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Suite 2012 Schrodinger Python API
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Identifier Index
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T
t1
(in
_FFIORestraint
)
text
(in
CommonToken
)
toString()
(in
TokenRewriteStream
)
t1
(in
_FFRestraint
)
text
(in
CommonTree
)
toString()
(in
TokenStream
)
t2
(in
_FFIORestraint
)
TEXT
(in
schrodinger.pipeline.pipeio
)
toString()
(in
ClassicToken
)
t2
(in
_FFRestraint
)
Text
(in
schrodinger.pipeline.pipeio
)
toString()
(in
BaseTree
)
t3
(in
_FFIORestraint
)
Text
(in
schrodinger.ui.widget.tkinterwidget
)
toString()
(in
CommonErrorNode
)
t3
(in
_FFRestraint
)
text()
(in
EntryField
)
toString()
(in
CommonTree
)
T_0
(in
schrodinger.application.desmond.simulation_block_test
)
text()
(in
FileEntry
)
toString()
(in
CommonTreeNodeStream
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
text()
(in
_EntryField
)
toString()
(in
Tree
)
T__45
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
text_c
(in
schrodinger.application.lid.lid2d.draw
)
toString()
(in
TreeNodeStream
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
text_c_blackbackground
(in
schrodinger.application.lid.lid2d.draw
)
toString()
(in
TreePattern
)
T__46
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
text_c_cofactor
(in
schrodinger.application.lid.lid2d.draw
)
toString()
(in
GenOptions
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
text_c_cofactor_blackbackground
(in
schrodinger.application.lid.lid2d.draw
)
toString()
(in
ScfIteration
)
T__47
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
TEXTBOX_FONT
(in
schrodinger.application.bioluminate.propfilter
)
toString()
(in
schrodinger.infra.ark
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
TEXTBOX_FONT
(in
schrodinger.ui.ligfilter
)
toStrings()
(in
BaseRecognizer
)
T__48
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
TextButton
(in
schrodinger.application.desmond.table
)
toStringTree()
(in
BaseTree
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
TextParser
(in
schrodinger.application.jaguar.output
)
toStringTree()
(in
CommonTree
)
T__49
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
textparser_debug
(in
schrodinger.application.jaguar.output
)
toStringTree()
(in
Tree
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
textparser_trace()
(in
schrodinger.application.jaguar.output
)
total_added
(in
JobDJ
)
T__50
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
TextualStructure
(in
schrodinger.structure
)
total_atoms()
(in
schrodinger.application.qsite.output
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
theory
(in
Cut
)
Total_charge()
(in
schrodinger.utils.ligfilter
)
T__51
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theory
(in
HydrogenCap
)
total_energy()
(in
schrodinger.application.qsite.output
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermo_helper()
(in
schrodinger.application.jaguar.output
)
total_frame
(in
DesmondSimulation
)
T__52
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoCollection
(in
schrodinger.application.jaguar.output
)
total_kinetic_energy()
(in
schrodinger.application.qsite.output
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
thermoMethodChanged()
(in
EnsembleTab
)
total_mass
(in
CmsStructure
)
T__53
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThermoProp
(in
schrodinger.application.jaguar.output
)
total_mass
(in
DesmondSimulation
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THERMOSTAT_MAP
(in
GuiMap
)
total_mass
(in
_DesmondFrame
)
T__54
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
theta0
(in
_FFIOAngleFBHW
)
total_mass
(in
FFStructure
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
THIN_TRACE
(in
schrodinger.application.bioluminate.pml_menus
)
total_mutations
(in
Mutator
)
T__55
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
third_quartile
(in
StatisticalSummary
)
total_potential_energy()
(in
schrodinger.application.qsite.output
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
ThreadedJob
(in
schrodinger.job.queue
)
total_pseudo
(in
FFStructure
)
T__56
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ThreadingModel
(in
schrodinger.trajectory.rmsd2d
)
total_weight
(in
Structure
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
ThreadSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
toTree()
(in
RewriteRuleElementStream
)
T__57
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ti
(in
_FEPIOAngleMap
)
toTree()
(in
RewriteRuleNodeStream
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
ti
(in
_FEPIOBondMap
)
toTree()
(in
RewriteRuleTokenStream
)
T__58
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
ti
(in
_FEPIODihedMap
)
TraceDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
table
(in
schrodinger.application.desmond.fepana
)
ti
(in
_FEPIOExclMap
)
traceIn()
(in
BaseRecognizer
)
table
(in
schrodinger.application.desmond
)
ti
(in
_FEPIOPairMap
)
traceIn()
(in
Lexer
)
Table
(in
schrodinger.application.desmond.table
)
Time
(in
Job
)
traceIn()
(in
Parser
)
table
(in
schrodinger.infra
)
time
(in
_DesmondFrame
)
traceIn()
(in
TreeParser
)
Table
(in
schrodinger.infra.table
)
time()
(in
_FepFrame
)
traceOut()
(in
BaseRecognizer
)
table_file_ext
(in
Calculator
)
time_duration()
(in
schrodinger.application.desmond.util
)
traceOut()
(in
Lexer
)
table_sep
(in
Calculator
)
timedNeedsUpdateFromProjectTableForcedSlot()
(in
sketcher
)
traceOut()
(in
Parser
)
TableButton
(in
schrodinger.application.desmond.table
)
timedNeedsUpdateFromProjectTableSlot()
(in
sketcher
)
traceOut()
(in
TreeParser
)
TableCheckbutton
(in
schrodinger.application.desmond.table
)
timerEvent()
(in
AppFramework
)
trackJobProgress()
(in
AppFramework
)
TableComboBox
(in
schrodinger.application.desmond.table
)
timerEvent()
(in
sketcher
)
TRAJ_CMD
(in
Trajectory
)
TableEntry
(in
schrodinger.application.desmond.table
)
timerEvent()
(in
sketcherGUIMultiColumnToolBar
)
traj_fname
(in
schrodinger.application.desmond.ana
)
TableEntry
(in
schrodinger.ui.widget.tkinterwidget
)
timerEvent()
(in
sketcherView
)
traj_fname
(in
schrodinger.application.desmond.fepana
)
TableEntryField
(in
schrodinger.application.desmond.table
)
timers
(in
schrodinger.utils
)
Trajectory
TableLabel
(in
schrodinger.application.desmond.table
)
TimeSeriesAnalysisJob
trajectory
(in
schrodinger
)
TableModel
(in
schrodinger.application.desmond.gui
)
timestamp
(in
schrodinger.job
)
TRANS
(in
schrodinger.application.glide.glide
)
TableRadiobutton
(in
schrodinger.application.desmond.table
)
timestamp_format
(in
schrodinger.job.jobcontrol
)
transform
(in
schrodinger.structutils
)
TableRow
(in
schrodinger.infra.table
)
timezone_adjustment
(in
schrodinger.job.timestamp
)
transform_atom_coordinates()
(in
schrodinger.structutils.transform
)
TableSpinbox
(in
schrodinger.application.desmond.table
)
TINY_RESIDUES
(in
schrodinger.structutils
)
transform_structure()
(in
schrodinger.application.ska
)
tabletEvent()
(in
sketcher
)
title
(in
schrodinger.application.desmond.gchart
)
transform_structure()
(in
schrodinger.structutils.transform
)
tabletEvent()
(in
sketcherGUIMultiColumnToolBar
)
title
(in
Hypothesis
)
transform_watermap()
(in
WaterMapAnaJob
)
tabletEvent()
(in
sketcherView
)
title
(in
EntryGroup
)
transformPoint()
(in
schrodinger.application.lid.lid2d.utils
)
TableTextButton
(in
schrodinger.application.desmond.table
)
title
(in
ProjectRow
)
transformWaterMapTrajectory()
(in
WaterMapAnaJob
)
TableTitle
(in
schrodinger.application.desmond.table
)
title
(in
SmilesStructure
)
transition_metals
(in
schrodinger.application.prime.primefix
)
tableViewClicked()
(in
ChooseLigandDialog
)
title
(in
Structure
)
transition_metals
(in
schrodinger.structutils.assignbondorders
)
tableViewClicked()
(in
ChooseLigandDialog
)
title_rank_re
(in
Calculator
)
translate_centroid_to_origin()
(in
schrodinger.structutils.transform
)
tabSelected()
(in
ProteinStructureQualityViewer
)
tj
(in
_FEPIOAngleMap
)
translate_structure()
(in
schrodinger.structutils.transform
)
tag()
(in
Sea
)
tj
(in
_FEPIOBondMap
)
translateCentroidToOrigin()
(in
DesmondBoxSize
)
tag_md()
(in
schrodinger.application.desmond.config
)
tj
(in
_FEPIODihedMap
)
transmit()
(in
DebugEventSocketProxy
)
tag_meta()
(in
schrodinger.application.desmond.config
)
tj
(in
_FEPIOExclMap
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.arrow
)
tag_minimize()
(in
schrodinger.application.desmond.config
)
tj
(in
_FEPIOPairMap
)
TRANSPARENCY_DEFAULT
(in
schrodinger.graphics3d.sphere
)
tag_remd()
(in
schrodinger.application.desmond.config
)
Tk
(in
schrodinger.ui.widget.tkinterwidget
)
TRANSPARENCY_MAX
(in
schrodinger.graphics3d.common
)
tag_vrun()
(in
schrodinger.application.desmond.config
)
tk_toplevel_add()
(in
schrodinger.maestro.maestro
)
TRANSPARENCY_MIN
(in
schrodinger.graphics3d.common
)
tan
(in
schrodinger.protein.assignment
)
tk_toplevel_remove()
(in
schrodinger.maestro.maestro
)
transparent_c
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
tanh
(in
schrodinger.protein.assignment
)
tkinterwidget
(in
schrodinger.ui.widget
)
treatSolventFromSolute()
(in
SystemBuilderInput
)
taperingModified()
(in
InteractionTab
)
TMPDIR
(in
schrodinger.utils.cmdline
)
tree
(in
schrodinger.application.desmond.antlr3
)
Task
to_style
(in
_StructureBond
)
Tree
(in
schrodinger.application.desmond.antlr3.tree
)
TechnicalPreset
(in
schrodinger.application.bioluminate.pml_menus
)
toDebugString()
(in
TokenRewriteStream
)
TreeAdaptor
(in
schrodinger.application.desmond.antlr3.tree
)
temp
(in
schrodinger.application.desmond.predict_remd_temp
)
toDOT()
(in
DOTTreeGenerator
)
treeContextCallback()
(in
SimplifiedSequenceViewer
)
TEMP
(in
schrodinger.utils.fileutils
)
toDOT()
(in
schrodinger.application.desmond.antlr3.dottreegen
)
TreeNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
tempdir
(in
schrodinger.application.desmond.mplchart
)
toDOT()
(in
schrodinger.application.desmond.antlr3.extras
)
TreeParser
(in
schrodinger.application.desmond.antlr3.tree
)
Temperature
(in
schrodinger.application.desmond.simulation_block_test
)
toDOTDefineEdges()
(in
DOTTreeGenerator
)
TreePattern
(in
schrodinger.application.desmond.antlr3.treewizard
)
temperature_factor
(in
_Chain
)
toDOTDefineNodes()
(in
DOTTreeGenerator
)
TreePatternLexer
(in
schrodinger.application.desmond.antlr3.treewizard
)
temperature_factor
(in
_Residue
)
tofront()
(in
Tk
)
TreePatternParser
(in
schrodinger.application.desmond.antlr3.treewizard
)
temperature_factor
(in
_StructureAtom
)
toggle()
(in
_ChopCap
)
TreePatternTreeAdaptor
(in
schrodinger.application.desmond.antlr3.treewizard
)
TempItemDelegate
(in
schrodinger.application.desmond.gui
)
toggle()
(in
_Import
)
TreeRuleReturnScope
(in
schrodinger.application.desmond.antlr3.tree
)
TemplateFileDialog
(in
schrodinger.application.bioluminate.bwidgets
)
toggle()
(in
_Neut
)
TreeVisitor
(in
schrodinger.application.desmond.antlr3.tree
)
templates
(in
schrodinger.structutils.interactions
)
toggle_table
(in
schrodinger.application.bioluminate.pml_menus
)
treewizard
(in
schrodinger.application.desmond.antlr3
)
TEMPORARY_LICENSE_FAILURE
(in
JobStatus
)
toggleAllColumns()
(in
DBManagePanel
)
TreeWizard
(in
schrodinger.application.desmond.antlr3.treewizard
)
terminate()
(in
DebugEventListener
)
toggleAllowed()
(in
ProteinStructureQualityViewer
)
TRIGGERED
(in
schrodinger.application.bioluminate.pml_menus
)
terminate()
(in
DebugEventSocketProxy
)
toggleCounterions()
(in
ConsensusToolBar
)
Trim
terminate()
(in
MmJag
)
toggleDisallowed()
(in
ProteinStructureQualityViewer
)
trim_pathname()
(in
schrodinger.antibody_db_manage_gui
)
terminate()
(in
Bitset
)
toggleFavorable()
(in
ProteinStructureQualityViewer
)
trim_redundant_combinations()
(in
hbond_cluster
)
terminate()
(in
Initializer
)
toggleLigands()
(in
ConsensusToolBar
)
trj_dir
(in
schrodinger.application.desmond.fepana
)
terminate()
(in
mmlist
)
toggleRelaxModel()
(in
RelaxFrame
)
TRUE
(in
schrodinger.infra.mm
)
terminate()
(in
Table
)
ToggleState
(in
schrodinger.application.bioluminate.pml_menus
)
true
(in
schrodinger.infra.mm
)
terminate()
(in
Project
)
ToggleStateSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
True_
(in
schrodinger.protein.assignment
)
terminate()
(in
Minimizer
)
ToggleVisibleObjectsState
(in
schrodinger.application.bioluminate.pml_menus
)
true_divide
(in
schrodinger.protein.assignment
)
terminate()
(in
schrodinger.structutils.minimize
)
toggleWaters()
(in
ConsensusToolBar
)
trunc
(in
schrodinger.protein.assignment
)
Test
(in
schrodinger.application.desmond.simulation_block_test
)
Token
(in
schrodinger.application.desmond.antlr3.tokens
)
truncate_solvate_protein()
(in
schrodinger.application.desmond.system_builder_util
)
test()
(in
schrodinger.ui.chooseligand
)
tokenNames
(in
BaseRecognizer
)
truncateProtein()
(in
schrodinger.application.desmond.system_builder_util
)
test()
(in
schrodinger.ui.qt.appframework
)
tokenNames
(in
mexpParser
)
try_import()
(in
schrodinger.utils.moduleproxy
)
test()
(in
schrodinger.utils.sea
)
tokenNames
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
tryCountIncrement()
(in
ProxyPasswordManager
)
test_clear_restrain()
(in
schrodinger.application.desmond.cms
)
TokenRewriteStream
(in
schrodinger.application.desmond.antlr3.streams
)
tryCountReset()
(in
ProxyPasswordManager
)
test_content
(in
schrodinger.application.desmond.simulation_block_test
)
tokens
(in
schrodinger.application.bioluminate.pml_menus
)
ts_component_precision
(in
JaguarResults
)
test_file
(in
schrodinger.application.desmond.simulation_block_test
)
tokens
(in
schrodinger.application.desmond.antlr3
)
TS_NAME
(in
TimeSeriesAnalysisJob
)
test_freeze_atom()
(in
schrodinger.application.desmond.remd
)
TokenSource
(in
schrodinger.application.desmond.antlr3.recognizers
)
TUBE
(in
schrodinger.application.bioluminate.pml_menus
)
test_gen_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
tokenStartIndex
(in
CommonTree
)
TURN
(in
SecondaryStructure
)
test_get_alpha_helix_restraint()
(in
schrodinger.application.desmond.cms
)
tokenStopIndex
(in
CommonTree
)
two_e_terms()
(in
schrodinger.application.jaguar.output
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.cms
)
TokenStream
(in
schrodinger.application.desmond.antlr3.streams
)
TwoDWidget
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
test_get_degrees_of_freedom()
(in
schrodinger.application.desmond.remd
)
toolBar
(in
sketcher
)
TwoGroupFingerprintAnalyzer
(in
schrodinger.analysis.enrichment
)
test_get_gluepoints()
(in
schrodinger.application.desmond.cms
)
toolbar_feedback_override()
(in
MultiReportWithChart
)
type
(in
CommonTree
)
test_get_num_constraint()
(in
schrodinger.application.desmond.cms
)
toolbars
(in
schrodinger.application.bioluminate.ssv
)
type
(in
_FFIOSite
)
test_get_num_constraint()
(in
schrodinger.application.desmond.remd
)
tools
(in
schrodinger.application.macromodel
)
type
(in
_FFSite
)
test_get_num_nonwateratom()
(in
schrodinger.application.desmond.remd
)
TOOLTIP_TEXT
(in
EnsembleClassFrame
)
type()
(in
Constraint
)
test_get_num_wateratom()
(in
schrodinger.application.desmond.remd
)
toOriginalString()
(in
TokenRewriteStream
)
type()
(in
PhaseDatabaseIconProvider
)
test_get_relative_restraint()
(in
schrodinger.application.desmond.cms
)
TOP_DOCK_AREA
(in
schrodinger.ui.qt.appframework
)
type()
(in
_CustomIconProvider
)
test_list
(in
schrodinger.application.desmond.simulation_block_test
)
TOPIC
(in
Help
)
type_ligand_cations()
(in
schrodinger.structutils.interactions
)
test_predict_temperature()
(in
schrodinger.application.desmond.remd
)
Toplevel
(in
schrodinger.ui.widget.tkinterwidget
)
type_ligand_fully()
(in
schrodinger.structutils.interactions
)
test_predict_with_nreplica_and_exch()
(in
schrodinger.application.desmond.remd
)
TOPO
(in
schrodinger.application.moldescriptors
)
type_receptor_cations()
(in
schrodinger.structutils.interactions
)
test_predict_with_temp_and_nreplica()
(in
schrodinger.application.desmond.remd
)
torcons_section_allowed_keywords
(in
schrodinger.application.glide.glide
)
type_receptor_fully()
(in
schrodinger.structutils.interactions
)
test_reverse_rsh
(in
schrodinger.job.remote_command
)
torsion
(in
schrodinger.application.desmond.fepana
)
type_untyped_residue_cations()
(in
schrodinger.structutils.interactions
)
TestApp
(in
schrodinger.ui.chooseligand
)
torsion_energy()
(in
schrodinger.application.qsite.output
)
type_untyped_residues_fully()
(in
schrodinger.structutils.interactions
)
TestApp
(in
schrodinger.ui.qt.appframework
)
toString()
(in
DebugTokenStream
)
typecodes
(in
schrodinger.protein.assignment
)
testString()
(in
GenOptions
)
toString()
(in
CommonTokenStream
)
typeDict
(in
schrodinger.protein.assignment
)
TestSuite
(in
schrodinger.application.desmond.util
)
toString()
(in
DeleteOp
)
typeNA
(in
schrodinger.protein.assignment
)
Tetrahedron
(in
schrodinger.graphics3d.polyhedron
)
toString()
(in
ReplaceOp
)
typer_cls
(in
TyperBase
)
text
(in
Lexer
)
toString()
(in
RewriteOperation
)
TyperBase
(in
schrodinger.application.desmond.systype
)
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Suite 2012 Schrodinger Python API
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