schrodinger :: application :: desmond :: stage :: Analysis :: Class Analysis
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Class Analysis

         object --+        
                  |        
picklejar.Picklable --+    
                      |    
          cmj.StageBase --+
                          |
                         Analysis

Nested Classes [hide private]

Inherited from cmj.StageBase: __metaclass__

Instance Methods [hide private]
 
PARAM(...)
 
__init__(self, *arg, **kwarg)
x.__init__(...) initializes x; see help(type(x)) for signature
 
_get_prob_profile(self, time_series, prob_profile)
 
_get_title(self, pj)
 
crunch(self)
This is where jobs of this stage are created.
 
hook_captured_successful_job(self, job)

Inherited from cmj.StageBase: __getstate__, __setstate__, capture, check_param, describe, determine, pack_stage, poststage, prestage, push, release

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  NAME = 'analysis'
  DEFAULT_PROB_PROFILE_SETTING = {'angel': [2, 0, 180, True], 'd...

Inherited from cmj.StageBase: count, stage_cls, stage_obj

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

PARAM(...)

 
Overrides: cmj.StageBase.PARAM

__init__(self, *arg, **kwarg)
(Constructor)

 

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__

crunch(self)

 

This is where jobs of this stage are created. This function should be overriden by the subclass.

Overrides: cmj.StageBase.crunch

hook_captured_successful_job(self, job)

 
Overrides: cmj.StageBase.hook_captured_successful_job

Class Variable Details [hide private]

DEFAULT_PROB_PROFILE_SETTING

Value:
{'angel': [2, 0, 180, True], 'dihedral': [2, 0, 360, True]}