart)
scf_OK (in MopacResults)	setModelData() (in PosResDelegate)	SIMPLE_ENCODING_RANGE (in schrodinger.application.desmond.gchart)
scfe() (in schrodinger.application.jaguar.output)	setModelData() (in TempItemDelegate)	SIMPLE_ENCODING_RESOLUTION (in schrodinger.application.desmond.gchart)
ScfIteration (in schrodinger.application.jaguar.output)	setMultiplePatternCriterionState() (in LigfilterFrame)	SimplePreset (in schrodinger.application.bioluminate.pml_menus)
SCHEMES (in AntibodyNumberingToolBar)	setMultiplePredefinedCriterionState() (in LigfilterFrame)	SimpleSyntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)
schrod_atom_exch (in schrodinger.protein.remediate)	setMultiplePropCriterionState() (in LigfilterFrame)	SimplifiedSequenceViewer (in schrodinger.application.bioluminate.ssv.viewer)
schrodinger	setNegativeIon() (in SystemBuilderInput)	simRogersTanimoto() (in CanvasFingerprintSimilarity)
SCHRODINGER (in CONST)	setNeutralize() (in SystemBuilderInput)	simShape() (in CanvasFingerprintSimilarity)
SCHRODINGER (in schrodinger.infra.mm)	setNonUniqueIds() (in FingerprintFromFileGenerator)	simSimpson() (in CanvasFingerprintSimilarity)
SCHRODINGER (in schrodinger.utils.ligfilter)	setNRequired() (in Dock)	simSize() (in CanvasFingerprintSimilarity)
schrodinger_dir (in schrodinger.job.remote_command)	setNumClusters() (in CanvasFingerprintClusterGUI)	simSoergel() (in CanvasFingerprintSimilarity)
schrodinger_run() (in schrodinger.application.bioluminate.protein)	setopacity() (in MaestroArrow)	simTanimoto() (in CanvasFingerprintSimilarity)
SCHRODINGER_UTILITIES (in CONST)	setOpcdArgs() (in ComUtil)	simTimeChanged() (in SimOptionsFrame)
schroPmwWrapper (in schrodinger.ui.widget.pmwwidget)	setOpcdArgs() (in SbcUtil)	simTversky() (in CanvasFingerprintSimilarity)
schroutils (in schrodinger.application.lid.lid2d)	setOplsaaVersion() (in SystemBuilderInput)	Simulate
schroWidget (in schrodinger.ui.widget.tkinterwidget)	setOption() (in SDWriter)	simulateTreeConstruction() (in DebugTreeAdaptor)
score_combination() (in hbond_cluster)	setOption() (in StructureWriter)	simulation_block_data (in schrodinger.application.desmond)
score_donor_acceptor() (in hbond_cluster)	setOption() (in _BaseWriter)	simulation_block_test (in schrodinger.application.desmond)
score_donor_donor() (in hbond_cluster)	setOptions() (in Pipeline)	simVariance() (in CanvasFingerprintSimilarity)
score_exhaustively() (in hbond_cluster)	setOptions() (in Minimizer)	simYule() (in CanvasFingerprintSimilarity)
score_ligand() (in schrodinger.application.watermap.watermap_scoring)	setOrigin() (in Grid3D)	sin (in schrodinger.protein.assignment)
score_pair() (in hbond_cluster)	setOutput() (in Stage)	single_point() (in hbond_cluster)
score_sequentially() (in hbond_cluster)	setOutputName() (in Stage)	single_point_cluster() (in ProtAssign)
SCRIPT (in Startup)	setOverlappedHydrationSites() (in App)	SINGLE_PROTEIN (in schrodinger.application.bioluminate.actions.icons)
script_dir() (in schrodinger.application.jaguar)	setParent() (in DebugTreeAdaptor)	SingleDashOption
SCRIPTS (in schrodinger.infra.mm)	setParent() (in BaseTree)	SingleDashOptionParser
SCRIPTS (in schrodinger.utils.preferences)	setParent() (in CommonTree)	sinh (in schrodinger.protein.assignment)
Scrollbar (in schrodinger.ui.widget.tkinterwidget)	setParent() (in CommonTreeAdaptor)	Site (in schrodinger.application.desmond.cms)
scrollContentsBy() (in sketcherView)	setParent() (in Tree)	site (in _FFIOSite)
ScrolledCanvas (in schrodinger.ui.widget.pmwwidget)	setParent() (in TreeAdaptor)	site() (in Cms)
ScrolledFrame (in schrodinger.ui.widget.pmwwidget)	setPatternOptions() (in LigfilterFrame)	site() (in _FFIO)
ScrolledListBox (in schrodinger.ui.widget.pmwwidget)	setpickcategory() (in MaestroArrow)	site_builtin_prop (in schrodinger.trajectory.ffstructure)
ScrolledText (in schrodinger.ui.widget.pmwwidget)	setpickid() (in MaestroArrow)	site_name (in _FFSite)
ScrollHint	setpKaData() (in PropertyCalculator)	sitealign (in schrodinger.structutils)
ScrollMode	setPlotType() (in ClusterStatisticsPlotDialog)	SITEMAP_MAIN (in schrodinger.infra.licensing)
scrollToShowRow() (in WidgetTable)	setPlotType() (in DistanceMatrixPlotDialog)	SiteMatchLookup (in schrodinger.structutils.sitealign)
sctypeDict (in schrodinger.protein.assignment)	setPosition() (in SlidableHLine)	size() (in DebugTokenStream)
sctypeNA (in schrodinger.protein.assignment)	setPosition() (in SlidableVLine)	size() (in ANTLRStringStream)
sctypes (in schrodinger.protein.assignment)	setPositiveIon() (in SystemBuilderInput)	size() (in CommonTokenStream)
SD (in schrodinger.utils.fileutils)	setPrecision() (in CanvasFingerprintGenerator)	size() (in IntStream)
SDReader (in schrodinger.structure)	setProgramName() (in App)	size() (in CommonTreeNodeStream)
SDWriter (in schrodinger.structure)	setProgress() (in AppFramework)	size() (in RewriteRuleElementStream)
se_prop (in MopacResults)	setProgressError() (in AppFramework)	size() (in Bitset)
se_tot_prop (in MopacResults)	setProperties() (in PropFilterDialog)	size() (in _FepTrajectory)
sea (in schrodinger.utils)	setProperties() (in LigfilterFrame)	size() (in MultiListbox)
Sea (in schrodinger.utils.sea)	setProperties() (in PropertySelector)	size2D() (in schrodinger.application.lid.lid2d.utils)
SEAFOAM (in schrodinger.application.bioluminate.pml_menus)	setProperties() (in PropertySelectorMenu)	SizeAdjustPolicy
SeaJob	setQLinkage() (in CanvasFingerprintClusterGUI)	ska (in schrodinger.application)
search() (in AslLigandSearcher)	setr() (in MaestroArrow)	SkaData (in schrodinger.application.ska)
search_antibody() (in schrodinger.application.bioluminate.antibody.utils)	setradius() (in MaestroArrow)	sketcher (in schrodinger.ui)
search_antibody() (in schrodinger.application.bioluminate.antibody_utils)	setReceptorStructure() (in StructuralInteractionFingerprintGenerator)	sketcher (in schrodinger.ui.sketcher)
SearchType (in schrodinger.antibody_db_manage_gui)	setReplica() (in StartDialog1)	sketcherGUIMultiColumnToolBar (in schrodinger.ui.sketcher)
secondary_structure (in _Residue)	setReplica() (in StartDialog2)	sketcherView (in schrodinger.ui.sketcher)
secondary_structure (in _StructureAtom)	setReplica() (in _SdDetailFrame)	skip() (in Lexer)
SecondaryStructure (in schrodinger.trajectory.analysis)	setReplica() (in _SdJobFrame)	SKIP_TOKEN (in schrodinger.application.desmond.antlr3.tokens)
SecondSecondaryStructure	setReplica() (in _SdSubjobFrame)	skipOffTokenChannels() (in CommonTokenStream)
SecondSecondaryStructureSortOrder (in schrodinger.application.lid.lid2d.intervaltree2d)	setResidues() (in Refiner)	skipOffTokenChannelsReverse() (in CommonTokenStream)
see() (in MultiListbox)	setRowCallback() (in WidgetTable)	SLATE (in schrodinger.application.bioluminate.pml_menus)
seek() (in DebugTokenStream)	setRowHeight() (in WidgetTable)	sliceProp() (in schrodinger.infra.propedit)
seek() (in ANTLRStringStream)	setRows() (in ActiveDatabaseTable)	SlidableHLine (in schrodinger.application.bioluminate.sliderchart)
seek() (in CommonTokenStream)	setRows() (in AtomGroupModel)	SlidableLine (in schrodinger.application.bioluminate.sliderchart)
seek() (in IntStream)	setRows() (in PosResModel)	SlidableVLine (in schrodinger.application.bioluminate.sliderchart)
seek() (in CommonTreeNodeStream)	setSaltNegativeIon() (in SystemBuilderInput)	sliderchart (in schrodinger.application.bioluminate)
sel_rows() (in Table)	setSaltPositiveIon() (in SystemBuilderInput)	sliderMoved() (in MultiReportWithChart)
Select (in schrodinger.application.bioluminate.pml_menus)	setsAreSame() (in schrodinger.application.lid.ligand_interaction_diagram_gui)	SliderPlot (in schrodinger.application.bioluminate.sliderchart)
SELECT (in schrodinger.application.bioluminate.propfilter)	setSearchColumns() (in DBManagePanel)	SLOW (in schrodinger.application.moldescriptors)
select() (in PropertySelectorMenu)	setSelectCallback() (in WidgetTable)	SMALL_FONT (in schrodinger.ui.appframework)
select() (in _Cell)	setSelectedHydrationSites() (in App)	SMALL_FONT (in schrodinger.ui.widget.default)
select() (in _Row)	setSelectedValues() (in PropFilterDialog)	SMALL_FONT (in schrodinger.ui.widget.tkinterwidget)
select_atom() (in Cms)	setShownRow() (in StrucListModel)	SMALL_RESIDUES (in schrodinger.structutils)
select_atom_comp() (in Cms)	setSiteMatches() (in BindingSiteAligner)	SMARTS (in schrodinger.utils.ligfilter)
select_n_rows() (in Table)	setSize() (in MMIMArgList)	SmartsCriterion (in schrodinger.utils.ligfilter)
select_row() (in Table)	setSlice() (in AnalysisTool)	smiles (in schrodinger.structure)
selectAddRows() (in Table)	setSolute() (in SystemBuilderInput)	smiles (in schrodinger.structutils.analyze)
selectAll() (in PropertySelector)	setSoluteAlignment() (in SystemBuilderInput)	smiles (in schrodinger.structutils.rmsd)
selectAll() (in WidgetTable)	setSolvate() (in SystemBuilderInput)	smiles (in schrodinger.structutils)
selectAllRows() (in WidgetTable)	setSolvent() (in SystemBuilderInput)	SMILES (in schrodinger.utils.fileutils)
selectAtomGroupAsl() (in AtomGroupFrame)	setSolventExposureForAtom() (in sketcher)	smiles_import_failed (in schrodinger.structutils.analyze)
selected() (in WidgetTable)	setSortFunc() (in _Column)	SMILESCSV (in schrodinger.utils.fileutils)
selected_atoms_get() (in schrodinger.maestro.maestro)	setStageOptions() (in Pipeline)	SmilesCsvReader (in schrodinger.structure)
selected_atoms_get_asl() (in schrodinger.maestro.maestro)	setState() (in PropertySelector)	SmilesCsvWriter (in schrodinger.structure)
selected_bitset (in _AtomSelection)	setStatusIncorporated() (in Job)	SmilesErrorHandler (in schrodinger.structutils.smilesfilter)
SELECTED_ENTRIES (in JobInputFrame)	setStdOutErrFile() (in Launcher)	smilesfilter (in schrodinger.structutils)
SELECTED_ENTRIES (in schrodinger.ui.qt.appframework)	setString() (in sketcher)	SmilesGenerator (in schrodinger.structutils.smiles)
selected_indices (in _AtomSelection)	setStructure() (in JaguarInput)	SmilesReader (in schrodinger.structure)
selected_rows (in EntryGroup)	setStructure() (in ProjectRow)	SmilesStructure (in schrodinger.structure)
selected_rows (in Project)	setStructure() (in Minimizer)	SmilesWriter (in schrodinger.structure)
selected_sequences (in SimplifiedSequenceViewer)	setStructure() (in sketcher)	sn_prop (in MopacResults)
SelectedAtomContextActionSubMenu (in schrodinger.application.bioluminate.pml_menus)	setStructureFile() (in QSiteInput)	sn_tot_prop (in MopacResults)
SelectedAtomContextMenu (in schrodinger.application.bioluminate.pml_menus)	setStructureMonitorFile() (in _Backend)	SoftKeyRole
selectFilterColumns() (in DBManagePanel)	setStructureMonitorFile() (in Launcher)	solution_phase() (in schrodinger.application.jaguar.output)
SelectingFilteredListWidget (in schrodinger.application.bioluminate.propfilter)	setStructureOutput() (in Writer)	solv_exp_radius_diff (in schrodinger.application.lid.lid2d.draw)
selection_anchor() (in MultiListbox)	setStructureOutputFile() (in _Backend)	SOLVATE_POCKET_CMD (in SolvatePocket)
selection_clear() (in MultiListbox)	setStructureOutputFile() (in Launcher)	SolvatePocket
selection_includes() (in MultiListbox)	setStructureOutputFileBE() (in App)	solvation() (in schrodinger.application.jaguar.output)
selection_set() (in MultiListbox)	setStructureOutputFileFE() (in App)	solvation_charge (in _StructureAtom)
SelectionBehavior	setStyle() (in Polyhedron)	solvation_job() (in schrodinger.application.jaguar.output)
selectionChanged() (in PhaseDatabaseOpenDialog)	setStyle() (in _StructureBond)	SOLVENT (in schrodinger.application.bioluminate.pml_menus)
selectionChanged() (in sketcher)	setSubs() (in SbcUtil)	SOLVENT (in BuildGeometry)
selectionChangedCallback() (in ReportFrame)	setTableResizeCallback() (in WidgetTable)	SOLVENT (in SystemBuilder)
selectionChangedCallback() (in _LigMut)	setText() (in DebugTreeAdaptor)	solvent (in schrodinger.application.mcpro)
selectionChangedCallback() (in _ProMut)	setText() (in Lexer)	SOLVENT_AND_IONS (in schrodinger.application.bioluminate.pml_menus)
selectionChangedCallback() (in _RingMut)	setText() (in ClassicToken)	solventSelectToggle() (in DrawSolventPanel)
SelectionMode	setText() (in CommonToken)	solvexp_c (in schrodinger.application.lid.lid2d.draw)
SelectionSubMenu (in schrodinger.application.bioluminate.pml_menus)	setText() (in Token)	solvexp_c_bw (in schrodinger.application.lid.lid2d.draw)
selectOnly() (in _Cell)	setText() (in BaseTreeAdaptor)	sort (in schrodinger.structutils)
selectOnly() (in _Row)	setText() (in TreeAdaptor)	sort() (in DataModel)
selectOnlyByEntry() (in SimplifiedSequenceViewer)	setText() (in EntryField)	sort() (in DataModelWithChart)
selectOnlyBySeqs() (in SimplifiedSequenceViewer)	setText() (in FileEntry)	sort() (in StructureFileSorter)
selectPattern() (in LigfilterFrame)	setText() (in MultiSelectComboBox)	sort() (in WidgetTable)
selectPosResAsl() (in RestraintsTab)	setText() (in _EntryField)	SORT_CHOICES (in schrodinger.analysis.enrichment)
selectPredefined() (in LigfilterFrame)	setThermoMethod() (in EnsembleTab)	sort_file() (in schrodinger.structutils.sort)
selectProperty() (in PropFilterDialog)	settings() (in DrawDdgPanel)	sort_file_in_memory() (in schrodinger.structutils.sort)
selectProperty() (in LigfilterFrame)	settings() (in DrawFepPanel)	sort_first_element() (in schrodinger.application.lid.lid2d.utils)
selectRows() (in MultiReportWithChart)	settings() (in DrawLrmPanel)	sort_paths_by_number_of_atoms_on_side() (in schrodinger.application.lid.lid2d.graph)
selectRows() (in Table)	settings() (in DrawMcPanel)	sort_posre() (in schrodinger.application.desmond.cms)
selectRows() (in Project)	settings() (in DrawMiniPanel)	sortBondableAtomsByGroups() (in AssignBondOrders)
SelectWithinAny (in schrodinger.application.bioluminate.pml_menus)	settings() (in ModelSystemPanel)	sortByProperties() (in PoseLibrary)
SelectWithinCalpha (in schrodinger.application.bioluminate.pml_menus)	settings() (in DrawSolventPanel)	sortEntryCheck() (in CanvasFingerprintSimilarityGUI)
SelectWithinChain (in schrodinger.application.bioluminate.pml_menus)	setTokenBoundaries() (in DebugEventListener)	sortFirstThreeOfGroup() (in AssignBondOrders)
SelectWithinEntry (in schrodinger.application.bioluminate.pml_menus)	setTokenBoundaries() (in DebugEventSocketProxy)	sortInterTitle() (in PoseLibrary)
SelectWithinMolecule (in schrodinger.application.bioluminate.pml_menus)	setTokenBoundaries() (in DebugTreeAdaptor)	sortIntraTitle() (in PoseLibrary)
SelectWithinResidue (in schrodinger.application.bioluminate.pml_menus)	setTokenBoundaries() (in TraceDebugEventListener)	sortPoses() (in PoseLibrary)
self_docking_rmsd() (in EnsembleSelection)	setTokenBoundaries() (in CommonTreeAdaptor)	sortResiduesByDistance() (in ResidueTools)
semanticPredicate() (in DebugEventListener)	setTokenBoundaries() (in TreeAdaptor)	sortRows() (in schrodinger.application.lid.ligand_interaction_diagram_gui)
semanticPredicate() (in DebugEventSocketProxy)	setTokenIndex() (in ClassicToken)	sortRows() (in Table)
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	setTokenIndex() (in CommonToken)	SP (in schrodinger.application.glide.glide)
SEMI (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	setTokenIndex() (in Token)	SP2_TAR (in _RingMut)
semiemp (in schrodinger.application.vsw.stages)	setTokenSource() (in CommonTokenStream)	SP3_TAR (in _RingMut)
semiemp (in schrodinger.pipeline.stages)	setTokenStartIndex() (in CommonTree)	space_RE (in schrodinger.infra.propedit)
SemiEmpStage (in schrodinger.pipeline.stages.semiemp)	setTokenStartIndex() (in Tree)	SpaceContextMenu (in schrodinger.application.bioluminate.pml_menus)
sender() (in sketcher)	setTokenStopIndex() (in CommonTree)	spacing (in schrodinger.protein.assignment)
sender() (in sketcherGUIMultiColumnToolBar)	setTokenStopIndex() (in Tree)	spacing (in Grid3D)
sender() (in sketcherView)	setTokenStream() (in Parser)	spdicetemplate (in schrodinger.application.glide.xp6classes)
sendHostsToUse() (in StageJob)	setTokenStream() (in CommonTreeNodeStream)	spec_str (in schrodinger.application.prime.input)
sendMessage() (in Job)	setTokenTypeChannel() (in CommonTokenStream)	SPECIAL (in schrodinger.structutils.interactions)
sendMessageToParent() (in _Backend)	setToolBars() (in ViewerWindow)	specialStateTransition() (in DFA)
sendMessageToSubjob() (in _Backend)	setTreeAdaptor() (in DebugEventSocketProxy)	sphere (in schrodinger.graphics3d)
sendMessageToSubjobs() (in _Backend)	setTreeAdaptor() (in mexpParser)	Sphere (in schrodinger.graphics3d.sphere)
SEPARATOR_RE (in schrodinger.application.bioluminate.actions.factory)	setTreeNodeStream() (in TreeParser)	SphereCore (in schrodinger.graphics3d.sphere)
sequence (in schrodinger.protein)	setType() (in CanvasFingerprintGenerator)	SPINBOX (in Table)
Sequence (in schrodinger.protein.sequence)	setType() (in DebugTreeAdaptor)	Spinbox (in schrodinger.ui.widget.tkinterwidget)
SEQUENCE_VIEWER (in schrodinger.application.bioluminate.actions.configs)	setType() (in ClassicToken)	SPLAT (in JaguarOutput)
sequencealignment (in schrodinger.ui)	setType() (in CommonToken)	split() (in schrodinger.infra.propedit)
sequenceContextCallback() (in SimplifiedSequenceViewer)	setType() (in Token)	split_ct() (in schrodinger.application.desmond.remd)
SequenceDockWidget (in schrodinger.application.bioluminate.ssv.viewer)	setType() (in BaseTreeAdaptor)	split_file() (in schrodinger.structutils.sort)
SequenceFileDialog (in schrodinger.application.bioluminate.bwidgets)	setType() (in TreeAdaptor)	split_structure_files() (in schrodinger.application.jaguar.input)
sequencesImported() (in SimplifiedSequenceViewer)	setUniqueIdsOnly() (in FingerprintFromFileGenerator)	splitext() (in schrodinger.utils.fileutils)
serial_split() (in schrodinger.application.macromodel.tools)	setUniqueNavigationNodes() (in CommonTreeNodeStream)	splitJobOutputs() (in ConfSearchStage)
serialize() (in Engine)	setUniqueNavigationNodes() (in TreeNodeStream)	splitResid() (in ResidueTools)
serialize() (in PickleJar)	setUnknownTokenBoundaries() (in CommonTree)	splitResidueUID() (in schrodinger.application.lid.lid2d.schroutils)
serialize() (in Extern)	setUp() (in ParserMain)	splitTriangularGroup() (in AssignBondOrders)
serializeNode() (in DebugEventSocketProxy)	setUp() (in WalkerMain)	spmc() (in ComUtil)
serializeToken() (in DebugEventSocketProxy)	setUp() (in _Main)	spread_residues_if_overlapped() (in schrodinger.application.lid.ligand_interaction_diagram)
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	setup() (in StartDialogBase)	square (in schrodinger.protein.assignment)
SERIES (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	setup() (in ConstraintGroup)	squared_centroid_distance() (in schrodinger.structutils.interactions)
Series (in schrodinger.application.desmond.enhsamp)	setup() (in Dock)	sr_prop (in MopacResults)
series() (in mexpParser)	setup() (in GlideJob)	sr_tot_prop (in MopacResults)
series_return (in mexpParser)	setup() (in Gridgen)	SS_HELIX (in schrodinger.structure)
set() (in JobStatus)	setup() (in ConfSearch)	SS_LOOP (in schrodinger.structure)
set() (in Bitset)	setup() (in EmbraceConfSearch)	SS_NONE (in schrodinger.structure)
set() (in Superimposer)	setup() (in EmbraceMinimization)	SS_STRAND (in schrodinger.structure)
set() (in DialogParameters)	setup() (in EnergyListing)	SS_TURN (in schrodinger.structure)
set() (in DialogParameters)	setup() (in Minimization)	ssv (in schrodinger.application.bioluminate)
set() (in Preferences)	setup() (in Minta)	st (in Ligand)
set_active_databases() (in schrodinger.application.bioluminate.antibody.utils)	setup() (in RCE)	st_matches_criteria() (in schrodinger.utils.ligfilter)
set_all_databases() (in schrodinger.application.bioluminate.antibody.utils)	setup() (in _MacroModel)	stage (in _FEPIO)
set_atom_group() (in Cms)	setup() (in BaseJob)	stage (in schrodinger.application.desmond)
set_atom_group() (in SystemBuilder)	setup() (in ProtAssign)	stage (in schrodinger.application.desmond.stage)
set_atom_group_from_asl() (in Cms)	setup() (in AppJobInputFrame)	stage (in schrodinger.pipeline)
set_availability() (in _DispOpt)	setup() (in LigfilterFrame)	Stage (in schrodinger.pipeline.stage)
set_bg() (in TableButton)	setup() (in AsetFrame)	stage_cls (in StageBase)
set_bg() (in TableEntryField)	setup() (in LoopFrame)	STAGE_FAMILY (in schrodinger.application.desmond.stage)
set_bg() (in TableSpinbox)	setup() (in MiniFrame)	stage_obj (in StageBase)
set_bg() (in TableTextButton)	setup() (in PotentialFrame)	StageBase (in schrodinger.application.desmond.cmj)
set_bg() (in _TableWidget)	setup() (in SbcFrame)	StageInput (in schrodinger.pipeline.stage)
set_chop_rad() (in _ChopCap)	setup() (in JobInputFrame)	StageJob (in schrodinger.pipeline.pipeline)
set_colors() (in MaestroArrow)	setup_local_static() (in hbond_cluster)	StageOutput (in schrodinger.pipeline.stage)
set_colors() (in schrodinger.maestro.maestro)	setup_local_static_alt() (in hbond_cluster)	stages (in schrodinger.application.vsw)
set_coords() (in MaestroArrow)	setup_mopac_arrays (in schrodinger.infra.mopac)	stages (in schrodinger.pipeline)
set_coords() (in schrodinger.maestro.maestro)	setup_protein() (in Report)	standard_residues_hash (in schrodinger.application.mcpro.modelsystemwizard)
set_coords2() (in schrodinger.maestro.maestro)	setup_sphere() (in DrawSolventPanel)	START (in StartDialog)
set_current_application_panel_callback() (in schrodinger.maestro.maestro)	setup_xtal() (in hbond_cluster)	START (in StartDialog)
set_deletable() (in Entry)	setupAdvancedDialog() (in AdvOptionsFrame)	start() (in PickAtomToggle)
set_deletable() (in EntryGroup)	setupAset() (in ComUtil)	start() (in PickBondToggle)
set_docking_configuration() (in schrodinger.maestro.maestro)	setupConfSearchOptions() (in _MacroModel)	start() (in Primer)
set_dummy_geometry() (in schrodinger.application.mcpro.perturbations)	setupEnergyListingOptions() (in _MacroModel)	start() (in _PickToggle)
set_entryimport_opts() (in schrodinger.protein.getpdb)	setupFile() (in JobInputParams)	start() (in IncrementalTimer)
set_exp_dg() (in EnsembleSelection)	setupFile() (in JobInputParams)	start_geometry() (in schrodinger.application.jaguar.output)
set_family() (in Task)	setupFiles() (in MultiInputParams)	start_of_program() (in schrodinger.application.jaguar.output)
set_farterm() (in schrodinger.application.desmond.mdkey)	setupFiles() (in JobInputParams)	start_picking() (in schrodinger.maestro.maestro)
set_flex_rad() (in _Flex)	setupGeneralOptions() (in _MacroModel)	start_progress() (in schrodinger.application.bioluminate.pml_menus)
set_freezing_atommass() (in schrodinger.application.desmond.remd)	setupHostLayout() (in StartDialog)	StartDialog (in schrodinger.ui.appframework)
set_geometry_variations() (in Zmat)	setupInitialRunParams() (in WriteInputs)	StartDialog (in schrodinger.ui.qt.appframework)
set_gscores() (in EnsembleSelection)	setupJobParameters() (in AppFramework)	StartDialog1 (in schrodinger.application.desmond.cwidget)
set_lid_info() (in App)	setupJobParameters() (in AppFramework)	StartDialog2 (in schrodinger.application.desmond.cwidget)
set_material() (in schrodinger.maestro.maestro)	setupJobs() (in GeneratePropsStage)	StartDialogBase (in schrodinger.application.desmond.cwidget)
set_opener() (in schrodinger.protein.getpdb)	setupJobs() (in LigFilterStage)	StartDialogParams (in schrodinger.ui.appframework)
set_parent() (in Sea)	setupJobs() (in DockingStage)	StartDialogParams (in schrodinger.ui.qt.appframework)
set_pick_category() (in schrodinger.maestro.maestro)	setupJobs() (in GridgenStage)	startErrorQueuing() (in FormatReader)
set_pick_id() (in schrodinger.maestro.maestro)	setupJobs() (in LigPrepStage)	startJob() (in _App)
set_pmode() (in Sea)	setupJobs() (in ConfSearchStage)	startLoading() (in LoadingIcon)
set_polyhedron_style() (in schrodinger.maestro.maestro)	setupJobs() (in SampleRingsStage)	startPressed() (in StartDialog)
set_prev_values() (in SaveFileDialog)	setupJobs() (in MMGBSAStage)	startReadyStages() (in Pipeline)
set_project_command() (in schrodinger.maestro.maestro)	setupJobs() (in PrimeStage)	STARTSWITH (in schrodinger.application.bioluminate.propfilter)
set_prompt_mode_for_next_export() (in schrodinger.maestro.maestro)	setupJobs() (in QikPropStage)	Startup (in schrodinger.application.desmond.multisimstartup)
set_radius() (in schrodinger.maestro.maestro)	setupJobs() (in QSiteStage)	State
set_readonly() (in Entry)	setupJobs() (in SemiEmpStage)	State
set_readonly() (in EntryGroup)	setupMbaeOptions() (in _MacroModel)	state (in BaseJob)
set_restr() (in _AtomGroup)	setupMinimizationOptions() (in _MacroModel)	state() (in _DispOpt)
set_restr() (in schrodinger.application.desmond.mdkey)	setupMintaOptions() (in _MacroModel)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
set_restr2() (in schrodinger.application.desmond.mdkey)	setupOptions() (in ParserMain)	STATIC (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
set_restr_block() (in _AtomGroup)	setupOptions() (in WalkerMain)	static() (in mexpParser)
set_restr_block() (in schrodinger.application.desmond.mdkey)	setupOptions() (in _Main)	static_return (in mexpParser)
set_restrain() (in Cms)	setupProjectTable() (in JobInputParams)	StatisticalSummary (in schrodinger.analysis.enrichment)
set_restrain() (in SystemBuilder)	setupProjectTable() (in JobInputParams)	Status (in Job)
set_struct_file() (in JobOutput)	setupQSiteJob() (in QSiteStage)	status() (in App)
set_symbol_size() (in Rama)	setupRCEOptions() (in _MacroModel)	STATUS_COMPLETE (in schrodinger.pipeline.stages.semiemp)
set_text() (in TextButton)	setupUi() (in Ui_Form)	STATUS_NOT_STARTED (in schrodinger.pipeline.stages.semiemp)
set_tol() (in EnsembleSelection)	setupUi() (in Ui_Form)	STATUS_PREPARING_INPUTS (in schrodinger.pipeline.stages.semiemp)
set_user_states() (in ProtAssign)	setupUi() (in Ui_Dialog)	STATUS_PROCESSING_FILES (in schrodinger.pipeline.stages.semiemp)
set_val() (in Test)	setupUi() (in Ui_Form)	STATUS_RUNNING_JOBS (in schrodinger.pipeline.stages.semiemp)
set_value() (in Map)	setupUi() (in Ui_Dialog)	STATUS_SETTING_UP (in schrodinger.pipeline.stages.semiemp)
set_viewport() (in Rama)	setupUi() (in Ui_Form)	statusOk() (in MopacResults)
set_wait_cursor() (in schrodinger.application.bioluminate.pml_menus)	setupViewer() (in SimplifiedSequenceViewer)	std (in StatisticalSummary)
set_workspace_bounding_box() (in schrodinger.maestro.maestro)	setupViewport() (in sketcherView)	STDOUT (in schrodinger.utils.subproc)
setActions() (in Factory)	setupWorkspace() (in JobInputParams)	STDOUT (in schrodinger.utils.subprocess)
setActive() (in IntervalTreeNode)	setupWorkspace() (in JobInputParams)	step_config() (in Guide)
setAllColumnsEditable() (in EditableModel)	setUsedHosts() (in StageJob)	step_config() (in Guide)
setAlpha() (in CanvasFingerprintSimilarity)	setValidator() (in EntryField)	step_configure() (in Guide)
setAsl() (in AtomGroupRow)	setvalue() (in TableSpinbox)	step_configure() (in Guide)
setAsl() (in PosResRow)	setValue() (in JaguarInput)	step_hide() (in Guide)
setAtomBondTyping() (in CanvasFingerprintGenerator)	setValues() (in JaguarInput)	step_hide() (in Guide)
setb() (in MaestroArrow)	setVariables() (in liaison)	step_show() (in Guide)
setBacktrackingLevel() (in BaseRecognizer)	setVdwScalingFactor() (in SystemBuilderInput)	step_size (in Scan)
setBaroMethod() (in EnsembleTab)	setViewByMode() (in DrawSolventPanel)	stepdown_conv (in schrodinger.infra.propedit)
setBaroStyle() (in EnsembleTab)	setViewportMargins() (in sketcherView)	steps (in Scan)
setBeta() (in CanvasFingerprintSimilarity)	setVisibleColumns() (in EditableProxyModel)	stereo (in schrodinger.application.lid.lid2d.render)
setBindingSiteAtoms() (in BindingSiteAligner)	setWaitCursor() (in AppFramework)	STEREO_2D (in schrodinger.application.report2d)
setBondOrder() (in AssignBondOrders)	setWatermapParameters() (in Complex)	STEREO_3D (in schrodinger.application.report2d)
setBoundaryCondition() (in SystemBuilderInput)	setWaterMapResidueColor() (in sketcher)	STEREO_AUTO (in schrodinger.application.report2d)
setButtonEnabled() (in AppFramework)	setWaterMapResidueOverlapping() (in sketcher)	STEREO_FROM_3D (in schrodinger.structure)
setButtonState() (in AppFramework)	setWaterMapResidueSelected() (in sketcher)	STEREO_FROM_ANNOTATION (in schrodinger.structure)
setButtonState() (in AppFramework)	setWriteG96File() (in SystemBuilderInput)	STEREO_FROM_ANNOTATION_AND_GEOM (in schrodinger.structure)
setButtonState() (in Dialog)	setWriteMaeffFile() (in SystemBuilderInput)	STEREO_FROM_GEOMETRY (in schrodinger.structure)
setCellCallback() (in WidgetTable)	setWriteMaeFile() (in SystemBuilderInput)	stereo_options (in schrodinger.structure)
setCellClickCallback() (in WidgetTable)	setWriteOneMaeFile() (in SystemBuilderInput)	steric_clash_data_set (in Report)
setCellResizeCallback() (in WidgetTable)	setWritePdbFile() (in SystemBuilderInput)	stoichiometry() (in schrodinger.application.jaguar.output)
setChanged() (in ReportFrame)	setWriteTopFile() (in SystemBuilderInput)	Stop
setChanged() (in MultiReportWithChart)	setWriteXyzFile() (in SystemBuilderInput)	stop() (in PickAtomToggle)
setChannel() (in ClassicToken)	setxhead() (in MaestroArrow)	stop() (in PickBondToggle)
setChannel() (in CommonToken)	setxtail() (in MaestroArrow)	stop() (in _PickToggle)
setChannel() (in Token)	setXY() (in SliderPlot)	stop() (in PickToggle)
setCharPositionInLine() (in ANTLRStringStream)	setXyz() (in _SdDetailFrame)	stop() (in IncrementalTimer)
setCharPositionInLine() (in CharStream)	setXYZ() (in Structure)	stop_picking() (in schrodinger.maestro.maestro)
setCharPositionInLine() (in ClassicToken)	setyhead() (in MaestroArrow)	stop_rocking() (in schrodinger.application.bioluminate.pml_menus)
setCharPositionInLine() (in CommonToken)	setytail() (in MaestroArrow)	stopErrorQueuing() (in FormatReader)
setCharPositionInLine() (in Token)	setzhead() (in MaestroArrow)	stopLoading() (in LoadingIcon)
setCharStream() (in Lexer)	setztail() (in MaestroArrow)	stopping_optimization() (in schrodinger.application.jaguar.output)
setChild() (in DebugTreeAdaptor)	sgn() (in schrodinger.application.lid.lid2d.utils)	StopRequest (in schrodinger.application.desmond.cmj)
setChild() (in BaseTree)	Shadow	str() (in _KeywordProcessor)
setChild() (in BaseTreeAdaptor)	Shape	STRAND (in SecondaryStructure)
setChild() (in Tree)	SHARED (in schrodinger.infra.mm)	STRANDED (in JobStatus)
setChild() (in TreeAdaptor)	SHARED (in schrodinger.utils.preferences)	streams (in schrodinger.application.desmond.antlr3)
setChildIndex() (in DebugTreeAdaptor)	shared_lic (in schrodinger.application.canvas.utils)	stretch (in schrodinger.application.desmond.fepana)
setChildIndex() (in BaseTree)	shell() (in schrodinger.job.remote_command)	stretchfbhw() (in _FFIO)
setChildIndex() (in CommonTree)	shell_exec (in schrodinger.job.remote_command)	STRICT (in schrodinger.infra.ark)
setChildIndex() (in CommonTreeAdaptor)	SHIFT_DIVIDEBYZERO (in schrodinger.protein.assignment)	STRICT (in schrodinger.utils.cmdline)
setChildIndex() (in Tree)	SHIFT_INVALID (in schrodinger.protein.assignment)	STRICT_END (in schrodinger.application.macromodel.paraUtils)
setChildIndex() (in TreeAdaptor)	SHIFT_OVERFLOW (in schrodinger.protein.assignment)	STRIKE_MAIN (in schrodinger.infra.licensing)
setColormap() (in DistanceMatrixPlotDialog)	SHIFT_UNDERFLOW (in schrodinger.protein.assignment)	STRING (in JobStatus)
setColorModeAction() (in SimplifiedSequenceViewer)	short() (in schrodinger.job.timestamp)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
setColorRGB() (in _StructureAtom)	SHORT_FINGERPRINT_TYPES (in CanvasFingerprintGenerator)	STRING (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
setColorRGBString() (in _StructureAtom)	short_residue_codes_changed() (in App)	String (in schrodinger.application.desmond.enhsamp)
setColors() (in MaestroSphere)	short_residue_labels (in schrodinger.application.lid.lid2d.draw)	STRING (in DesmondTyper)
setColumnCallback() (in WidgetTable)	SHORT_USAGE (in Help)	STRING (in McproTyper)
setColumnNeverShow() (in EditableModel)	shortestPath() (in Perturbations)	STRING (in WatermapTyper)
setColumnReadOnly() (in EditableModel)	shortname (in Project)	STRING (in schrodinger.utils.preferences)
setColumns() (in TableModel)	should_retry() (in RetryTimer)	STRING_OPS (in schrodinger.application.bioluminate.propfilter)
setCommentForKey() (in Preferences)	shouldProcessFrame() (in AnalysisTool)	StringDatabaseCriterion (in schrodinger.application.bioluminate.propfilter)
setComplex() (in sketcher)	shouldRelax() (in RelaxFrame)	stringsValidate() (in schrodinger.application.mcpro.solvent)
setCompStr() (in Criterion)	show() (in ClusterStatisticsPlotDialog)	StringVar (in schrodinger.ui.widget.tkinterwidget)
SetCoordinateAnnotator (in schrodinger.application.lid.lid2d.annotators)	show() (in DendrogramPlotDialog)	struc (in schrodinger.application.desmond.ffiostructure)
setCoords() (in MaestroSphere)	show() (in DistanceMatrixPlotDialog)	struc (in schrodinger.application.desmond)
setCpus() (in _SdJobFrame)	show() (in Entry)	StrucListModel (in schrodinger.application.desmond.fep_gui)
setCpus() (in _SdSubjobFrame)	show() (in EntryGroup)	struct_file() (in JobOutput)
setData() (in DataModel)	show() (in CtObj)	structalign (in schrodinger.structutils)
setData() (in DataModelWithChart)	show() (in _DispOpt)	StructAlign (in schrodinger.structutils.structalign)
setData() (in ResiduesModel)	show() (in Group)	StructuralInteractionFingerprintGenerator (in schrodinger.structutils.interactionfp)
setData() (in StrucListModel)	show() (in Primitive)	Structure (in FepAnalysis)
setData() (in AtomGroupModel)	show() (in AppFramework)	structure (in MopacResults)
setData() (in PosResModel)	show() (in _Cell)	structure (in ProjectRow)
setData() (in TableModel)	show_all() (in _DispOpt)	structure (in schrodinger)
setData() (in Grid)	show_docking_panels_window() (in schrodinger.maestro.maestro)	Structure (in schrodinger.structure)
setData() (in PhaseDB)	show_entry() (in Workspace)	STRUCTURE_FILTERS (in SequenceFileDialog)
setData() (in Structures)	show_n() (in _DispOpt)	structure_sequences (in SimplifiedSequenceViewer)
setData() (in Text)	show_object() (in schrodinger.maestro.maestro)	StructureFileSorter (in schrodinger.structutils.sort)
setDebug() (in Table)	show_only() (in Entry)	StructureReader (in schrodinger.structure)
setDebug() (in Project)	show_only() (in EntryGroup)	STRUCTURES (in schrodinger.application.vsw.vswinput)
setDebugListener() (in DebugParser)	show_only() (in CtObj)	STRUCTURES (in schrodinger.pipeline.pipeio)
setDebugListener() (in DebugTokenStream)	show_only_entry() (in Workspace)	Structures (in schrodinger.pipeline.pipeio)
setDebugListener() (in DebugTreeAdaptor)	show_result() (in schrodinger.application.bioluminate.pml_menus)	structures_have_hydrogens() (in schrodinger.application.lid.ligand_interaction_diagram_gui)
setdefault() (in PairDict)	showAtoms() (in ShowNonBonded)	StructureWriter (in schrodinger.structure)
setDefaultDB() (in DBManagePanel)	showAuxProperties() (in PropertySelector)	structutils (in schrodinger)
setDefaults() (in PropFilterDialog)	ShowBAndS (in schrodinger.application.bioluminate.pml_menus)	style (in _StructureAtom)
setDefaults() (in DrawDdgPanel)	ShowCartoon (in schrodinger.application.bioluminate.pml_menus)	style (in _StructureBond)
setDefaults() (in DrawFepPanel)	showDendrogramPlot() (in CanvasFingerprintClusterGUI)	style (in schrodinger.ui.qt)
setDefaults() (in DrawLrmPanel)	showDistanceMatrixPlot() (in CanvasFingerprintClusterGUI)	STYLE_NAMEMAP (in EnsembleTab)
setDefaults() (in DrawMcPanel)	showEvent() (in AppFramework)	StyleMask
setDefaults() (in DrawMiniPanel)	showEvent() (in sketcher)	SUBHOST (in schrodinger.utils.cmdline)
setDefaults() (in DrawSolventPanel)	showEvent() (in sketcherGUIMultiColumnToolBar)	SUBMIT_DELAY (in schrodinger.job.queue)
setDefaults() (in WriteInputs)	showEvent() (in sketcherView)	subproc (in schrodinger.utils)
setDefaults() (in AddDefinitionDialog)	showFamily() (in PropertySelector)	subprocess (in schrodinger.utils)
setDefaults() (in LigfilterFrame)	showHBondsCB_changed() (in App)	SubprocessJob (in schrodinger.job.queue)
setDirective() (in JaguarInput)	showHelp() (in _App)	SubSetStage (in schrodinger.pipeline.stages.filtering)
setDistanceMatrixCallback() (in CanvasFingerprintClusterGUI)	showinfo (in schrodinger.ui.widget.pmwwidget)	SubstCoreDatabase (in schrodinger.application.combiglide.corehop)
setEditorData() (in ResiduesDelegate)	ShowLabel (in schrodinger.application.bioluminate.pml_menus)	substring() (in ANTLRStringStream)
setEditorData() (in AtomGroupDelegate)	showLigandCB_changed() (in App)	substring() (in CharStream)
setEditorData() (in PosResDelegate)	ShowLigandLines (in schrodinger.application.bioluminate.pml_menus)	SubstructureContextSubMenu (in schrodinger.application.bioluminate.pml_menus)
setEditorData() (in TempItemDelegate)	ShowLigandSpheres (in schrodinger.application.bioluminate.pml_menus)	subtract (in schrodinger.protein.assignment)
setEnabledExceptSimulationTime() (in MdGroup)	ShowLigandTubes (in schrodinger.application.bioluminate.pml_menus)	subtract_host_lists() (in schrodinger.pipeline.pipeline)
setEnabledExceptSimulationTime() (in SimOptionsFrame)	ShowLines (in schrodinger.application.bioluminate.pml_menus)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
setError() (in CustomProgressBar)	ShowMenu (in schrodinger.application.bioluminate.pml_menus)	SUBTROP (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
setExcludeLocation() (in SystemBuilderInput)	ShowMesh (in schrodinger.application.bioluminate.pml_menus)	succeeded() (in Job)
setFilter() (in FingerprintFromFileGenerator)	showMessage() (in ResultsWindow)	SUCCESS (in JobStatus)
setFilteredColumns() (in EditableProxyModel)	showMessage() (in sketcher)	SumFormalCharge (in schrodinger.application.bioluminate.pml_menus)
setFixed() (in SbcUtil)	showMetalsCB_changed() (in App)	summarize() (in FilterReporter)
setFloatable() (in SequenceDockWidget)	showNewStructure() (in ProteinStructureQualityViewer)	summary() (in _Attribute)
setFloatableMovable() (in SequenceDockWidget)	ShowNonBonded (in schrodinger.application.bioluminate.pml_menus)	summary() (in Job)
setFloatableMovableClosable() (in SequenceDockWidget)	ShowNonBondedSpheres (in schrodinger.application.bioluminate.pml_menus)	SumPartialCharge (in schrodinger.application.bioluminate.pml_menus)
setFocusCallback() (in _App)	ShowOrganicMenu (in schrodinger.application.bioluminate.pml_menus)	SUPER (in MopacCalculation)
setFragTableEnabled() (in _LigMut)	showPICatCB_changed() (in App)	superimpose() (in schrodinger.structutils.rmsd)
setFragTableEnabled() (in _RingMut)	showPIPICB_changed() (in App)	superimpose() (in schrodinger.trajectory.analysis)
setFrozen() (in SbcUtil)	showPopup() (in MultiSelectComboBox)	SUPERIMPOSED_PROPERTY (in SiteMatchLookup)
setg() (in MaestroArrow)	showProperties() (in PropertySelector)	Superimposer (in schrodinger.trajectory.analysis)
setglobalprecision() (in schrodinger.application.desmond.destro)	showProteinWithinButton_clicked() (in App)	SUPPORTED_BUILD_RESIDUES (in Mutator)
setGuiState() (in SimOptionsFrame)	ShowRibbon (in schrodinger.application.bioluminate.pml_menus)	SUPPORTED_TEST (in schrodinger.application.desmond.simulation_block_test)
setGuiState() (in _BaseAdvancedDialog)	showSolventExposureCB_changed() (in App)	SUPPORTED_TESTNAME (in schrodinger.application.desmond.simulation_block_test)
setHbondParameters() (in StructuralInteractionFingerprintGenerator)	ShowSpheres (in schrodinger.application.bioluminate.pml_menus)	SURFACE_AREA_CUTOFF (in schrodinger.application.bioluminate.pml_menus)
setHost() (in Host)	showStatisticsPlot() (in CanvasFingerprintClusterGUI)	SurfaceAreaSubMenu (in schrodinger.application.bioluminate.pml_menus)
setHostList() (in JobDJ)	ShowSubstructureMenu (in schrodinger.application.bioluminate.pml_menus)	SurfaceRender (in schrodinger.application.bioluminate.pml_menus)
setHydrationSitesColors() (in App)	ShowSurface (in schrodinger.application.bioluminate.pml_menus)	surfaces (in ProjectRow)
setIncludeAcceptor() (in StructuralInteractionFingerprintGenerator)	showTableHelp() (in ActiveDatabaseDialog)	sval (in Atom)
setIncludeAromatic() (in StructuralInteractionFingerprintGenerator)	ShowTubes (in schrodinger.application.bioluminate.pml_menus)	sval (in Sea)
setIncludeBackbone() (in StructuralInteractionFingerprintGenerator)	showtype() (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)	swap_atoms() (in changeable)
setIncludeCharged() (in StructuralInteractionFingerprintGenerator)	showtype() (in schrodinger.application.desmond.enhsamp)	SYMBOL_SCALING_FACTOR (in Rama)
setIncludeContact() (in StructuralInteractionFingerprintGenerator)	showwarning (in schrodinger.ui.widget.pmwwidget)	symlink() (in schrodinger.application.desmond.util)
setIncludedHydrationSites() (in App)	showWatersCB_changed() (in App)	symlink_input() (in McproStageBase)
setIncludeDonor() (in StructuralInteractionFingerprintGenerator)	SIDECHAIN (in schrodinger.application.bioluminate.pml_menus)	symmetrized_geometry() (in schrodinger.application.jaguar.output)
setIncludeHydrophobic() (in StructuralInteractionFingerprintGenerator)	sidechain_dihedral_atomnames (in schrodinger.protein.analysis)	sync() (in Preferences)
setIncludePolar() (in StructuralInteractionFingerprintGenerator)	sidechain_dihedral_data_set (in Report)	syncdb() (in _Backend)
setIncludeSidechain() (in StructuralInteractionFingerprintGenerator)	sidechain_dihedrals (in schrodinger.protein.analysis)	syncworkspace_clicked() (in App)
setInfo() (in StartDialog1)	SIDECHAIN_INTERACTION (in StructuralInteractionFingerprintGenerator)	Syntax (in schrodinger.application.desmond.enhanced_sampling.FcnTypes)
setInfo() (in StartDialog2)	sidechain_planarity_data_set (in Report)	sys_fname (in schrodinger.application.desmond.predict_remd_temp)
setInput() (in BaseRecognizer)	SIDECHAIN_POS (in StructuralInteractionFingerprintGenerator)	syslog (in schrodinger.job.queue)
setInput() (in Stage)	sig_n (in JaguarResults)	system (in schrodinger.utils)
setInputStream() (in ClassicToken)	sig_neg_alea_prop (in MopacResults)	system_builder_inp (in schrodinger.application.desmond)
setInputStream() (in CommonToken)	sig_neg_alie_prop (in MopacResults)	system_builder_util (in schrodinger.application.desmond)
setInputStream() (in Token)	sig_neg_esp_prop (in MopacResults)	SystemBuilder
setInteractionCutoff() (in StructuralInteractionFingerprintGenerator)	sig_p (in JaguarResults)	SystemBuilderInput (in schrodinger.application.desmond.system_builder_inp)
setInvertFilter() (in FingerprintFromFileGenerator)	sig_pos_alea_prop (in MopacResults)	systype (in schrodinger.application.desmond)
setIonLocation() (in SystemBuilderInput)	sig_pos_alie_prop (in MopacResults)	SysType (in schrodinger.application.desmond.systype)