Everything

All Classes

PyQt4.QtGui.QAbstractItemDelegate.EndEditHint
PyQt4.QtGui.QAbstractItemView.CursorAction
PyQt4.QtGui.QAbstractItemView.DragDropMode
PyQt4.QtGui.QAbstractItemView.DropIndicatorPosition
PyQt4.QtGui.QAbstractItemView.EditTrigger
PyQt4.QtGui.QAbstractItemView.EditTriggers
PyQt4.QtGui.QAbstractItemView.ScrollHint
PyQt4.QtGui.QAbstractItemView.ScrollMode
PyQt4.QtGui.QAbstractItemView.SelectionBehavior
PyQt4.QtGui.QAbstractItemView.SelectionMode
PyQt4.QtGui.QAbstractItemView.State
PyQt4.QtGui.QAction.ActionEvent
PyQt4.QtGui.QAction.MenuRole
PyQt4.QtGui.QAction.Priority
PyQt4.QtGui.QAction.SoftKeyRole
PyQt4.QtGui.QComboBox.InsertPolicy
PyQt4.QtGui.QComboBox.SizeAdjustPolicy
PyQt4.QtGui.QDialog.DialogCode
PyQt4.QtGui.QDockWidget.DockWidgetFeature
PyQt4.QtGui.QDockWidget.DockWidgetFeatures
PyQt4.QtGui.QFileDialog.AcceptMode
PyQt4.QtGui.QFileDialog.DialogLabel
PyQt4.QtGui.QFileDialog.FileMode
PyQt4.QtGui.QFileDialog.Option
PyQt4.QtGui.QFileDialog.Options
PyQt4.QtGui.QFileDialog.ViewMode
PyQt4.QtGui.QFileIconProvider.IconType
PyQt4.QtGui.QFrame.Shadow
PyQt4.QtGui.QFrame.Shape
PyQt4.QtGui.QFrame.StyleMask
PyQt4.QtGui.QGraphicsView.CacheMode
PyQt4.QtGui.QGraphicsView.CacheModeFlag
PyQt4.QtGui.QGraphicsView.DragMode
PyQt4.QtGui.QGraphicsView.OptimizationFlag
PyQt4.QtGui.QGraphicsView.OptimizationFlags
PyQt4.QtGui.QGraphicsView.ViewportAnchor
PyQt4.QtGui.QGraphicsView.ViewportUpdateMode
PyQt4.QtGui.QLineEdit.EchoMode
PyQt4.QtGui.QListView.Flow
PyQt4.QtGui.QListView.LayoutMode
PyQt4.QtGui.QListView.Movement
PyQt4.QtGui.QListView.ResizeMode
PyQt4.QtGui.QListView.ViewMode
PyQt4.QtGui.QMainWindow.DockOption
PyQt4.QtGui.QMainWindow.DockOptions
PyQt4.QtGui.QMovie.CacheMode
PyQt4.QtGui.QMovie.MovieState
PyQt4.QtGui.QPaintDevice.PaintDeviceMetric
PyQt4.QtGui.QProgressBar.Direction
PyQt4.QtGui.QValidator.State
PyQt4.QtGui.QWidget.RenderFlag
PyQt4.QtGui.QWidget.RenderFlags
abc.ABCMeta
float
int
schrodinger.analysis.enrichment.ActiveDecoyFingerprintAnalyzer
schrodinger.analysis.enrichment.Calculator
schrodinger.analysis.enrichment.FingerprintFromFileGenerator
schrodinger.analysis.enrichment.Plotter
schrodinger.analysis.enrichment.StatisticalSummary
schrodinger.analysis.enrichment.TwoGroupFingerprintAnalyzer
schrodinger.antibody_db_manage_gui.AdvancedOptionsPanel
schrodinger.antibody_db_manage_gui.ColumnSelectDialog
schrodinger.antibody_db_manage_gui.DBManagePanel
schrodinger.antibody_db_manage_gui.Editable
schrodinger.antibody_db_manage_gui.EditableDelegate
schrodinger.antibody_db_manage_gui.EditableModel
schrodinger.antibody_db_manage_gui.EditableProxyModel
schrodinger.antibody_db_manage_gui.OrderedDB
schrodinger.antibody_db_manage_gui.SearchType
schrodinger.application.bioluminate.actions.factory.Factory
schrodinger.application.bioluminate.actions.factory.SAction
schrodinger.application.bioluminate.antibody.management.ActiveDatabaseDialog
schrodinger.application.bioluminate.antibody.management.ActiveDatabaseTable
schrodinger.application.bioluminate.antibody.utils.FrameworkTemplate
schrodinger.application.bioluminate.antibody_utils.FrameworkTemplate
schrodinger.application.bioluminate.bwidgets.ImportWidget
schrodinger.application.bioluminate.bwidgets.LoadingIcon
schrodinger.application.bioluminate.bwidgets.NumericLineEdit
schrodinger.application.bioluminate.bwidgets.QuickHelpButton
schrodinger.application.bioluminate.bwidgets.RowActionItem
schrodinger.application.bioluminate.bwidgets.SequenceFileDialog
schrodinger.application.bioluminate.bwidgets.TemplateFileDialog
schrodinger.application.bioluminate.license.License
schrodinger.application.bioluminate.pml_menus.ActionMenu
schrodinger.application.bioluminate.pml_menus.AddHydrogens
schrodinger.application.bioluminate.pml_menus.AntibodyPreset
schrodinger.application.bioluminate.pml_menus.Around
schrodinger.application.bioluminate.pml_menus.AroundExpandSubMenu
schrodinger.application.bioluminate.pml_menus.AsMenu
schrodinger.application.bioluminate.pml_menus.AtomContextMenu
schrodinger.application.bioluminate.pml_menus.AutoColorCarbons
schrodinger.application.bioluminate.pml_menus.AutoColorObjects
schrodinger.application.bioluminate.pml_menus.AutoColorSubMenu
schrodinger.application.bioluminate.pml_menus.AutoCycleCarbonColor
schrodinger.application.bioluminate.pml_menus.AutoCycleColor
schrodinger.application.bioluminate.pml_menus.BAndSPreset
schrodinger.application.bioluminate.pml_menus.BFactorPreset
schrodinger.application.bioluminate.pml_menus.Center
schrodinger.application.bioluminate.pml_menus.Clean
schrodinger.application.bioluminate.pml_menus.ColorAtomsByBFactor
schrodinger.application.bioluminate.pml_menus.ColorAtomsBySpectrum
schrodinger.application.bioluminate.pml_menus.ColorByElementSubMenu
schrodinger.application.bioluminate.pml_menus.ColorBySubstructure
schrodinger.application.bioluminate.pml_menus.ColorCalphasByBFactor
schrodinger.application.bioluminate.pml_menus.ColorCalphasBySpectrum
schrodinger.application.bioluminate.pml_menus.ColorCarbons
schrodinger.application.bioluminate.pml_menus.ColorCarbonsBySpectrum
schrodinger.application.bioluminate.pml_menus.ColorChainSubMenu
schrodinger.application.bioluminate.pml_menus.ColorChainbows
schrodinger.application.bioluminate.pml_menus.ColorChains
schrodinger.application.bioluminate.pml_menus.ColorChainsByCalpha
schrodinger.application.bioluminate.pml_menus.ColorChainsByCarbon
schrodinger.application.bioluminate.pml_menus.ColorChooserPanel
schrodinger.application.bioluminate.pml_menus.ColorHNOS
schrodinger.application.bioluminate.pml_menus.ColorHydrogens
schrodinger.application.bioluminate.pml_menus.ColorLabel
schrodinger.application.bioluminate.pml_menus.ColorMenu
schrodinger.application.bioluminate.pml_menus.ColorObject
schrodinger.application.bioluminate.pml_menus.ColorRecentCarbons
schrodinger.application.bioluminate.pml_menus.ColorRecentHydrogens
schrodinger.application.bioluminate.pml_menus.ColorRecentObjects
schrodinger.application.bioluminate.pml_menus.ColorRibbonMixin
schrodinger.application.bioluminate.pml_menus.ColorSpectrumSubMenu
schrodinger.application.bioluminate.pml_menus.ColorSubstructureSubMenu
schrodinger.application.bioluminate.pml_menus.CompleteSubMenu
schrodinger.application.bioluminate.pml_menus.ComputeSubMenu
schrodinger.application.bioluminate.pml_menus.ComputeSurfaceArea
schrodinger.application.bioluminate.pml_menus.CountAtoms
schrodinger.application.bioluminate.pml_menus.CreateEntry
schrodinger.application.bioluminate.pml_menus.CustomColor
schrodinger.application.bioluminate.pml_menus.CustomRecentColor
schrodinger.application.bioluminate.pml_menus.DefaultPreset
schrodinger.application.bioluminate.pml_menus.DeleteAll
schrodinger.application.bioluminate.pml_menus.DeleteAtoms
schrodinger.application.bioluminate.pml_menus.DeleteProject
schrodinger.application.bioluminate.pml_menus.DeleteSelections
schrodinger.application.bioluminate.pml_menus.DeleteWS
schrodinger.application.bioluminate.pml_menus.Disable
schrodinger.application.bioluminate.pml_menus.Duplicate
schrodinger.application.bioluminate.pml_menus.EntrySubMenu
schrodinger.application.bioluminate.pml_menus.ExcludeFromSelection
schrodinger.application.bioluminate.pml_menus.ExcludeInorganicFromSelection
schrodinger.application.bioluminate.pml_menus.ExcludeOrganicFromSelection
schrodinger.application.bioluminate.pml_menus.ExcludePolymerFromSelection
schrodinger.application.bioluminate.pml_menus.ExcludeSolventFromSelection
schrodinger.application.bioluminate.pml_menus.ExcludeSubMenu
schrodinger.application.bioluminate.pml_menus.ExcludeVisibleFromSelection
schrodinger.application.bioluminate.pml_menus.Expand
schrodinger.application.bioluminate.pml_menus.Extend
schrodinger.application.bioluminate.pml_menus.ExtendSubMenu
schrodinger.application.bioluminate.pml_menus.FakeMaestro
schrodinger.application.bioluminate.pml_menus.FindPCSubMenu
schrodinger.application.bioluminate.pml_menus.GenSelectionSubMenu
schrodinger.application.bioluminate.pml_menus.GenSymMatesSubMenu
schrodinger.application.bioluminate.pml_menus.GeneralContextSubMenu
schrodinger.application.bioluminate.pml_menus.GenerateInterfaceSelection
schrodinger.application.bioluminate.pml_menus.GenerateLigandSelection
schrodinger.application.bioluminate.pml_menus.GenerateSelection
schrodinger.application.bioluminate.pml_menus.GenerateSubMenu
schrodinger.application.bioluminate.pml_menus.GenerateSurfResSelection
schrodinger.application.bioluminate.pml_menus.GenerateSymmetryMates
schrodinger.application.bioluminate.pml_menus.HideAllOthers
schrodinger.application.bioluminate.pml_menus.HideAtoms
schrodinger.application.bioluminate.pml_menus.HideEverything
schrodinger.application.bioluminate.pml_menus.HideHydrogenSubMenu
schrodinger.application.bioluminate.pml_menus.HideHydrogens
schrodinger.application.bioluminate.pml_menus.HideLabel
schrodinger.application.bioluminate.pml_menus.HideMainChain
schrodinger.application.bioluminate.pml_menus.HideMenu
schrodinger.application.bioluminate.pml_menus.HideNonBonded
schrodinger.application.bioluminate.pml_menus.HidePolarHydrogens
schrodinger.application.bioluminate.pml_menus.HideRibbons
schrodinger.application.bioluminate.pml_menus.HideSideChain
schrodinger.application.bioluminate.pml_menus.HideSurface
schrodinger.application.bioluminate.pml_menus.HideSymmetryMates
schrodinger.application.bioluminate.pml_menus.HideWaters
schrodinger.application.bioluminate.pml_menus.HydrogenSubMenu
schrodinger.application.bioluminate.pml_menus.IncludeInSelection
schrodinger.application.bioluminate.pml_menus.IncludeSubMenu
schrodinger.application.bioluminate.pml_menus.IncludeVisibleInSelection
schrodinger.application.bioluminate.pml_menus.InterfaceMixin
schrodinger.application.bioluminate.pml_menus.InterfacePreset
schrodinger.application.bioluminate.pml_menus.InvertCompleteSelection
schrodinger.application.bioluminate.pml_menus.InvertSubMenu
schrodinger.application.bioluminate.pml_menus.LabelAtom
schrodinger.application.bioluminate.pml_menus.LabelAtomByEntryIndex
schrodinger.application.bioluminate.pml_menus.LabelAtomByMolIndex
schrodinger.application.bioluminate.pml_menus.LabelAtomByNumType
schrodinger.application.bioluminate.pml_menus.LabelAtomByOccupancy
schrodinger.application.bioluminate.pml_menus.LabelAtomByProp
schrodinger.application.bioluminate.pml_menus.LabelAtomByStereo
schrodinger.application.bioluminate.pml_menus.LabelAtomByVDW
schrodinger.application.bioluminate.pml_menus.LabelAtomIdentSubMenu
schrodinger.application.bioluminate.pml_menus.LabelChains
schrodinger.application.bioluminate.pml_menus.LabelMenu
schrodinger.application.bioluminate.pml_menus.LabelOtherSubMenu
schrodinger.application.bioluminate.pml_menus.LabelResidues
schrodinger.application.bioluminate.pml_menus.LigandActionMixin
schrodinger.application.bioluminate.pml_menus.LigandPreset
schrodinger.application.bioluminate.pml_menus.LigandSitesSubMenu
schrodinger.application.bioluminate.pml_menus.MAction
schrodinger.application.bioluminate.pml_menus.MWidgetAction
schrodinger.application.bioluminate.pml_menus.MakeProjectEntry
schrodinger.application.bioluminate.pml_menus.ModifySubMenu
schrodinger.application.bioluminate.pml_menus.ObjectFreeContextSubMenu
schrodinger.application.bioluminate.pml_menus.Orient
schrodinger.application.bioluminate.pml_menus.Origin
schrodinger.application.bioluminate.pml_menus.PMLContextMenu
schrodinger.application.bioluminate.pml_menus.PMLMenu
schrodinger.application.bioluminate.pml_menus.PolarContactsObject
schrodinger.application.bioluminate.pml_menus.PolarContactsOnlyMainchain
schrodinger.application.bioluminate.pml_menus.PolarContactsOnlySidechain
schrodinger.application.bioluminate.pml_menus.PolarContactsSubMenu
schrodinger.application.bioluminate.pml_menus.PolarContactsToAnyAtoms
schrodinger.application.bioluminate.pml_menus.PolarContactsToAnyNonSolvent
schrodinger.application.bioluminate.pml_menus.PolarContactsToEntry
schrodinger.application.bioluminate.pml_menus.PolarContactsToEntryWithoutSolvent
schrodinger.application.bioluminate.pml_menus.PolarContactsWithSidechains
schrodinger.application.bioluminate.pml_menus.PolarContactsWithSolvent
schrodinger.application.bioluminate.pml_menus.PolarContactsWithoutIntraMainchain
schrodinger.application.bioluminate.pml_menus.PolarContactsWithoutMainchain
schrodinger.application.bioluminate.pml_menus.PolarContactsWithoutSolvent
schrodinger.application.bioluminate.pml_menus.PresetAction
schrodinger.application.bioluminate.pml_menus.PresetSubMenu
schrodinger.application.bioluminate.pml_menus.PrettyPubPreset
schrodinger.application.bioluminate.pml_menus.Quit
schrodinger.application.bioluminate.pml_menus.Ray
schrodinger.application.bioluminate.pml_menus.RecentCarbonColorSubMenu
schrodinger.application.bioluminate.pml_menus.RecentColorSubMenu
schrodinger.application.bioluminate.pml_menus.RecentHydrogenColorSubMenu
schrodinger.application.bioluminate.pml_menus.RecentObjectColorSubMenu
schrodinger.application.bioluminate.pml_menus.RegionInfo
schrodinger.application.bioluminate.pml_menus.Reinitialize
schrodinger.application.bioluminate.pml_menus.RemoveHydrogens
schrodinger.application.bioluminate.pml_menus.RemovePC
schrodinger.application.bioluminate.pml_menus.RemoveWaters
schrodinger.application.bioluminate.pml_menus.Rename
schrodinger.application.bioluminate.pml_menus.RestrictSelection
schrodinger.application.bioluminate.pml_menus.RestrictSubMenu
schrodinger.application.bioluminate.pml_menus.RestrictToInorganic
schrodinger.application.bioluminate.pml_menus.RestrictToOrganic
schrodinger.application.bioluminate.pml_menus.RestrictToPolymer
schrodinger.application.bioluminate.pml_menus.RestrictToSolvent
schrodinger.application.bioluminate.pml_menus.RestrictToVisible
schrodinger.application.bioluminate.pml_menus.ResultsWindow
schrodinger.application.bioluminate.pml_menus.RockData
schrodinger.application.bioluminate.pml_menus.Select
schrodinger.application.bioluminate.pml_menus.SelectWithinAny
schrodinger.application.bioluminate.pml_menus.SelectWithinCalpha
schrodinger.application.bioluminate.pml_menus.SelectWithinChain
schrodinger.application.bioluminate.pml_menus.SelectWithinEntry
schrodinger.application.bioluminate.pml_menus.SelectWithinMolecule
schrodinger.application.bioluminate.pml_menus.SelectWithinResidue
schrodinger.application.bioluminate.pml_menus.SelectedAtomContextActionSubMenu
schrodinger.application.bioluminate.pml_menus.SelectedAtomContextMenu
schrodinger.application.bioluminate.pml_menus.SelectionSubMenu
schrodinger.application.bioluminate.pml_menus.ShowBAndS
schrodinger.application.bioluminate.pml_menus.ShowCartoon
schrodinger.application.bioluminate.pml_menus.ShowLabel
schrodinger.application.bioluminate.pml_menus.ShowLigandLines
schrodinger.application.bioluminate.pml_menus.ShowLigandSpheres
schrodinger.application.bioluminate.pml_menus.ShowLigandTubes
schrodinger.application.bioluminate.pml_menus.ShowLines
schrodinger.application.bioluminate.pml_menus.ShowMenu
schrodinger.application.bioluminate.pml_menus.ShowMesh
schrodinger.application.bioluminate.pml_menus.ShowNonBonded
schrodinger.application.bioluminate.pml_menus.ShowNonBondedSpheres
schrodinger.application.bioluminate.pml_menus.ShowOrganicMenu
schrodinger.application.bioluminate.pml_menus.ShowRibbon
schrodinger.application.bioluminate.pml_menus.ShowSpheres
schrodinger.application.bioluminate.pml_menus.ShowSubstructureMenu
schrodinger.application.bioluminate.pml_menus.ShowSurface
schrodinger.application.bioluminate.pml_menus.ShowTubes
schrodinger.application.bioluminate.pml_menus.SimplePreset
schrodinger.application.bioluminate.pml_menus.SpaceContextMenu
schrodinger.application.bioluminate.pml_menus.SubstructureContextSubMenu
schrodinger.application.bioluminate.pml_menus.SumFormalCharge
schrodinger.application.bioluminate.pml_menus.SumPartialCharge
schrodinger.application.bioluminate.pml_menus.SurfaceAreaSubMenu
schrodinger.application.bioluminate.pml_menus.SurfaceRender
schrodinger.application.bioluminate.pml_menus.TechnicalPreset
schrodinger.application.bioluminate.pml_menus.ToggleState
schrodinger.application.bioluminate.pml_menus.ToggleStateSubMenu
schrodinger.application.bioluminate.pml_menus.ToggleVisibleObjectsState
schrodinger.application.bioluminate.pml_menus.Zoom
schrodinger.application.bioluminate.propfilter.BooleanDatabaseCriterion
schrodinger.application.bioluminate.propfilter.CriteriaListModel
schrodinger.application.bioluminate.propfilter.NumericalDatabaseCriterion
schrodinger.application.bioluminate.propfilter.PropFilterDialog
schrodinger.application.bioluminate.propfilter.PropertySelectorWithRanges
schrodinger.application.bioluminate.propfilter.SelectingFilteredListWidget
schrodinger.application.bioluminate.propfilter.StringDatabaseCriterion
schrodinger.application.bioluminate.propfilter.ValueSelectionDialog
schrodinger.application.bioluminate.propfilter_ui.Ui_Form
schrodinger.application.bioluminate.protein.Consensus
schrodinger.application.bioluminate.protein.Mutation
schrodinger.application.bioluminate.protein.Mutator
schrodinger.application.bioluminate.protein.OrderedResidueDict
schrodinger.application.bioluminate.protein.PrimeConfig
schrodinger.application.bioluminate.protein.PrimeStructure
schrodinger.application.bioluminate.protein.PropertyCalculator
schrodinger.application.bioluminate.protein.PropkaError
schrodinger.application.bioluminate.protein.Refiner
schrodinger.application.bioluminate.protein_report_widget.DataModel
schrodinger.application.bioluminate.protein_report_widget.ReportFrame
schrodinger.application.bioluminate.protein_structure_quality.DataModelWithChart
schrodinger.application.bioluminate.protein_structure_quality.FakeMaestro
schrodinger.application.bioluminate.protein_structure_quality.HomologyRama
schrodinger.application.bioluminate.protein_structure_quality.MultiReportWithChart
schrodinger.application.bioluminate.protein_structure_quality.ProteinStructureQualityViewer
schrodinger.application.bioluminate.protein_structure_quality_ui.Ui_Form
schrodinger.application.bioluminate.sliderchart.SlidableHLine
schrodinger.application.bioluminate.sliderchart.SlidableLine
schrodinger.application.bioluminate.sliderchart.SlidableVLine
schrodinger.application.bioluminate.sliderchart.SliderPlot
schrodinger.application.bioluminate.ssv.toolbars.AntibodyNumberingToolBar
schrodinger.application.bioluminate.ssv.toolbars.ConsensusToolBar
schrodinger.application.bioluminate.ssv.toolbars.FindToolBar
schrodinger.application.bioluminate.ssv.toolbars.ImportToolBar
schrodinger.application.bioluminate.ssv.viewer.SequenceDockWidget
schrodinger.application.bioluminate.ssv.viewer.SimplifiedSequenceViewer
schrodinger.application.bioluminate.ssv.viewer.ViewerWindow
schrodinger.application.canvas.cluster.CanvasFingerprintCluster
schrodinger.application.canvas.cluster.CanvasFingerprintClusterCLI
schrodinger.application.canvas.clustergui.CanvasFingerprintClusterGUI
schrodinger.application.canvas.clustergui.ClusterStatisticsPlotDialog
schrodinger.application.canvas.clustergui.DendrogramPlotDialog
schrodinger.application.canvas.clustergui.DistanceMatrixPlotDialog
schrodinger.application.canvas.fingerprint.CanvasFingerprint
schrodinger.application.canvas.fingerprint.CanvasFingerprintGenerator
schrodinger.application.canvas.fingerprint.CanvasFingerprintGeneratorCLI
schrodinger.application.canvas.fingerprintgui.CanvasFingerprintGeneratorGUI
schrodinger.application.canvas.similarity.CanvasFingerprintSimilarity
schrodinger.application.canvas.similarity.CanvasFingerprintSimilarityCLI
schrodinger.application.canvas.similarity.CanvasSimilarityNotImplemented
schrodinger.application.canvas.similaritygui.CanvasFingerprintSimilarityGUI
schrodinger.application.combiglide.corehop.SubstCoreDatabase
schrodinger.application.desmond.antlr3.debug.BlankDebugEventListener
schrodinger.application.desmond.antlr3.debug.DebugEventListener
schrodinger.application.desmond.antlr3.debug.DebugEventSocketProxy
schrodinger.application.desmond.antlr3.debug.DebugParser
schrodinger.application.desmond.antlr3.debug.DebugTokenStream
schrodinger.application.desmond.antlr3.debug.DebugTreeAdaptor
schrodinger.application.desmond.antlr3.debug.RecordDebugEventListener
schrodinger.application.desmond.antlr3.debug.TraceDebugEventListener
schrodinger.application.desmond.antlr3.dfa.DFA
schrodinger.application.desmond.antlr3.dottreegen.DOTTreeGenerator
schrodinger.application.desmond.antlr3.exceptions.BacktrackingFailed
schrodinger.application.desmond.antlr3.exceptions.EarlyExitException
schrodinger.application.desmond.antlr3.exceptions.FailedPredicateException
schrodinger.application.desmond.antlr3.exceptions.MismatchedNotSetException
schrodinger.application.desmond.antlr3.exceptions.MismatchedRangeException
schrodinger.application.desmond.antlr3.exceptions.MismatchedSetException
schrodinger.application.desmond.antlr3.exceptions.MismatchedTokenException
schrodinger.application.desmond.antlr3.exceptions.MismatchedTreeNodeException
schrodinger.application.desmond.antlr3.exceptions.MissingTokenException
schrodinger.application.desmond.antlr3.exceptions.NoViableAltException
schrodinger.application.desmond.antlr3.exceptions.RecognitionException
schrodinger.application.desmond.antlr3.exceptions.UnwantedTokenException
schrodinger.application.desmond.antlr3.main.LexerMain
schrodinger.application.desmond.antlr3.main.ParserMain
schrodinger.application.desmond.antlr3.main.WalkerMain
schrodinger.application.desmond.antlr3.main._Main
schrodinger.application.desmond.antlr3.recognizers.BaseRecognizer
schrodinger.application.desmond.antlr3.recognizers.Lexer
schrodinger.application.desmond.antlr3.recognizers.Parser
schrodinger.application.desmond.antlr3.recognizers.ParserRuleReturnScope
schrodinger.application.desmond.antlr3.recognizers.RecognizerSharedState
schrodinger.application.desmond.antlr3.recognizers.RuleReturnScope
schrodinger.application.desmond.antlr3.recognizers.TokenSource
schrodinger.application.desmond.antlr3.streams.ANTLRFileStream
schrodinger.application.desmond.antlr3.streams.ANTLRInputStream
schrodinger.application.desmond.antlr3.streams.ANTLRStringStream
schrodinger.application.desmond.antlr3.streams.CharStream
schrodinger.application.desmond.antlr3.streams.CommonTokenStream
schrodinger.application.desmond.antlr3.streams.DeleteOp
schrodinger.application.desmond.antlr3.streams.InsertBeforeOp
schrodinger.application.desmond.antlr3.streams.IntStream
schrodinger.application.desmond.antlr3.streams.ReplaceOp
schrodinger.application.desmond.antlr3.streams.RewriteOperation
schrodinger.application.desmond.antlr3.streams.TokenRewriteStream
schrodinger.application.desmond.antlr3.streams.TokenStream
schrodinger.application.desmond.antlr3.tokens.ClassicToken
schrodinger.application.desmond.antlr3.tokens.CommonToken
schrodinger.application.desmond.antlr3.tokens.Token
schrodinger.application.desmond.antlr3.tree.BaseTree
schrodinger.application.desmond.antlr3.tree.BaseTreeAdaptor
schrodinger.application.desmond.antlr3.tree.CommonErrorNode
schrodinger.application.desmond.antlr3.tree.CommonTree
schrodinger.application.desmond.antlr3.tree.CommonTreeAdaptor
schrodinger.application.desmond.antlr3.tree.CommonTreeNodeStream
schrodinger.application.desmond.antlr3.tree.RewriteCardinalityException
schrodinger.application.desmond.antlr3.tree.RewriteEarlyExitException
schrodinger.application.desmond.antlr3.tree.RewriteEmptyStreamException
schrodinger.application.desmond.antlr3.tree.RewriteRuleElementStream
schrodinger.application.desmond.antlr3.tree.RewriteRuleNodeStream
schrodinger.application.desmond.antlr3.tree.RewriteRuleSubtreeStream
schrodinger.application.desmond.antlr3.tree.RewriteRuleTokenStream
schrodinger.application.desmond.antlr3.tree.Tree
schrodinger.application.desmond.antlr3.tree.TreeAdaptor
schrodinger.application.desmond.antlr3.tree.TreeNodeStream
schrodinger.application.desmond.antlr3.tree.TreeParser
schrodinger.application.desmond.antlr3.tree.TreeRuleReturnScope
schrodinger.application.desmond.antlr3.tree.TreeVisitor
schrodinger.application.desmond.antlr3.treewizard.TreePattern
schrodinger.application.desmond.antlr3.treewizard.TreePatternLexer
schrodinger.application.desmond.antlr3.treewizard.TreePatternParser
schrodinger.application.desmond.antlr3.treewizard.TreePatternTreeAdaptor
schrodinger.application.desmond.antlr3.treewizard.TreeWizard
schrodinger.application.desmond.antlr3.treewizard.WildcardTreePattern
schrodinger.application.desmond.cmj.AslValidator
schrodinger.application.desmond.cmj.Engine
schrodinger.application.desmond.cmj.Job
schrodinger.application.desmond.cmj.Job.Time
schrodinger.application.desmond.cmj.JobAdapter
schrodinger.application.desmond.cmj.JobErrorHandler
schrodinger.application.desmond.cmj.JobInput
schrodinger.application.desmond.cmj.JobOutput
schrodinger.application.desmond.cmj.JobStatus
schrodinger.application.desmond.cmj.ParseError
schrodinger.application.desmond.cmj.Queue
schrodinger.application.desmond.cmj.RetryTimer
schrodinger.application.desmond.cmj.StageBase
schrodinger.application.desmond.cmj.StageBase.__metaclass__
schrodinger.application.desmond.cmj.StopRequest
schrodinger.application.desmond.cmj._create_param_when_needed
schrodinger.application.desmond.cms.AtomGroup
schrodinger.application.desmond.cms.Cms
schrodinger.application.desmond.cms.Constraint
schrodinger.application.desmond.cms.Pseudo
schrodinger.application.desmond.cms.Restrain
schrodinger.application.desmond.cms.Site
schrodinger.application.desmond.cms.Vdw
schrodinger.application.desmond.config.DEFAULT_SETTING
schrodinger.application.desmond.config._FepSchedule
schrodinger.application.desmond.config._FepSchedule.Helper
schrodinger.application.desmond.config._create_when_needed
schrodinger.application.desmond.cwidget.AdvLabel
schrodinger.application.desmond.cwidget.CpuValidator
schrodinger.application.desmond.cwidget.DesresTradeMark
schrodinger.application.desmond.cwidget.EntryField
schrodinger.application.desmond.cwidget.FileEntry
schrodinger.application.desmond.cwidget.StartDialog1
schrodinger.application.desmond.cwidget.StartDialog2
schrodinger.application.desmond.cwidget.StartDialogBase
schrodinger.application.desmond.cwidget._SdDetailFrame
schrodinger.application.desmond.cwidget._SdIncorpFrame
schrodinger.application.desmond.cwidget._SdJobFrame
schrodinger.application.desmond.cwidget._SdMasterjob
schrodinger.application.desmond.cwidget._SdSubjobFrame
schrodinger.application.desmond.energygroup.EnergyComponent
schrodinger.application.desmond.energygroup.EnergyGroup
schrodinger.application.desmond.energygroup.EnergyGroupAnalysis
schrodinger.application.desmond.energygroup.PairDict
schrodinger.application.desmond.energygroup._Group
schrodinger.application.desmond.enhanced_sampling.FcnTypes.ArraySyntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.BinaryThreadSyntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.MetaSyntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.RMSDSyntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.SimpleSyntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.Syntax
schrodinger.application.desmond.enhanced_sampling.FcnTypes.ThreadSyntax
schrodinger.application.desmond.enhanced_sampling.mexpLexer.mexpLexer
schrodinger.application.desmond.enhanced_sampling.mexpLexer.mexpLexer.DFA12
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA1
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA15
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA17
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA18
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA19
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA20
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA21
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA22
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA24
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.DFA25
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.atom_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.bind_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.block_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.comp_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.decl_meta_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.decl_output_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.decl_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.expComp_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.exprOrBind_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.expr_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.factor_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.fcnCall_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.header_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.if__return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.iter_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.meta_term_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.output_term_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.prog_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.series_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.signedExpComp_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.static_return
schrodinger.application.desmond.enhanced_sampling.mexpParser.mexpParser.varWithType_return
schrodinger.application.desmond.enhsamp.ASLObject
schrodinger.application.desmond.enhsamp.Bind
schrodinger.application.desmond.enhsamp.Env
schrodinger.application.desmond.enhsamp.FcnCall
schrodinger.application.desmond.enhsamp.If
schrodinger.application.desmond.enhsamp.Iter
schrodinger.application.desmond.enhsamp.Let
schrodinger.application.desmond.enhsamp.Lit
schrodinger.application.desmond.enhsamp.Meta
schrodinger.application.desmond.enhsamp.Node
schrodinger.application.desmond.enhsamp.Series
schrodinger.application.desmond.enhsamp.String
schrodinger.application.desmond.enhsamp.Var
schrodinger.application.desmond.enhsamp.binding
schrodinger.application.desmond.envir.CONST
schrodinger.application.desmond.envir._create_when_needed
schrodinger.application.desmond.fep_gui.AdvLabel
schrodinger.application.desmond.fep_gui.DesmondApp
schrodinger.application.desmond.fep_gui.FragClass
schrodinger.application.desmond.fep_gui.HelpLabel
schrodinger.application.desmond.fep_gui.HorizontalBar
schrodinger.application.desmond.fep_gui.McproApp
schrodinger.application.desmond.fep_gui.MultiSelectComboBox
schrodinger.application.desmond.fep_gui.MutClass
schrodinger.application.desmond.fep_gui.PathModel
schrodinger.application.desmond.fep_gui.PickAtomToggle
schrodinger.application.desmond.fep_gui.PickBondToggle
schrodinger.application.desmond.fep_gui.ResiduesDelegate
schrodinger.application.desmond.fep_gui.ResiduesModel
schrodinger.application.desmond.fep_gui.StrucListModel
schrodinger.application.desmond.fep_gui._App
schrodinger.application.desmond.fep_gui._Atom
schrodinger.application.desmond.fep_gui._DesmondProt
schrodinger.application.desmond.fep_gui._LigMut
schrodinger.application.desmond.fep_gui._McproProt
schrodinger.application.desmond.fep_gui._Pert
schrodinger.application.desmond.fep_gui._ProMut
schrodinger.application.desmond.fep_gui._ProMut._Site
schrodinger.application.desmond.fep_gui._ProtItem
schrodinger.application.desmond.fep_gui._RingMut
schrodinger.application.desmond.fepana.DeltaEnergy
schrodinger.application.desmond.fepana.FreeEnergyContrib
schrodinger.application.desmond.ffiostructure.CMSReader
schrodinger.application.desmond.ffiostructure.FFIOStructure
schrodinger.application.desmond.ffiostructure._Element
schrodinger.application.desmond.ffiostructure._ElementProperty
schrodinger.application.desmond.ffiostructure._FEPIO
schrodinger.application.desmond.ffiostructure._FEPIOAngleMap
schrodinger.application.desmond.ffiostructure._FEPIOAngleMapContainer
schrodinger.application.desmond.ffiostructure._FEPIOAtomMap
schrodinger.application.desmond.ffiostructure._FEPIOAtomMapContainer
schrodinger.application.desmond.ffiostructure._FEPIOBondMap
schrodinger.application.desmond.ffiostructure._FEPIOBondMapContainer
schrodinger.application.desmond.ffiostructure._FEPIODihedMap
schrodinger.application.desmond.ffiostructure._FEPIODihedMapContainer
schrodinger.application.desmond.ffiostructure._FEPIOElement
schrodinger.application.desmond.ffiostructure._FEPIOElementProperty
schrodinger.application.desmond.ffiostructure._FEPIOExclMap
schrodinger.application.desmond.ffiostructure._FEPIOExclMapContainer
schrodinger.application.desmond.ffiostructure._FEPIOOtherBlock
schrodinger.application.desmond.ffiostructure._FEPIOOtherBlockContainer
schrodinger.application.desmond.ffiostructure._FEPIOPairMap
schrodinger.application.desmond.ffiostructure._FEPIOPairMapContainer
schrodinger.application.desmond.ffiostructure._FEPIOProperty
schrodinger.application.desmond.ffiostructure._FEPIOSubBlock
schrodinger.application.desmond.ffiostructure._FEPIOSubBlockContainer
schrodinger.application.desmond.ffiostructure._FEPIOSubBlockMeta
schrodinger.application.desmond.ffiostructure._FEPIOSubBlockProperty
schrodinger.application.desmond.ffiostructure._FFIO
schrodinger.application.desmond.ffiostructure._FFIOAngle
schrodinger.application.desmond.ffiostructure._FFIOAngleContainer
schrodinger.application.desmond.ffiostructure._FFIOAngleFBHW
schrodinger.application.desmond.ffiostructure._FFIOAngleFBHWContainer
schrodinger.application.desmond.ffiostructure._FFIOBond
schrodinger.application.desmond.ffiostructure._FFIOBondContainer
schrodinger.application.desmond.ffiostructure._FFIOConstraint
schrodinger.application.desmond.ffiostructure._FFIOConstraintContainer
schrodinger.application.desmond.ffiostructure._FFIODihedral
schrodinger.application.desmond.ffiostructure._FFIODihedralContainer
schrodinger.application.desmond.ffiostructure._FFIOElement
schrodinger.application.desmond.ffiostructure._FFIOElementProperty
schrodinger.application.desmond.ffiostructure._FFIOExclusion
schrodinger.application.desmond.ffiostructure._FFIOExclusionContainer
schrodinger.application.desmond.ffiostructure._FFIOImproperFBHW
schrodinger.application.desmond.ffiostructure._FFIOImproperFBHWContainer
schrodinger.application.desmond.ffiostructure._FFIOOtherBlock
schrodinger.application.desmond.ffiostructure._FFIOOtherBlockContainer
schrodinger.application.desmond.ffiostructure._FFIOPair
schrodinger.application.desmond.ffiostructure._FFIOPairContainer
schrodinger.application.desmond.ffiostructure._FFIOPosFBHW
schrodinger.application.desmond.ffiostructure._FFIOPosFBHWContainer
schrodinger.application.desmond.ffiostructure._FFIOProperty
schrodinger.application.desmond.ffiostructure._FFIOPseudo
schrodinger.application.desmond.ffiostructure._FFIOPseudoContainer
schrodinger.application.desmond.ffiostructure._FFIORestraint
schrodinger.application.desmond.ffiostructure._FFIORestraintContainer
schrodinger.application.desmond.ffiostructure._FFIOSite
schrodinger.application.desmond.ffiostructure._FFIOSiteContainer
schrodinger.application.desmond.ffiostructure._FFIOStretchFBHW
schrodinger.application.desmond.ffiostructure._FFIOStretchFBHWContainer
schrodinger.application.desmond.ffiostructure._FFIOSubBlock
schrodinger.application.desmond.ffiostructure._FFIOSubBlockContainer
schrodinger.application.desmond.ffiostructure._FFIOSubBlockMeta
schrodinger.application.desmond.ffiostructure._FFIOSubBlockProperty
schrodinger.application.desmond.ffiostructure._FFIOVdwtype
schrodinger.application.desmond.ffiostructure._FFIOVdwtypeContainer
schrodinger.application.desmond.ffiostructure._FFIOVdwtypescombined
schrodinger.application.desmond.ffiostructure._FFIOVdwtypescombinedContainer
schrodinger.application.desmond.ffiostructure._FFIOVirtual
schrodinger.application.desmond.ffiostructure._FFIOVirtualContainer
schrodinger.application.desmond.ffiostructure._OtherBlock
schrodinger.application.desmond.ffiostructure._OtherBlockContainer
schrodinger.application.desmond.gaussian_filter.GaussianFilter
schrodinger.application.desmond.gui.AdvOptionsFrame
schrodinger.application.desmond.gui.AtomGroupDelegate
schrodinger.application.desmond.gui.AtomGroupFrame
schrodinger.application.desmond.gui.AtomGroupModel
schrodinger.application.desmond.gui.AtomGroupRow
schrodinger.application.desmond.gui.EnsembleClassFrame
schrodinger.application.desmond.gui.EnsembleTab
schrodinger.application.desmond.gui.GuiApp
schrodinger.application.desmond.gui.HorizontalBar
schrodinger.application.desmond.gui.InputGroup
schrodinger.application.desmond.gui.IntegrationTab
schrodinger.application.desmond.gui.InteractionTab
schrodinger.application.desmond.gui.MdGroup
schrodinger.application.desmond.gui.MdcAdvancedDialog
schrodinger.application.desmond.gui.MdcMiscTab
schrodinger.application.desmond.gui.MinAdvancedDialog
schrodinger.application.desmond.gui.MinMiscTab
schrodinger.application.desmond.gui.MinOutputFrame
schrodinger.application.desmond.gui.MinimizationTab
schrodinger.application.desmond.gui.MinimizerFrame
schrodinger.application.desmond.gui.OutputTab
schrodinger.application.desmond.gui.PosResDelegate
schrodinger.application.desmond.gui.PosResModel
schrodinger.application.desmond.gui.PosResRow
schrodinger.application.desmond.gui.RandVelFrame
schrodinger.application.desmond.gui.RelaxFrame
schrodinger.application.desmond.gui.RestraintsTab
schrodinger.application.desmond.gui.SimOptionsFrame
schrodinger.application.desmond.gui.TableModel
schrodinger.application.desmond.gui.TempItemDelegate
schrodinger.application.desmond.gui._AtomGroup
schrodinger.application.desmond.gui._BaseAdvancedDialog
schrodinger.application.desmond.gui._BaseGroup
schrodinger.application.desmond.gui._MdcBase
schrodinger.application.desmond.guide.Guide
schrodinger.application.desmond.guide._Step
schrodinger.application.desmond.icon._Global
schrodinger.application.desmond.maestro.Entry
schrodinger.application.desmond.maestro.EntryGroup
schrodinger.application.desmond.maestro.Workspace
schrodinger.application.desmond.mdkey.AtomGroup
schrodinger.application.desmond.mdkey.CfgAtom
schrodinger.application.desmond.mdkey.FepSchedule
schrodinger.application.desmond.mdkey.GuiMap
schrodinger.application.desmond.mdkey.Key
schrodinger.application.desmond.mdkey.List
schrodinger.application.desmond.mdkey._Bool
schrodinger.application.desmond.mdkey._Evalor
schrodinger.application.desmond.measurement.Measurement
schrodinger.application.desmond.meta.CV
schrodinger.application.desmond.meta.CVAngle
schrodinger.application.desmond.meta.CVDihedral
schrodinger.application.desmond.meta.CVDist
schrodinger.application.desmond.meta.CVrmsd
schrodinger.application.desmond.meta.CVzdist0
schrodinger.application.desmond.meta.CmsModel
schrodinger.application.desmond.meta.Meta
schrodinger.application.desmond.meta.MetaDynamicsAnalysis
schrodinger.application.desmond.meta._Backend
schrodinger.application.desmond.multisimstartup.Help
schrodinger.application.desmond.multisimstartup.Startup
schrodinger.application.desmond.picklejar.Picklable
schrodinger.application.desmond.picklejar.Picklable.__metaclass__
schrodinger.application.desmond.picklejar.PickleJar
schrodinger.application.desmond.picklejar.PickleState
schrodinger.application.desmond.simulation_block_data.Array_Prop
schrodinger.application.desmond.simulation_block_test.Block
schrodinger.application.desmond.simulation_block_test.BoxSize
schrodinger.application.desmond.simulation_block_test.E_f
schrodinger.application.desmond.simulation_block_test.E_k
schrodinger.application.desmond.simulation_block_test.E_x
schrodinger.application.desmond.simulation_block_test.Energy
schrodinger.application.desmond.simulation_block_test.Job_Details
schrodinger.application.desmond.simulation_block_test.PotentialEnergy
schrodinger.application.desmond.simulation_block_test.Pressure
schrodinger.application.desmond.simulation_block_test.T_0
schrodinger.application.desmond.simulation_block_test.Temperature
schrodinger.application.desmond.simulation_block_test.Test
schrodinger.application.desmond.simulation_block_test.V
schrodinger.application.desmond.stage.Analysis
schrodinger.application.desmond.stage.AnalysisJob
schrodinger.application.desmond.stage.AssignForcefield
schrodinger.application.desmond.stage.BuildGeometry
schrodinger.application.desmond.stage.Concluder
schrodinger.application.desmond.stage.DesmondJob
schrodinger.application.desmond.stage.Extern
schrodinger.application.desmond.stage.FepAnalysis
schrodinger.application.desmond.stage.FepAnalysis.Structure
schrodinger.application.desmond.stage.FepJob
schrodinger.application.desmond.stage.FepVrun
schrodinger.application.desmond.stage.FepanaJob
schrodinger.application.desmond.stage.LambdaHopping
schrodinger.application.desmond.stage.McproSimulate
schrodinger.application.desmond.stage.McproStageBase
schrodinger.application.desmond.stage.McproSystemBuilder
schrodinger.application.desmond.stage.MetadynamicsAnalysisJob
schrodinger.application.desmond.stage.Minimize
schrodinger.application.desmond.stage.Multisim
schrodinger.application.desmond.stage.Primer
schrodinger.application.desmond.stage.ReplicaExchange
schrodinger.application.desmond.stage.Reporter
schrodinger.application.desmond.stage.SeaJob
schrodinger.application.desmond.stage.Simulate
schrodinger.application.desmond.stage.SolvatePocket
schrodinger.application.desmond.stage.Stop
schrodinger.application.desmond.stage.SystemBuilder
schrodinger.application.desmond.stage.Task
schrodinger.application.desmond.stage.TimeSeriesAnalysisJob
schrodinger.application.desmond.stage.Trajectory
schrodinger.application.desmond.stage.Trim
schrodinger.application.desmond.stage.Vrun
schrodinger.application.desmond.stage.WaterMap
schrodinger.application.desmond.stage.WaterMapAnaJob
schrodinger.application.desmond.stage.WaterMapCluster
schrodinger.application.desmond.stage.WaterMapPostAnalysis
schrodinger.application.desmond.system_builder_inp.SystemBuilderInput
schrodinger.application.desmond.system_builder_util.DesmondBoxSize
schrodinger.application.desmond.systype.DesmondTyper
schrodinger.application.desmond.systype.DetectionError
schrodinger.application.desmond.systype.FormatError
schrodinger.application.desmond.systype.McproTyper
schrodinger.application.desmond.systype.SysType
schrodinger.application.desmond.systype.TyperBase
schrodinger.application.desmond.systype.TyperBase.__metaclass__
schrodinger.application.desmond.systype.UnknownAppError
schrodinger.application.desmond.systype.UnknownRuleError
schrodinger.application.desmond.systype.WatermapTyper
schrodinger.application.desmond.table.Table
schrodinger.application.desmond.table.TableButton
schrodinger.application.desmond.table.TableCheckbutton
schrodinger.application.desmond.table.TableComboBox
schrodinger.application.desmond.table.TableComboBox._ComboBox
schrodinger.application.desmond.table.TableEntry
schrodinger.application.desmond.table.TableEntryField
schrodinger.application.desmond.table.TableEntryField._EntryField
schrodinger.application.desmond.table.TableLabel
schrodinger.application.desmond.table.TableRadiobutton
schrodinger.application.desmond.table.TableSpinbox
schrodinger.application.desmond.table.TableSpinbox._Spinbox
schrodinger.application.desmond.table.TableTextButton
schrodinger.application.desmond.table.TableTitle
schrodinger.application.desmond.table.TextButton
schrodinger.application.desmond.table._Index
schrodinger.application.desmond.table._TableWidget
schrodinger.application.desmond.util.Counter
schrodinger.application.desmond.util.EntryRestrictor
schrodinger.application.desmond.util.InfAutofill
schrodinger.application.desmond.util.TestSuite
schrodinger.application.glide.ensemble_selection.Ensemble
schrodinger.application.glide.ensemble_selection.EnsembleSelection
schrodinger.application.glide.glide.AcceptorConstraint
schrodinger.application.glide.glide.Constraint
schrodinger.application.glide.glide.ConstraintGroup
schrodinger.application.glide.glide.Dock
schrodinger.application.glide.glide.DonorConstraint
schrodinger.application.glide.glide.FeaturePattern
schrodinger.application.glide.glide.GlideJob
schrodinger.application.glide.glide.Gridgen
schrodinger.application.glide.glide.HydrophobicConstraint
schrodinger.application.glide.glide.MetalConstraint
schrodinger.application.glide.glide.NOEConstraint
schrodinger.application.glide.glide.PositionalConstraint
schrodinger.application.glide.glideanalysis.PoseLibrary
schrodinger.application.glide.liaison_lsbd.liaison
schrodinger.application.glide.newxp_reorg_fit.FitNewxpReorgEnergy
schrodinger.application.glide.newxp_reorg_fit.ReorgFitting
schrodinger.application.glide.poseviewconvert.Complex
schrodinger.application.glide.xp6classes.Complex
schrodinger.application.glide.xp6classes.EnsembleLigand
schrodinger.application.glide.xp6classes.NewxpJobdata
schrodinger.application.glide.xpdes.XpDesReader
schrodinger.application.glide.xpdes.XpDesWriter
schrodinger.application.glide.xpdes._XpDesBlock
schrodinger.application.inputconfig.InputConfig
schrodinger.application.jaguar.input.GenOptions
schrodinger.application.jaguar.input.JaguarInput
schrodinger.application.jaguar.mmjag.MmJag
schrodinger.application.jaguar.output.BondCharge
schrodinger.application.jaguar.output.CaseInsensitiveString
schrodinger.application.jaguar.output.Dipole
schrodinger.application.jaguar.output.FukuiIndices
schrodinger.application.jaguar.output.JaguarAtomicResults
schrodinger.application.jaguar.output.JaguarOptions
schrodinger.application.jaguar.output.JaguarOutput
schrodinger.application.jaguar.output.JaguarParseError
schrodinger.application.jaguar.output.JaguarResults
schrodinger.application.jaguar.output.NormalMode
schrodinger.application.jaguar.output.Orbital
schrodinger.application.jaguar.output.ScfIteration
schrodinger.application.jaguar.output.TextParser
schrodinger.application.jaguar.output.ThermoCollection
schrodinger.application.jaguar.output.ThermoProp
schrodinger.application.jaguar.output.ZVariables
schrodinger.application.jaguar.output._Attribute
schrodinger.application.jaguar.output.line_enumerate
schrodinger.application.jaguar.scan.Scan
schrodinger.application.lid.lid2d.annotators.GetLabelBBXAnnotator
schrodinger.application.lid.lid2d.annotators.LidAnnotator
schrodinger.application.lid.lid2d.annotators.SetCoordinateAnnotator
schrodinger.application.lid.lid2d.intervaltree2d.FirstSecondaryStructure
schrodinger.application.lid.lid2d.intervaltree2d.IntervalTree
schrodinger.application.lid.lid2d.intervaltree2d.IntervalTreeNode
schrodinger.application.lid.lid2d.intervaltree2d.SecondSecondaryStructure
schrodinger.application.lid.lid_savedialog_ui.Ui_Dialog
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram
schrodinger.application.lid.ligand_interaction_diagram.UserChooseNothingException
schrodinger.application.lid.ligand_interaction_diagram_gui.App
schrodinger.application.lid.ligand_interaction_diagram_gui.ChooseLigandDialog
schrodinger.application.lid.ligand_interaction_diagram_gui.ChooseLigandModel
schrodinger.application.lid.ligand_interaction_diagram_gui.LegendDialog
schrodinger.application.lid.ligand_interaction_diagram_gui.SaveFileDialog
schrodinger.application.lid.ligand_interaction_diagram_gui.TwoDWidget
schrodinger.application.lid.ligand_interaction_diagram_ui.Ui_Form
schrodinger.application.macromodel.input.ConfSearch
schrodinger.application.macromodel.input.EmbraceConfSearch
schrodinger.application.macromodel.input.EmbraceMinimization
schrodinger.application.macromodel.input.EnergyListing
schrodinger.application.macromodel.input.Minimization
schrodinger.application.macromodel.input.Minta
schrodinger.application.macromodel.input.RCE
schrodinger.application.macromodel.input._MacroModel
schrodinger.application.macromodel.utils.CluUtil
schrodinger.application.macromodel.utils.ComUtil
schrodinger.application.macromodel.utils.ComUtilAppSci
schrodinger.application.macromodel.utils.ComUtil_2010
schrodinger.application.macromodel.utils.SbcUtil
schrodinger.application.mcpro.ddg.DrawDdgPanel
schrodinger.application.mcpro.fep.DrawFepPanel
schrodinger.application.mcpro.guide.Guide
schrodinger.application.mcpro.lrm.DrawLrmPanel
schrodinger.application.mcpro.mc.DrawMcPanel
schrodinger.application.mcpro.mini.DrawMiniPanel
schrodinger.application.mcpro.modelsystemwizard.ModelSystem
schrodinger.application.mcpro.modelsystemwizard.ModelSystem.CtObj
schrodinger.application.mcpro.modelsystemwizard.ModelSystemPanel
schrodinger.application.mcpro.modelsystemwizard._ChopCap
schrodinger.application.mcpro.modelsystemwizard._DispOpt
schrodinger.application.mcpro.modelsystemwizard._FileSelection
schrodinger.application.mcpro.modelsystemwizard._Flex
schrodinger.application.mcpro.modelsystemwizard._Import
schrodinger.application.mcpro.modelsystemwizard._Monitor
schrodinger.application.mcpro.modelsystemwizard._Neut
schrodinger.application.mcpro.modelsystemwizard._SysSpec
schrodinger.application.mcpro.perturbations.PertID
schrodinger.application.mcpro.perturbations.PertReorder
schrodinger.application.mcpro.perturbations.Perturbations
schrodinger.application.mcpro.read_output.ImportSumfile
schrodinger.application.mcpro.residuetools.ResidueTools
schrodinger.application.mcpro.solvent.DrawSolventPanel
schrodinger.application.mcpro.writeinputs.WriteInputs
schrodinger.application.mcpro.zmat.Zmat
schrodinger.application.mcpro.zmat.ZmatAddAng
schrodinger.application.mcpro.zmat.ZmatAddBnd
schrodinger.application.mcpro.zmat.ZmatAddDih
schrodinger.application.mcpro.zmat.ZmatAtom
schrodinger.application.mcpro.zmat.ZmatBondAtomtypes
schrodinger.application.mcpro.zmat.ZmatDomDef
schrodinger.application.mcpro.zmat.ZmatGeoVar
schrodinger.application.mcpro.zmat.ZmatHarCons
schrodinger.application.mcpro.zmat.ZmatNonBond
schrodinger.application.mcpro.zmat.ZmatVarDih
schrodinger.application.mcpro.zmat.proteinHandler
schrodinger.application.moldescriptors.MolecularDescriptorsOptions
schrodinger.application.mopac.MopacCalculation
schrodinger.application.mopac.MopacCalculationError
schrodinger.application.mopac.MopacResults
schrodinger.application.phase.hypothesis.Hypothesis
schrodinger.application.phase.hypothesis._HypothesisFeature
schrodinger.application.prime.input.Prime
schrodinger.application.prime.primefix.FixForPrime
schrodinger.application.qsite.input.Cut
schrodinger.application.qsite.input.HydrogenCap
schrodinger.application.qsite.input.QMRegion
schrodinger.application.qsite.input.QSiteInput
schrodinger.application.qsite.input._GenDict
schrodinger.application.qsite.input._MopacDict
schrodinger.application.qsite.output.QSiteOutput
schrodinger.application.qsite.output.QSiteResults
schrodinger.application.qsite.output.QSiteTextParser
schrodinger.application.report2d.Report2D
schrodinger.application.ska.SkaData
schrodinger.application.vsw.vswinput.VSWWriter
schrodinger.application.watermap.watermap_inp.WaterMapInput
schrodinger.graphics3d.arrow.Arrow
schrodinger.graphics3d.arrow.ArrowCore
schrodinger.graphics3d.arrow.MaestroArrow
schrodinger.graphics3d.box.Box
schrodinger.graphics3d.common.Group
schrodinger.graphics3d.common.Primitive
schrodinger.graphics3d.lines.Lines
schrodinger.graphics3d.polygon.Polygon
schrodinger.graphics3d.polyhedron.Cube
schrodinger.graphics3d.polyhedron.Dodecahedron
schrodinger.graphics3d.polyhedron.Icosahedron
schrodinger.graphics3d.polyhedron.Octahedron
schrodinger.graphics3d.polyhedron.Polyhedron
schrodinger.graphics3d.polyhedron.PolyhedronCore
schrodinger.graphics3d.polyhedron.Tetrahedron
schrodinger.graphics3d.quadrilateral.Quadrilateral
schrodinger.graphics3d.sphere.MaestroSphere
schrodinger.graphics3d.sphere.Sphere
schrodinger.graphics3d.sphere.SphereCore
schrodinger.infra.licensing.License
schrodinger.infra.licensing.LicensePtr
schrodinger.infra.mm.MmException
schrodinger.infra.mm.ReturnCode
schrodinger.infra.mm._CCodeProfiler
schrodinger.infra.mm._Wrapper
schrodinger.infra.mmbitset.Bitset
schrodinger.infra.mmerr.ErrorHandler
schrodinger.infra.mmim.MMIMArgList
schrodinger.infra.mmim.MMIMDict
schrodinger.infra.mminit.Initializer
schrodinger.infra.mmlist.mmlist
schrodinger.infra.mmobject.MmObject
schrodinger.infra.table.Table
schrodinger.infra.table.TableRow
schrodinger.infra.util.CreateWhenNeeded
schrodinger.job.app.App
schrodinger.job.hunt_cache.HuntCache
schrodinger.job.jobcontrol.Host
schrodinger.job.jobcontrol.Job
schrodinger.job.jobcontrol._Backend
schrodinger.job.jobcontrol._JobInitializer
schrodinger.job.jobcontrol._JobManager
schrodinger.job.jobcontrol._JobResourceHolder
schrodinger.job.launcher.Launcher
schrodinger.job.queue.BaseJob
schrodinger.job.queue.JobControlJob
schrodinger.job.queue.JobDJ
schrodinger.job.queue.LinkedList
schrodinger.job.queue.LinkedListNode
schrodinger.job.queue.LocalhostJob
schrodinger.job.queue.RequirementsJob
schrodinger.job.queue.RunningJobs
schrodinger.job.queue.SubprocessJob
schrodinger.job.queue.ThreadedJob
schrodinger.job.queue._MultiJobFinalizer
schrodinger.job.remote_command.CommandError
schrodinger.maestro.maestro.MaestroCommand
schrodinger.maestro.maestro._Callback
schrodinger.maestro.maestro.property_dict
schrodinger.pipeline.input.LinearWriter
schrodinger.pipeline.input.Writer
schrodinger.pipeline.pipeio.Grid
schrodinger.pipeline.pipeio.PhaseDB
schrodinger.pipeline.pipeio.PipeIO
schrodinger.pipeline.pipeio.Structures
schrodinger.pipeline.pipeio.Text
schrodinger.pipeline.pipeline.Pipeline
schrodinger.pipeline.pipeline.StageJob
schrodinger.pipeline.pipeutils.BackwardsReader
schrodinger.pipeline.pipeutils.DotPrinter
schrodinger.pipeline.stage.DotPrinter
schrodinger.pipeline.stage.Stage
schrodinger.pipeline.stage.StageInput
schrodinger.pipeline.stage.StageOutput
schrodinger.pipeline.stages.combine.CombineStage
schrodinger.pipeline.stages.combine.GenerateCovalentComplexesStage
schrodinger.pipeline.stages.convert.ConvertStage
schrodinger.pipeline.stages.filtering.ChargeFilterStage
schrodinger.pipeline.stages.filtering.DrugLikeSplitStage
schrodinger.pipeline.stages.filtering.GeneratePropsStage
schrodinger.pipeline.stages.filtering.LigFilterStage
schrodinger.pipeline.stages.filtering.MergeDuplicatesStage
schrodinger.pipeline.stages.filtering.SubSetStage
schrodinger.pipeline.stages.gencodes.GenCodesStage
schrodinger.pipeline.stages.gencodes.RestoreTitlesStage
schrodinger.pipeline.stages.glide.DockingStage
schrodinger.pipeline.stages.glide.GlideSortStage
schrodinger.pipeline.stages.glide.GridgenStage
schrodinger.pipeline.stages.glide.MergeStage
schrodinger.pipeline.stages.ligprep.LigPrepStage
schrodinger.pipeline.stages.ligprep.PostLigPrepStage
schrodinger.pipeline.stages.macromodel.ConfSearchStage
schrodinger.pipeline.stages.macromodel.SampleRingsStage
schrodinger.pipeline.stages.phase.DBConfSitesStage
schrodinger.pipeline.stages.phase.DBExportStage
schrodinger.pipeline.stages.phase.DBManageStage
schrodinger.pipeline.stages.prime.MMGBSAStage
schrodinger.pipeline.stages.prime.PrimeStage
schrodinger.pipeline.stages.pull.PullStage
schrodinger.pipeline.stages.qikprop.QikPropStage
schrodinger.pipeline.stages.qsite.QSiteStage
schrodinger.pipeline.stages.rmsd.RmsdStage
schrodinger.pipeline.stages.semiemp.SemiEmpStage
schrodinger.project.EmptyIterator
schrodinger.project.EntryGroup
schrodinger.project.EntrySurface
schrodinger.project.Project
schrodinger.project.ProjectRow
schrodinger.project.PropertyDictionary
schrodinger.project._AllRowsIterator
schrodinger.project._EntryGroupIterator
schrodinger.project._EntrySurfaceIterator
schrodinger.project._IncludedRowsIterator
schrodinger.project._SelectedRowsIterator
schrodinger.protein.analysis.Report
schrodinger.protein.analysis.Report.Bfactor_data_set
schrodinger.protein.analysis.Report.Gfactor_summary_data_set
schrodinger.protein.analysis.Report.backbone_dihedral_data_set
schrodinger.protein.analysis.Report.bond_angle_data_set
schrodinger.protein.analysis.Report.bond_length_data_set
schrodinger.protein.analysis.Report.chirality_data_set
schrodinger.protein.analysis.Report.data_set
schrodinger.protein.analysis.Report.data_set.data_point
schrodinger.protein.analysis.Report.gamma_Bfactor_data_set
schrodinger.protein.analysis.Report.improper_torsion_data_set
schrodinger.protein.analysis.Report.local_atom
schrodinger.protein.analysis.Report.local_protein
schrodinger.protein.analysis.Report.local_residue
schrodinger.protein.analysis.Report.missing_atoms_data_set
schrodinger.protein.analysis.Report.peptide_planarity_data_set
schrodinger.protein.analysis.Report.sidechain_dihedral_data_set
schrodinger.protein.analysis.Report.sidechain_planarity_data_set
schrodinger.protein.analysis.Report.steric_clash_data_set
schrodinger.protein.assignment.PropKaException
schrodinger.protein.assignment.ProtAssign
schrodinger.protein.assignment.ProtAssign.amide_changeable
schrodinger.protein.assignment.ProtAssign.amine_changeable
schrodinger.protein.assignment.ProtAssign.carboxyl_changeable
schrodinger.protein.assignment.ProtAssign.changeable
schrodinger.protein.assignment.ProtAssign.hbond_cluster
schrodinger.protein.assignment.ProtAssign.histidine_changeable
schrodinger.protein.assignment.ProtAssign.rotatable_changeable
schrodinger.protein.assignment.ProtAssign.water_changeable
schrodinger.protein.captermini.CapTermini
schrodinger.protein.findhets.AddNeighborGroups
schrodinger.protein.findhets.GroupByConnectivity
schrodinger.protein.membrane.Membrane_Model
schrodinger.protein.rotamers.Rotamers
schrodinger.protein.rotamers._Rotamer
schrodinger.protein.rotamers._RotamerIterator
schrodinger.protein.sequence.Sequence
schrodinger.structure.FormatReader
schrodinger.structure.MaestroReader
schrodinger.structure.MaestroReaderWithPositions
schrodinger.structure.MaestroTextReader
schrodinger.structure.MaestroWriter
schrodinger.structure.Mol2Reader
schrodinger.structure.Mol2Writer
schrodinger.structure.OptionError
schrodinger.structure.PDBReader
schrodinger.structure.PDBWriter
schrodinger.structure.PropertyName
schrodinger.structure.SDReader
schrodinger.structure.SDWriter
schrodinger.structure.SmilesCsvReader
schrodinger.structure.SmilesCsvWriter
schrodinger.structure.SmilesReader
schrodinger.structure.SmilesStructure
schrodinger.structure.SmilesWriter
schrodinger.structure.Structure
schrodinger.structure.StructureReader
schrodinger.structure.StructureWriter
schrodinger.structure.TextualStructure
schrodinger.structure.UnsupportedOption
schrodinger.structure.UnsupportedOptionValue
schrodinger.structure._AtomBondContainer
schrodinger.structure._AtomIterator
schrodinger.structure._BaseWriter
schrodinger.structure._Chain
schrodinger.structure._Molecule
schrodinger.structure._Residue
schrodinger.structure._ResidueIterator
schrodinger.structure._Ring
schrodinger.structure._RingEdgeIterator
schrodinger.structure._StructureAtom
schrodinger.structure._StructureAtomContainer
schrodinger.structure._StructureAtomProperty
schrodinger.structure._StructureBond
schrodinger.structure._StructureBondContainer
schrodinger.structure._StructureBondProperty
schrodinger.structure._StructureChainIterator
schrodinger.structure._StructureDeleter
schrodinger.structure._StructureManager
schrodinger.structure._StructureMoleculeIterator
schrodinger.structure._StructureProperty
schrodinger.structure._StructureRingIterator
schrodinger.structutils.analyze.AslLigandSearcher
schrodinger.structutils.analyze.Ligand
schrodinger.structutils.assignbondorders.AssignBondOrders
schrodinger.structutils.color.Color
schrodinger.structutils.color.ColorScheme
schrodinger.structutils.interactionfp.StructuralInteractionFingerprintGenerator
schrodinger.structutils.interactions.CationPiInteraction
schrodinger.structutils.interactions.Centroid
schrodinger.structutils.interactions.PiPiInteraction
schrodinger.structutils.io.MultiFileReader
schrodinger.structutils.io.MultiFileWriter
schrodinger.structutils.measure._DistanceCell
schrodinger.structutils.minimize.Minimizer
schrodinger.structutils.rmsd.ConformerRmsd
schrodinger.structutils.rmsd.ConformerRmsdX
schrodinger.structutils.sitealign.BindingSiteAligner
schrodinger.structutils.sitealign.SiteMatchLookup
schrodinger.structutils.smiles.SmilesGenerator
schrodinger.structutils.smilesfilter.FilterReporter
schrodinger.structutils.smilesfilter.SmilesErrorHandler
schrodinger.structutils.sort.DsuList
schrodinger.structutils.sort.StructureFileSorter
schrodinger.structutils.structalign.StructAlign
schrodinger.trajectory.analysis.Angle
schrodinger.trajectory.analysis.AverageStructure
schrodinger.trajectory.analysis.CenterOfMass
schrodinger.trajectory.analysis.CenterOfMotion
schrodinger.trajectory.analysis.CovarianceMatrix
schrodinger.trajectory.analysis.Dihedral
schrodinger.trajectory.analysis.Distance
schrodinger.trajectory.analysis.Grid3D
schrodinger.trajectory.analysis.HydrogenBondFinder
schrodinger.trajectory.analysis.HydrogenBondTracker
schrodinger.trajectory.analysis.PlanarAngle
schrodinger.trajectory.analysis.Position
schrodinger.trajectory.analysis.RMSD
schrodinger.trajectory.analysis.RMSF
schrodinger.trajectory.analysis.RadiusOfGyration
schrodinger.trajectory.analysis.Ramachandran
schrodinger.trajectory.analysis.SecondaryStructure
schrodinger.trajectory.analysis.Superimposer
schrodinger.trajectory.analysis.VolumeMapper
schrodinger.trajectory.analysis._PBCMeasureMananger
schrodinger.trajectory.analysis._RamachandranCallback
schrodinger.trajectory.analysistool.AnalysisTool
schrodinger.trajectory.analyze_trajectories._KeywordProcessor
schrodinger.trajectory.atomselection.FrameAslSelection
schrodinger.trajectory.atomselection.FrameIndexSelection
schrodinger.trajectory.atomselection.FrameSliceSelection
schrodinger.trajectory.atomselection._AtomSelection
schrodinger.trajectory.cmsstructure.CmsStructure
schrodinger.trajectory.desmondsimulation.DesmondSimulation
schrodinger.trajectory.desmondsimulation.FepSimulation
schrodinger.trajectory.desmondsimulation._DesmondFrame
schrodinger.trajectory.desmondsimulation._FepTrajectory
schrodinger.trajectory.desmondsimulation._FepTrajectory._FepFrame
schrodinger.trajectory.ffstructure.FFStructure
schrodinger.trajectory.ffstructure._FFAngle
schrodinger.trajectory.ffstructure._FFAngleIterator
schrodinger.trajectory.ffstructure._FFAngleProperty
schrodinger.trajectory.ffstructure._FFBond
schrodinger.trajectory.ffstructure._FFBondIterator
schrodinger.trajectory.ffstructure._FFBondProperty
schrodinger.trajectory.ffstructure._FFConstraint
schrodinger.trajectory.ffstructure._FFConstraintIterator
schrodinger.trajectory.ffstructure._FFConstraintProperty
schrodinger.trajectory.ffstructure._FFDihedral
schrodinger.trajectory.ffstructure._FFDihedralIterator
schrodinger.trajectory.ffstructure._FFDihedralProperty
schrodinger.trajectory.ffstructure._FFExclusion
schrodinger.trajectory.ffstructure._FFExclusionIterator
schrodinger.trajectory.ffstructure._FFExclusionProperty
schrodinger.trajectory.ffstructure._FFPair
schrodinger.trajectory.ffstructure._FFPairIterator
schrodinger.trajectory.ffstructure._FFPairProperty
schrodinger.trajectory.ffstructure._FFPseudo
schrodinger.trajectory.ffstructure._FFPseudoIterator
schrodinger.trajectory.ffstructure._FFPseudoProperty
schrodinger.trajectory.ffstructure._FFRestraint
schrodinger.trajectory.ffstructure._FFRestraintIterator
schrodinger.trajectory.ffstructure._FFRestraintProperty
schrodinger.trajectory.ffstructure._FFSite
schrodinger.trajectory.ffstructure._FFSiteIterator
schrodinger.trajectory.ffstructure._FFSiteProperty
schrodinger.trajectory.ffstructure._FFVdwtype
schrodinger.trajectory.ffstructure._FFVdwtypeIterator
schrodinger.trajectory.ffstructure._FFVdwtypeProperty
schrodinger.trajectory.ffstructure._FFVirtual
schrodinger.trajectory.ffstructure._FFVirtualIterator
schrodinger.trajectory.ffstructure._FFVirtualProperty
schrodinger.trajectory.rmsd2d.FrameLoader
schrodinger.trajectory.rmsd2d.ModelBase
schrodinger.trajectory.rmsd2d.MultiprocessingModel
schrodinger.trajectory.rmsd2d.RMSDCalculator
schrodinger.trajectory.rmsd2d.RMSDMultiprocessing
schrodinger.trajectory.rmsd2d.RMSDThreading
schrodinger.trajectory.rmsd2d.ThreadingModel
schrodinger.ui.appframework.AppFramework
schrodinger.ui.appframework.AppJobInputFrame
schrodinger.ui.appframework.DialogParameters
schrodinger.ui.appframework.JobInputFrame
schrodinger.ui.appframework.JobInputParams
schrodinger.ui.appframework.JobParameters
schrodinger.ui.appframework.MultiInputFrame
schrodinger.ui.appframework.MultiInputParams
schrodinger.ui.appframework.ReadDialog
schrodinger.ui.appframework.StartDialog
schrodinger.ui.appframework.StartDialogParams
schrodinger.ui.appframework.WriteDialog
schrodinger.ui.chooseligand.ChooseLigandDialog
schrodinger.ui.chooseligand.ChooseLigandModel
schrodinger.ui.chooseligand.TestApp
schrodinger.ui.ligfilter.AddDefinitionDialog
schrodinger.ui.ligfilter.CriteriaListModel
schrodinger.ui.ligfilter.DefinitionViewerDialog
schrodinger.ui.ligfilter.LigfilterFrame
schrodinger.ui.ligfilter.PatternModel
schrodinger.ui.ligfilter_definition_dialog_ui.Ui_Dialog
schrodinger.ui.ligfilter_ui.Ui_Form
schrodinger.ui.macromodel.AsetFrame
schrodinger.ui.macromodel.LoopFrame
schrodinger.ui.macromodel.MiniFrame
schrodinger.ui.macromodel.PotentialFrame
schrodinger.ui.macromodel.SbcFrame
schrodinger.ui.multilistbox.MultiListbox
schrodinger.ui.picking.PickAtomToggle
schrodinger.ui.picking.PickBondToggle
schrodinger.ui.picking._PickToggle
schrodinger.ui.propertyselector.PropertySelector
schrodinger.ui.propertyselector.PropertySelectorMenu
schrodinger.ui.qt.appframework.AppFramework
schrodinger.ui.qt.appframework.CustomProgressBar
schrodinger.ui.qt.appframework.DialogParameters
schrodinger.ui.qt.appframework.JobInputFrame
schrodinger.ui.qt.appframework.JobInputParams
schrodinger.ui.qt.appframework.JobParameters
schrodinger.ui.qt.appframework.ReadDialog
schrodinger.ui.qt.appframework.StartDialog
schrodinger.ui.qt.appframework.StartDialogParams
schrodinger.ui.qt.appframework.TestApp
schrodinger.ui.qt.appframework.WriteDialog
schrodinger.ui.qt.appframework._EntryField
schrodinger.ui.qt.filedialog.FileDialog
schrodinger.ui.qt.filedialog.PhaseDatabaseIconProvider
schrodinger.ui.qt.filedialog.PhaseDatabaseOpenDialog
schrodinger.ui.qt.filedialog.ProjectOpenDialog
schrodinger.ui.qt.filedialog._CustomIconProvider
schrodinger.ui.qt.rama.Rama.backbone_dihedral
schrodinger.ui.rama.Rama
schrodinger.ui.rama.Rama.backbone_dihedral
schrodinger.ui.sketcher.sketcher
schrodinger.ui.sketcher.sketcherGUIMultiColumnToolBar
schrodinger.ui.sketcher.sketcherView
schrodinger.ui.widget.pmwwidget.Balloon
schrodinger.ui.widget.pmwwidget.ButtonBox
schrodinger.ui.widget.pmwwidget.ComboBox
schrodinger.ui.widget.pmwwidget.Counter
schrodinger.ui.widget.pmwwidget.Dialog
schrodinger.ui.widget.pmwwidget.EntryField
schrodinger.ui.widget.pmwwidget.Group
schrodinger.ui.widget.pmwwidget.MainMenuBar
schrodinger.ui.widget.pmwwidget.MessageDialog
schrodinger.ui.widget.pmwwidget.NoteBook
schrodinger.ui.widget.pmwwidget.OptionMenu
schrodinger.ui.widget.pmwwidget.PanedWidget
schrodinger.ui.widget.pmwwidget.PromptDialog
schrodinger.ui.widget.pmwwidget.RadioSelect
schrodinger.ui.widget.pmwwidget.ScrolledCanvas
schrodinger.ui.widget.pmwwidget.ScrolledFrame
schrodinger.ui.widget.pmwwidget.ScrolledListBox
schrodinger.ui.widget.pmwwidget.ScrolledText
schrodinger.ui.widget.pmwwidget.schroPmwWrapper
schrodinger.ui.widget.pmwwidget.showinfo
schrodinger.ui.widget.pmwwidget.showwarning
schrodinger.ui.widget.tkinterwidget.BooleanVar
schrodinger.ui.widget.tkinterwidget.Button
schrodinger.ui.widget.tkinterwidget.Canvas
schrodinger.ui.widget.tkinterwidget.Checkbutton
schrodinger.ui.widget.tkinterwidget.DoubleVar
schrodinger.ui.widget.tkinterwidget.Entry
schrodinger.ui.widget.tkinterwidget.Frame
schrodinger.ui.widget.tkinterwidget.GroundClass
schrodinger.ui.widget.tkinterwidget.HorizontalBar
schrodinger.ui.widget.tkinterwidget.IntVar
schrodinger.ui.widget.tkinterwidget.Label
schrodinger.ui.widget.tkinterwidget.LabelFrame
schrodinger.ui.widget.tkinterwidget.Listbox
schrodinger.ui.widget.tkinterwidget.Menu
schrodinger.ui.widget.tkinterwidget.Menubutton
schrodinger.ui.widget.tkinterwidget.Message
schrodinger.ui.widget.tkinterwidget.NoteBookButton
schrodinger.ui.widget.tkinterwidget.PanedWindow
schrodinger.ui.widget.tkinterwidget.PhotoImage
schrodinger.ui.widget.tkinterwidget.PickAtomToggle
schrodinger.ui.widget.tkinterwidget.PickBondToggle
schrodinger.ui.widget.tkinterwidget.PickToggle
schrodinger.ui.widget.tkinterwidget.Radiobutton
schrodinger.ui.widget.tkinterwidget.Scale
schrodinger.ui.widget.tkinterwidget.Scrollbar
schrodinger.ui.widget.tkinterwidget.Spinbox
schrodinger.ui.widget.tkinterwidget.StringVar
schrodinger.ui.widget.tkinterwidget.TableEntry
schrodinger.ui.widget.tkinterwidget.Text
schrodinger.ui.widget.tkinterwidget.Tk
schrodinger.ui.widget.tkinterwidget.Toplevel
schrodinger.ui.widget.tkinterwidget.schroWidget
schrodinger.ui.widgettable.ButtonCell
schrodinger.ui.widgettable.ButtonColumn
schrodinger.ui.widgettable.CanvasCell
schrodinger.ui.widgettable.CanvasColumn
schrodinger.ui.widgettable.CellIterator
schrodinger.ui.widgettable.CheckbuttonCell
schrodinger.ui.widgettable.CheckbuttonColumn
schrodinger.ui.widgettable.ColumnIterator
schrodinger.ui.widgettable.EntryFieldCell
schrodinger.ui.widgettable.EntryFieldColumn
schrodinger.ui.widgettable.LabelCell
schrodinger.ui.widgettable.LabelColumn
schrodinger.ui.widgettable.OptionMenuCell
schrodinger.ui.widgettable.OptionMenuColumn
schrodinger.ui.widgettable.RadiobuttonCell
schrodinger.ui.widgettable.RadiobuttonColumn
schrodinger.ui.widgettable.RowIterator
schrodinger.ui.widgettable.WidgetTable
schrodinger.ui.widgettable._Cell
schrodinger.ui.widgettable._Column
schrodinger.ui.widgettable._Row
schrodinger.ui.widgettable._ScrolledDouble
schrodinger.utils.cmdline.DelegatingIndentedHelpFormatter
schrodinger.utils.cmdline.SingleDashOption
schrodinger.utils.cmdline.SingleDashOptionParser
schrodinger.utils.ligfilter.AslCriterion
schrodinger.utils.ligfilter.Criterion
schrodinger.utils.ligfilter.CriterionParser
schrodinger.utils.ligfilter.Definition
schrodinger.utils.ligfilter.DefinitionParser
schrodinger.utils.ligfilter.PredefinedCriterion
schrodinger.utils.ligfilter.PropertyCriterion
schrodinger.utils.ligfilter.SmartsCriterion
schrodinger.utils.ligfilter._MySplit
schrodinger.utils.moduleproxy.ModuleProxy
schrodinger.utils.preferences.Preferences
schrodinger.utils.sea.Atom
schrodinger.utils.sea.Key
schrodinger.utils.sea.List
schrodinger.utils.sea.Map
schrodinger.utils.sea.Sea
schrodinger.utils.sea._Evalor
schrodinger.utils.timers.IncrementalTimer
schrodinger.utils.urllib.HTTPSHandler
schrodinger.utils.urllib.MyHTTPHandler
schrodinger.utils.urllib.MyHTTPSHandler
schrodinger.utils.urllib.PasswordRetryException
schrodinger.utils.urllib.ProxyBasicAuthHandler
schrodinger.utils.urllib.ProxyDigestAuthHandler
schrodinger.utils.urllib.ProxyHandler
schrodinger.utils.urllib.ProxyPasswordManager
schrodinger.utils.urllib.ProxyPasswordManagerQt
schrodinger.utils.urllib.ProxyTunnelError

All Functions

schrodinger.analysis.enrichment.get_parser
schrodinger.antibody_db_manage_gui.check_baseline_args
schrodinger.antibody_db_manage_gui.panel
schrodinger.antibody_db_manage_gui.trim_pathname
schrodinger.application.bioluminate.actions.factory.get_action_obj_name
schrodinger.application.bioluminate.actions.factory.replace_slot
schrodinger.application.bioluminate.antibody.utils.get_active_databases
schrodinger.application.bioluminate.antibody.utils.get_all_databases
schrodinger.application.bioluminate.antibody.utils.get_bio_database
schrodinger.application.bioluminate.antibody.utils.get_databases
schrodinger.application.bioluminate.antibody.utils.open_databases
schrodinger.application.bioluminate.antibody.utils.search_antibody
schrodinger.application.bioluminate.antibody.utils.set_active_databases
schrodinger.application.bioluminate.antibody.utils.set_all_databases
schrodinger.application.bioluminate.antibody_utils.search_antibody
schrodinger.application.bioluminate.pml_menus._color_key
schrodinger.application.bioluminate.pml_menus._do_rocking
schrodinger.application.bioluminate.pml_menus._rocker_recall
schrodinger.application.bioluminate.pml_menus.add_common_context_items
schrodinger.application.bioluminate.pml_menus.atom_b_factor
schrodinger.application.bioluminate.pml_menus.bin_b_factors
schrodinger.application.bioluminate.pml_menus.clear_labels
schrodinger.application.bioluminate.pml_menus.color_atoms
schrodinger.application.bioluminate.pml_menus.color_atoms_rgb
schrodinger.application.bioluminate.pml_menus.color_by_element
schrodinger.application.bioluminate.pml_menus.color_chainbow_groups
schrodinger.application.bioluminate.pml_menus.create_action_menu
schrodinger.application.bioluminate.pml_menus.create_colorbyele_menu
schrodinger.application.bioluminate.pml_menus.create_hide_menu
schrodinger.application.bioluminate.pml_menus.create_label_menu
schrodinger.application.bioluminate.pml_menus.create_modify_menu
schrodinger.application.bioluminate.pml_menus.create_show_menu
schrodinger.application.bioluminate.pml_menus.create_show_organic_menu
schrodinger.application.bioluminate.pml_menus.create_show_substructure_menu
schrodinger.application.bioluminate.pml_menus.create_surface
schrodinger.application.bioluminate.pml_menus.display_atoms
schrodinger.application.bioluminate.pml_menus.display_atoms_as
schrodinger.application.bioluminate.pml_menus.display_image
schrodinger.application.bioluminate.pml_menus.display_ribbons
schrodinger.application.bioluminate.pml_menus.end_progress
schrodinger.application.bioluminate.pml_menus.ensure_proper_extension
schrodinger.application.bioluminate.pml_menus.find_all_entries
schrodinger.application.bioluminate.pml_menus.find_center_of_atoms
schrodinger.application.bioluminate.pml_menus.find_polar_contacts
schrodinger.application.bioluminate.pml_menus.get_asl_chain_name
schrodinger.application.bioluminate.pml_menus.get_color
schrodinger.application.bioluminate.pml_menus.get_matching_ws_atoms
schrodinger.application.bioluminate.pml_menus.get_matching_ws_entries
schrodinger.application.bioluminate.pml_menus.get_surfaces
schrodinger.application.bioluminate.pml_menus.get_visible_ws_asl
schrodinger.application.bioluminate.pml_menus.get_visible_ws_atoms
schrodinger.application.bioluminate.pml_menus.hide_atoms
schrodinger.application.bioluminate.pml_menus.hide_everything
schrodinger.application.bioluminate.pml_menus.hide_labels
schrodinger.application.bioluminate.pml_menus.hide_ribbons
schrodinger.application.bioluminate.pml_menus.hide_surface
schrodinger.application.bioluminate.pml_menus.join_asls
schrodinger.application.bioluminate.pml_menus.maestro_command
schrodinger.application.bioluminate.pml_menus.make_color_asl_for_element
schrodinger.application.bioluminate.pml_menus.mod_asl
schrodinger.application.bioluminate.pml_menus.restore_cursor
schrodinger.application.bioluminate.pml_menus.rock_workspace
schrodinger.application.bioluminate.pml_menus.save_new_color
schrodinger.application.bioluminate.pml_menus.set_wait_cursor
schrodinger.application.bioluminate.pml_menus.show_result
schrodinger.application.bioluminate.pml_menus.start_progress
schrodinger.application.bioluminate.pml_menus.stop_rocking
schrodinger.application.bioluminate.pml_menus.update_progress
schrodinger.application.bioluminate.propfilter_ui._fromUtf8
schrodinger.application.bioluminate.protein.atom_is_nonpolar
schrodinger.application.bioluminate.protein.get_residue_asl
schrodinger.application.bioluminate.protein.get_residues_asl
schrodinger.application.bioluminate.protein.get_residues_within
schrodinger.application.bioluminate.protein.residue_is_nonpolar
schrodinger.application.bioluminate.protein.residue_is_polar
schrodinger.application.bioluminate.protein.schrodinger_run
schrodinger.application.bioluminate.protein.valid_asl
schrodinger.application.bioluminate.protein_report_widget.panel
schrodinger.application.bioluminate.protein_report_widget.quit
schrodinger.application.bioluminate.protein_structure_quality.maestro_command
schrodinger.application.bioluminate.protein_structure_quality_ui._fromUtf8
schrodinger.application.bioluminate.sliderchart.prevent_overlapping_x_labels
schrodinger.application.bioluminate.ssv.viewer.catch_last_added
schrodinger.application.canvas.cluster.mktemp
schrodinger.application.canvas.clustergui._add_cluster_statistics
schrodinger.application.canvas.driverutils.gen_range_specification
schrodinger.application.canvas.driverutils.get_driver_option_parser
schrodinger.application.canvas.driverutils.get_excluded_columns
schrodinger.application.canvas.driverutils.get_range_specification
schrodinger.application.canvas.driverutils.open_csv
schrodinger.application.canvas.driverutils.open_multiy_csv
schrodinger.application.canvas.driverutils.option_float_varargs_callback
schrodinger.application.canvas.driverutils.option_string_varargs_callback
schrodinger.application.canvas.driverutils.print_report
schrodinger.application.canvas.utils.get_license
schrodinger.application.combiglide.corehop._convert_blob_to_int_array
schrodinger.application.combiglide.utils.get_spec_dict
schrodinger.application.desmond.ana.calc_prob_profile
schrodinger.application.desmond.ana.calc_time_series
schrodinger.application.desmond.antlr3.dottreegen.toDOT
schrodinger.application.desmond.antlr3.extras.toDOT
schrodinger.application.desmond.antlr3.treewizard.computeTokenTypes
schrodinger.application.desmond.antlr3.version_str_to_tuple
schrodinger.application.desmond.autopartition._array2list
schrodinger.application.desmond.autopartition._list2array
schrodinger.application.desmond.autopartition._multicomb
schrodinger.application.desmond.autopartition._next_multiset_comb
schrodinger.application.desmond.autopartition.all_multicomb
schrodinger.application.desmond.autopartition.auto_partition
schrodinger.application.desmond.autopartition.get_next_partition
schrodinger.application.desmond.autopartition.get_prime_factors
schrodinger.application.desmond.autopartition.next_prime
schrodinger.application.desmond.cmj._collect_inputfile_from_file_list
schrodinger.application.desmond.cmj._collect_inputfile_from_file_map
schrodinger.application.desmond.cmj._collect_inputfile_from_list
schrodinger.application.desmond.cmj._collect_inputfile_from_map
schrodinger.application.desmond.cmj._print
schrodinger.application.desmond.cmj.append_stage
schrodinger.application.desmond.cmj.build_stagelinks
schrodinger.application.desmond.cmj.build_stages
schrodinger.application.desmond.cmj.collect_inputfile
schrodinger.application.desmond.cmj.escape_string
schrodinger.application.desmond.cmj.is_restartable_version
schrodinger.application.desmond.cmj.msj2sea
schrodinger.application.desmond.cmj.msj2sea_full
schrodinger.application.desmond.cmj.parse_msj
schrodinger.application.desmond.cmj.print_debug
schrodinger.application.desmond.cmj.print_quiet
schrodinger.application.desmond.cmj.print_silent
schrodinger.application.desmond.cmj.print_tonull
schrodinger.application.desmond.cmj.print_verbose
schrodinger.application.desmond.cmj.probe_checkpoint
schrodinger.application.desmond.cmj.reg_checking
schrodinger.application.desmond.cmj.validate_asl_expr
schrodinger.application.desmond.cmj.write_msj
schrodinger.application.desmond.cmj.write_sea2msj
schrodinger.application.desmond.cms._aslselect_atom
schrodinger.application.desmond.cms._get_gluepoints_impl
schrodinger.application.desmond.cms._get_gluepoints_impl_old
schrodinger.application.desmond.cms._sort_posre_helper
schrodinger.application.desmond.cms.aslselect_atom
schrodinger.application.desmond.cms.calc_average_vdw_coeff
schrodinger.application.desmond.cms.check_sanity
schrodinger.application.desmond.cms.combine_vdw
schrodinger.application.desmond.cms.crossprod
schrodinger.application.desmond.cms.decomp_rawfep_structure
schrodinger.application.desmond.cms.dotprod
schrodinger.application.desmond.cms.find_next_residue
schrodinger.application.desmond.cms.find_prev_residue
schrodinger.application.desmond.cms.gen_alpha_helix_restraint
schrodinger.application.desmond.cms.get_box
schrodinger.application.desmond.cms.get_boxsize
schrodinger.application.desmond.cms.get_boxvolume
schrodinger.application.desmond.cms.get_gluepoints
schrodinger.application.desmond.cms.get_model_system_type
schrodinger.application.desmond.cms.has_fepio
schrodinger.application.desmond.cms.has_ffio
schrodinger.application.desmond.cms.inject_restr
schrodinger.application.desmond.cms.mark_fullsystem_ct
schrodinger.application.desmond.cms.merge_relative_restraint
schrodinger.application.desmond.cms.norm
schrodinger.application.desmond.cms.sort_posre
schrodinger.application.desmond.cms.test_clear_restrain
schrodinger.application.desmond.cms.test_gen_alpha_helix_restraint
schrodinger.application.desmond.cms.test_get_alpha_helix_restraint
schrodinger.application.desmond.cms.test_get_degrees_of_freedom
schrodinger.application.desmond.cms.test_get_gluepoints
schrodinger.application.desmond.cms.test_get_num_constraint
schrodinger.application.desmond.cms.test_get_relative_restraint
schrodinger.application.desmond.config.__attach_msj
schrodinger.application.desmond.config.__calc_bonded_lambda
schrodinger.application.desmond.config.__calc_charge_lambda
schrodinger.application.desmond.config.__calc_vdw_lambda
schrodinger.application.desmond.config.__canonicalize_coulomb_method
schrodinger.application.desmond.config.__canonicalize_ensemble
schrodinger.application.desmond.config.__canonicalize_fep
schrodinger.application.desmond.config.__canonicalize_pressure
schrodinger.application.desmond.config.__canonicalize_temperature
schrodinger.application.desmond.config.__clean_cfg
schrodinger.application.desmond.config.__fix_cfg
schrodinger.application.desmond.config.__get_fep_schedule
schrodinger.application.desmond.config.__msj2cfg_helper
schrodinger.application.desmond.config.__optimize_cfg
schrodinger.application.desmond.config.__set_annealing
schrodinger.application.desmond.config.__set_backend
schrodinger.application.desmond.config.__set_checkpt
schrodinger.application.desmond.config.__set_convergence
schrodinger.application.desmond.config.__set_coulomb_method
schrodinger.application.desmond.config.__set_cpu
schrodinger.application.desmond.config.__set_cutoff_radius
schrodinger.application.desmond.config.__set_elapsed_time
schrodinger.application.desmond.config.__set_energy_group
schrodinger.application.desmond.config.__set_eneseq
schrodinger.application.desmond.config.__set_ensemble
schrodinger.application.desmond.config.__set_fep
schrodinger.application.desmond.config.__set_glue
schrodinger.application.desmond.config.__set_maeff_output
schrodinger.application.desmond.config.__set_max_steps
schrodinger.application.desmond.config.__set_meta
schrodinger.application.desmond.config.__set_model_file
schrodinger.application.desmond.config.__set_num_vector
schrodinger.application.desmond.config.__set_pressure
schrodinger.application.desmond.config.__set_randomize_velocity
schrodinger.application.desmond.config.__set_replica
schrodinger.application.desmond.config.__set_simbox
schrodinger.application.desmond.config.__set_steepest_descent_steps
schrodinger.application.desmond.config.__set_surface_tension
schrodinger.application.desmond.config.__set_taper
schrodinger.application.desmond.config.__set_temperature
schrodinger.application.desmond.config.__set_time
schrodinger.application.desmond.config.__set_timestep
schrodinger.application.desmond.config.__set_trajectory
schrodinger.application.desmond.config.__set_vrun_frameset
schrodinger.application.desmond.config._xchk_check_annealing
schrodinger.application.desmond.config._xchk_check_iwindow
schrodinger.application.desmond.config._xchk_check_lambda
schrodinger.application.desmond.config._xchk_check_remd_temp_generator
schrodinger.application.desmond.config._xchk_check_remd_temp_generator2
schrodinger.application.desmond.config.add_plugin
schrodinger.application.desmond.config.canonicalize
schrodinger.application.desmond.config.extract_cfg
schrodinger.application.desmond.config.gen_replica
schrodinger.application.desmond.config.gen_temperature_for_solute_tempering
schrodinger.application.desmond.config.get_default_setting
schrodinger.application.desmond.config.get_energy_group_output_filename
schrodinger.application.desmond.config.get_ensemble_class_method
schrodinger.application.desmond.config.get_exec
schrodinger.application.desmond.config.get_exec_name
schrodinger.application.desmond.config.get_fep_lambda_schedule
schrodinger.application.desmond.config.get_fep_output_filename
schrodinger.application.desmond.config.get_homebox
schrodinger.application.desmond.config.get_replica_setting
schrodinger.application.desmond.config.get_simbox_output_filename
schrodinger.application.desmond.config.has_plugin
schrodinger.application.desmond.config.is_meta
schrodinger.application.desmond.config.is_minimize
schrodinger.application.desmond.config.is_remd
schrodinger.application.desmond.config.is_triclinic_box
schrodinger.application.desmond.config.is_vrun
schrodinger.application.desmond.config.lambda_type
schrodinger.application.desmond.config.msj2cfg
schrodinger.application.desmond.config.num_cpu
schrodinger.application.desmond.config.num_lambda_window
schrodinger.application.desmond.config.num_replica
schrodinger.application.desmond.config.optimize_key
schrodinger.application.desmond.config.parse_lambda
schrodinger.application.desmond.config.remove_plugin
schrodinger.application.desmond.config.tag_md
schrodinger.application.desmond.config.tag_meta
schrodinger.application.desmond.config.tag_minimize
schrodinger.application.desmond.config.tag_remd
schrodinger.application.desmond.config.tag_vrun
schrodinger.application.desmond.cwidget._get_hosts
schrodinger.application.desmond.cwidget._strip_procs
schrodinger.application.desmond.destro.setglobalprecision
schrodinger.application.desmond.enhanced_sampling.FcnTypes.getFcnSigs
schrodinger.application.desmond.enhanced_sampling.FcnTypes.showtype
schrodinger.application.desmond.enhanced_sampling.mexpLexer.main
schrodinger.application.desmond.enhanced_sampling.mexpParser.main
schrodinger.application.desmond.enhsamp.bodyToNode
schrodinger.application.desmond.enhsamp.headerToEnv
schrodinger.application.desmond.enhsamp.parseStr
schrodinger.application.desmond.enhsamp.parse_indices
schrodinger.application.desmond.enhsamp.parse_mexpr
schrodinger.application.desmond.enhsamp.procText
schrodinger.application.desmond.enhsamp.resolve_atomsel
schrodinger.application.desmond.enhsamp.showtype
schrodinger.application.desmond.envir._get_dir
schrodinger.application.desmond.envir._get_version
schrodinger.application.desmond.envir.get
schrodinger.application.desmond.fep_gui.debug
schrodinger.application.desmond.fepana._get_pathway_helper
schrodinger.application.desmond.fepana.calc_contrib
schrodinger.application.desmond.fepana.calc_convergence_rate
schrodinger.application.desmond.fepana.calc_forward_reversed_work_overlap
schrodinger.application.desmond.fepana.calc_free_energy_for_abfe_cross_link
schrodinger.application.desmond.fepana.calc_free_energy_for_abfe_cross_link_xu
schrodinger.application.desmond.fepana.calc_freeenergy_rtime_function
schrodinger.application.desmond.fepana.calc_freeenergy_stime_function
schrodinger.application.desmond.fepana.calc_freeenergy_time_function
schrodinger.application.desmond.fepana.calc_lambda_sim_matrix
schrodinger.application.desmond.fepana.calc_lambda_window_overlap
schrodinger.application.desmond.fepana.calc_long_range_dispersion_energy
schrodinger.application.desmond.fepana.calc_rmsd
schrodinger.application.desmond.fepana.calc_work_prob_distr
schrodinger.application.desmond.fepana.correct_restr
schrodinger.application.desmond.fepana.dE_correction_for_abfe_cross_link
schrodinger.application.desmond.fepana.get_abfep_cross_link
schrodinger.application.desmond.fepana.get_average_box_volume
schrodinger.application.desmond.fepana.get_average_dispersion_coefficient_from_log
schrodinger.application.desmond.fepana.get_cutoff_from_log
schrodinger.application.desmond.fepana.get_energy_table
schrodinger.application.desmond.fepana.get_global_quantity
schrodinger.application.desmond.fepana.get_mean
schrodinger.application.desmond.fepana.get_number_density_from_cms
schrodinger.application.desmond.fepana.get_pathway
schrodinger.application.desmond.fepana.long_range_dispersion_energy
schrodinger.application.desmond.fepana.parse_eneseq
schrodinger.application.desmond.fepana.plot_lambda_window_overlap
schrodinger.application.desmond.fepana.print_pathway
schrodinger.application.desmond.fepana.read_dE_file
schrodinger.application.desmond.fepana.run_bennett
schrodinger.application.desmond.fepana.violate_midpoint
schrodinger.application.desmond.ffiostructure.get_fepio_sub_block_std_prop_getter
schrodinger.application.desmond.ffiostructure.get_fepio_sub_block_std_prop_setter
schrodinger.application.desmond.ffiostructure.get_fepio_sub_block_std_prop_short_name
schrodinger.application.desmond.ffiostructure.get_ffio_sub_block_std_prop_getter
schrodinger.application.desmond.ffiostructure.get_ffio_sub_block_std_prop_setter
schrodinger.application.desmond.ffiostructure.get_ffio_sub_block_std_prop_short_name
schrodinger.application.desmond.ffiostructure.make_property
schrodinger.application.desmond.ffiostructure.make_property_fepio
schrodinger.application.desmond.ffiostructure.merge_ct
schrodinger.application.desmond.ffiostructure.write_cms
schrodinger.application.desmond.ffiostructure.write_cms_to_string
schrodinger.application.desmond.framesettools.isaFrameSetDirectory
schrodinger.application.desmond.gchart.compile_xy
schrodinger.application.desmond.gchart.encode_extended
schrodinger.application.desmond.gchart.encode_simple
schrodinger.application.desmond.gchart.get_xy_url
schrodinger.application.desmond.gchart.urlencode
schrodinger.application.desmond.generictrajectory.desmond_frame
schrodinger.application.desmond.gui.error_dialog
schrodinger.application.desmond.gui.warning_dialog
schrodinger.application.desmond.guide.__go_next
schrodinger.application.desmond.icon.get
schrodinger.application.desmond.maestro._draw_arrow_callback
schrodinger.application.desmond.maestro._run
schrodinger.application.desmond.maestro.autoprojectsync_call
schrodinger.application.desmond.maestro.begin_drawing
schrodinger.application.desmond.maestro.clean_drawing
schrodinger.application.desmond.maestro.depreference_call
schrodinger.application.desmond.maestro.draw_1_arrow
schrodinger.application.desmond.maestro.draw_arrow
schrodinger.application.desmond.maestro.duplicate_entry
schrodinger.application.desmond.maestro.end_drawing
schrodinger.application.desmond.maestro.get_entry_id
schrodinger.application.desmond.maestro.get_entryname_prefix
schrodinger.application.desmond.maestro.noautofit_call
schrodinger.application.desmond.maestro.nofitgrow_call
schrodinger.application.desmond.mdkey.__op_and
schrodinger.application.desmond.mdkey.__op_at
schrodinger.application.desmond.mdkey.__op_cat
schrodinger.application.desmond.mdkey.__op_eq
schrodinger.application.desmond.mdkey.__op_ge
schrodinger.application.desmond.mdkey.__op_gt
schrodinger.application.desmond.mdkey.__op_le
schrodinger.application.desmond.mdkey.__op_lt
schrodinger.application.desmond.mdkey.__op_minus
schrodinger.application.desmond.mdkey.__op_not
schrodinger.application.desmond.mdkey.__op_or
schrodinger.application.desmond.mdkey.__op_sizeof
schrodinger.application.desmond.mdkey._boolean
schrodinger.application.desmond.mdkey._calc_vdw_lambda
schrodinger.application.desmond.mdkey._check_atom
schrodinger.application.desmond.mdkey._check_list
schrodinger.application.desmond.mdkey._condense_atom_group
schrodinger.application.desmond.mdkey._debug_print
schrodinger.application.desmond.mdkey._default_group_selector
schrodinger.application.desmond.mdkey._eval
schrodinger.application.desmond.mdkey._is_equal
schrodinger.application.desmond.mdkey._match
schrodinger.application.desmond.mdkey._parent_dir
schrodinger.application.desmond.mdkey._restr_grp_selector
schrodinger.application.desmond.mdkey._update_key_with_file
schrodinger.application.desmond.mdkey._xchk_dir_exists
schrodinger.application.desmond.mdkey._xchk_file_exists
schrodinger.application.desmond.mdkey._xchk_power2
schrodinger.application.desmond.mdkey.add_plugin
schrodinger.application.desmond.mdkey.check_key
schrodinger.application.desmond.mdkey.check_key2
schrodinger.application.desmond.mdkey.clean_struc
schrodinger.application.desmond.mdkey.compare_atom_group
schrodinger.application.desmond.mdkey.compare_restr_grp
schrodinger.application.desmond.mdkey.crossprod
schrodinger.application.desmond.mdkey.del_all_atom_grp
schrodinger.application.desmond.mdkey.diff
schrodinger.application.desmond.mdkey.dotprod
schrodinger.application.desmond.mdkey.extract_cfg
schrodinger.application.desmond.mdkey.fep_schedule
schrodinger.application.desmond.mdkey.gen_key
schrodinger.application.desmond.mdkey.get_asl
schrodinger.application.desmond.mdkey.get_atom_grp
schrodinger.application.desmond.mdkey.get_box
schrodinger.application.desmond.mdkey.get_boxsize
schrodinger.application.desmond.mdkey.get_boxvolume
schrodinger.application.desmond.mdkey.get_clone_xyz
schrodinger.application.desmond.mdkey.get_homebox
schrodinger.application.desmond.mdkey.get_model_system_type
schrodinger.application.desmond.mdkey.get_restr
schrodinger.application.desmond.mdkey.get_restr2
schrodinger.application.desmond.mdkey.has_fepio
schrodinger.application.desmond.mdkey.has_mmffio
schrodinger.application.desmond.mdkey.has_plugin
schrodinger.application.desmond.mdkey.inject_atom_grp
schrodinger.application.desmond.mdkey.inject_restr
schrodinger.application.desmond.mdkey.is_powerof2
schrodinger.application.desmond.mdkey.is_triclinic_box
schrodinger.application.desmond.mdkey.merge_restr2
schrodinger.application.desmond.mdkey.norm
schrodinger.application.desmond.mdkey.optimize_key
schrodinger.application.desmond.mdkey.prep_struc
schrodinger.application.desmond.mdkey.reg_xcheck
schrodinger.application.desmond.mdkey.remove_plugin
schrodinger.application.desmond.mdkey.resize_restr_block
schrodinger.application.desmond.mdkey.set_farterm
schrodinger.application.desmond.mdkey.set_restr
schrodinger.application.desmond.mdkey.set_restr2
schrodinger.application.desmond.mdkey.set_restr_block
schrodinger.application.desmond.measurement.__test
schrodinger.application.desmond.meta.generate_meta_cfg
schrodinger.application.desmond.meta.get_backend
schrodinger.application.desmond.meta.get_distance
schrodinger.application.desmond.meta.list2str
schrodinger.application.desmond.meta.parse_meta
schrodinger.application.desmond.meta.read_meta_cfg
schrodinger.application.desmond.mplchart._get_configdir
schrodinger.application.desmond.mplchart._get_home
schrodinger.application.desmond.mplchart._is_writable_dir
schrodinger.application.desmond.mplchart.create_contour_plot_on_figure
schrodinger.application.desmond.mplchart.create_mpl_plot_on_figure
schrodinger.application.desmond.mplchart.create_surface_on_figure
schrodinger.application.desmond.mplchart.get_2var_plot
schrodinger.application.desmond.mplchart.get_xy_plot
schrodinger.application.desmond.mplchart.get_xy_plot_widget
schrodinger.application.desmond.mplchart.prevent_overlapping_x_labels
schrodinger.application.desmond.mplchart.remove_temp_dir
schrodinger.application.desmond.periodicfix.apply
schrodinger.application.desmond.periodicfix.wrap
schrodinger.application.desmond.predict_remd_temp._get_degrees_of_freedom
schrodinger.application.desmond.predict_remd_temp._get_num_constraint
schrodinger.application.desmond.predict_remd_temp._get_num_nonwateratom
schrodinger.application.desmond.predict_remd_temp._get_num_wateratom
schrodinger.application.desmond.predict_remd_temp._is_water
schrodinger.application.desmond.predict_remd_temp._set_freezing_atommass
schrodinger.application.desmond.predict_remd_temp._split_ct
schrodinger.application.desmond.predict_remd_temp.freeze_atoms
schrodinger.application.desmond.predict_remd_temp.predict_temperature
schrodinger.application.desmond.remd.freeze_atom
schrodinger.application.desmond.remd.get_degrees_of_freedom
schrodinger.application.desmond.remd.get_nonduplicated_atom
schrodinger.application.desmond.remd.get_num_constraint
schrodinger.application.desmond.remd.get_num_nonwateratom
schrodinger.application.desmond.remd.get_num_wateratom
schrodinger.application.desmond.remd.is_water
schrodinger.application.desmond.remd.predict_temperature_ladder
schrodinger.application.desmond.remd.predict_with_nreplica_and_exch
schrodinger.application.desmond.remd.predict_with_temp_and_exch
schrodinger.application.desmond.remd.predict_with_temp_and_nreplica
schrodinger.application.desmond.remd.rescale_ff
schrodinger.application.desmond.remd.rescale_ff_solute_tempering
schrodinger.application.desmond.remd.set_freezing_atommass
schrodinger.application.desmond.remd.split_ct
schrodinger.application.desmond.remd.test_freeze_atom
schrodinger.application.desmond.remd.test_get_degrees_of_freedom
schrodinger.application.desmond.remd.test_get_num_constraint
schrodinger.application.desmond.remd.test_get_num_nonwateratom
schrodinger.application.desmond.remd.test_get_num_wateratom
schrodinger.application.desmond.remd.test_predict_temperature
schrodinger.application.desmond.remd.test_predict_with_nreplica_and_exch
schrodinger.application.desmond.remd.test_predict_with_temp_and_nreplica
schrodinger.application.desmond.repair_cms._extract_membrane
schrodinger.application.desmond.repair_cms._extract_solvent
schrodinger.application.desmond.repair_cms.create_cms_from_mae
schrodinger.application.desmond.repair_cms.create_full_system_from_comp
schrodinger.application.desmond.repair_cms.decompose_to_comp_ct
schrodinger.application.desmond.repair_cms.repair_box_vector
schrodinger.application.desmond.simulation_block_data._debug_print
schrodinger.application.desmond.simulation_block_data.calc_block_average
schrodinger.application.desmond.simulation_block_data.get_block_summary
schrodinger.application.desmond.simulation_block_data.get_listof_props_ene
schrodinger.application.desmond.simulation_block_data.get_log_props
schrodinger.application.desmond.simulation_block_data.get_print_simbox_data
schrodinger.application.desmond.simulation_block_data.get_top_level_props
schrodinger.application.desmond.simulation_block_data.parse_sba
schrodinger.application.desmond.simulation_block_data.print_usage
schrodinger.application.desmond.simulation_block_data.write_sba_file
schrodinger.application.desmond.simulation_block_test._debug_print
schrodinger.application.desmond.simulation_block_test.gen_test
schrodinger.application.desmond.simulation_block_test.get_job_details
schrodinger.application.desmond.simulation_block_test.get_sbt_tests
schrodinger.application.desmond.simulation_block_test.parse_sbt
schrodinger.application.desmond.simulation_block_test.print_usage
schrodinger.application.desmond.simulation_block_test.process_chunks
schrodinger.application.desmond.struc.delete_atom_property
schrodinger.application.desmond.struc.delete_ct_property
schrodinger.application.desmond.struc.get_fragname
schrodinger.application.desmond.struc.get_residue_sitename
schrodinger.application.desmond.struc.get_sidechain_att_atom
schrodinger.application.desmond.struc.read_all_ct
schrodinger.application.desmond.struc.read_anni_fep_cms
schrodinger.application.desmond.struc.read_fep_cms
schrodinger.application.desmond.struc.rename_atom_property
schrodinger.application.desmond.system_builder_util.find_equivalent_st
schrodinger.application.desmond.system_builder_util.truncateProtein
schrodinger.application.desmond.system_builder_util.truncate_solvate_protein
schrodinger.application.desmond.table._test
schrodinger.application.desmond.util._strip_bracket
schrodinger.application.desmond.util.append_comment
schrodinger.application.desmond.util.busy_icon_exec
schrodinger.application.desmond.util.chdir
schrodinger.application.desmond.util.expand_macro
schrodinger.application.desmond.util.get_cmd_string
schrodinger.application.desmond.util.get_entry_id
schrodinger.application.desmond.util.get_indices
schrodinger.application.desmond.util.get_product_info
schrodinger.application.desmond.util.getlogin
schrodinger.application.desmond.util.html_embed_image
schrodinger.application.desmond.util.is_parent
schrodinger.application.desmond.util.is_powerof2
schrodinger.application.desmond.util.is_subdir
schrodinger.application.desmond.util.parent_dir
schrodinger.application.desmond.util.parse_geometry
schrodinger.application.desmond.util.parse_slice
schrodinger.application.desmond.util.print_if
schrodinger.application.desmond.util.random_string
schrodinger.application.desmond.util.relpath
schrodinger.application.desmond.util.remove_file
schrodinger.application.desmond.util.resize_window
schrodinger.application.desmond.util.resize_window2
schrodinger.application.desmond.util.symlink
schrodinger.application.desmond.util.time_duration
schrodinger.application.desmond.util.write_n_ct
schrodinger.application.glide.glide.read_constraints
schrodinger.application.glide.glideanalysis.get_enrichment_calculator
schrodinger.application.glide.poseviewconvert.get_parser
schrodinger.application.glide.poseviewconvert.is_pv_file
schrodinger.application.glide.poseviewconvert.main
schrodinger.application.glide.poseviewconvert.merge_pv_file
schrodinger.application.glide.poseviewconvert.pv2complex
schrodinger.application.glide.xp6classes.logwrapper
schrodinger.application.inputconfig.custom_is_list
schrodinger.application.inputconfig.custom_is_string_list
schrodinger.application.inputconfig.determine_jobtype
schrodinger.application.jaguar.input.get_name_file
schrodinger.application.jaguar.input.launch_file
schrodinger.application.jaguar.input.read
schrodinger.application.jaguar.input.split_structure_files
schrodinger.application.jaguar.no_stack
schrodinger.application.jaguar.output._diff
schrodinger.application.jaguar.output._store_input_geometry
schrodinger.application.jaguar.output.add_attribute_aliases
schrodinger.application.jaguar.output.alie_analysis
schrodinger.application.jaguar.output.alpha_polar
schrodinger.application.jaguar.output.basis_set
schrodinger.application.jaguar.output.beta_polar
schrodinger.application.jaguar.output.calc_type
schrodinger.application.jaguar.output.callback
schrodinger.application.jaguar.output.canorb
schrodinger.application.jaguar.output.compare_float
schrodinger.application.jaguar.output.convergence_category
schrodinger.application.jaguar.output.coords_frozen
schrodinger.application.jaguar.output.coords_harmonic
schrodinger.application.jaguar.output.coords_ind
schrodinger.application.jaguar.output.coords_nred
schrodinger.application.jaguar.output.coords_opt
schrodinger.application.jaguar.output.correlation_type
schrodinger.application.jaguar.output.electron_transfer
schrodinger.application.jaguar.output.electronic_e
schrodinger.application.jaguar.output.end_geometry
schrodinger.application.jaguar.output.end_scan
schrodinger.application.jaguar.output.end_time
schrodinger.application.jaguar.output.epn
schrodinger.application.jaguar.output.esp_analysis
schrodinger.application.jaguar.output.esp_charges
schrodinger.application.jaguar.output.esp_fit_atoms
schrodinger.application.jaguar.output.esp_fit_atoms_and_bonds
schrodinger.application.jaguar.output.etot
schrodinger.application.jaguar.output.excitation_energies
schrodinger.application.jaguar.output.fatal_error
schrodinger.application.jaguar.output.forces
schrodinger.application.jaguar.output.frequencies
schrodinger.application.jaguar.output.fukui_indices
schrodinger.application.jaguar.output.functional
schrodinger.application.jaguar.output.gamma_polar
schrodinger.application.jaguar.output.gen_charges
schrodinger.application.jaguar.output.geometry_read
schrodinger.application.jaguar.output.geometry_scan_step
schrodinger.application.jaguar.output.geopt_geometry
schrodinger.application.jaguar.output.geopt_stuck
schrodinger.application.jaguar.output.get_attribute_alias
schrodinger.application.jaguar.output.get_nmr
schrodinger.application.jaguar.output.gvblmp2
schrodinger.application.jaguar.output.homo
schrodinger.application.jaguar.output.irc_point
schrodinger.application.jaguar.output.irc_summary
schrodinger.application.jaguar.output.jobid
schrodinger.application.jaguar.output.join_structure_files
schrodinger.application.jaguar.output.lmp2
schrodinger.application.jaguar.output.lumo
schrodinger.application.jaguar.output.mae
schrodinger.application.jaguar.output.mae_in
schrodinger.application.jaguar.output.mol_weight
schrodinger.application.jaguar.output.molchg
schrodinger.application.jaguar.output.mulliken_charges
schrodinger.application.jaguar.output.multip
schrodinger.application.jaguar.output.multipole_esp
schrodinger.application.jaguar.output.multipole_moments
schrodinger.application.jaguar.output.multipole_mulliken
schrodinger.application.jaguar.output.multipole_qm
schrodinger.application.jaguar.output.nbasis
schrodinger.application.jaguar.output.non_default_print_options
schrodinger.application.jaguar.output.nucrep
schrodinger.application.jaguar.output.numerical_freqs
schrodinger.application.jaguar.output.one_e_terms
schrodinger.application.jaguar.output.orbital_energies
schrodinger.application.jaguar.output.point_group
schrodinger.application.jaguar.output.point_group_used
schrodinger.application.jaguar.output.pseudospectral
schrodinger.application.jaguar.output.qm_atoms
schrodinger.application.jaguar.output.qst_geometries
schrodinger.application.jaguar.output.qst_initial_geometry
schrodinger.application.jaguar.output.restart_name
schrodinger.application.jaguar.output.rolmp2
schrodinger.application.jaguar.output.s_min_eval
schrodinger.application.jaguar.output.scan_coordinates
schrodinger.application.jaguar.output.scfe
schrodinger.application.jaguar.output.solution_phase
schrodinger.application.jaguar.output.solvation
schrodinger.application.jaguar.output.solvation_job
schrodinger.application.jaguar.output.start_geometry
schrodinger.application.jaguar.output.start_of_program
schrodinger.application.jaguar.output.stoichiometry
schrodinger.application.jaguar.output.stopping_optimization
schrodinger.application.jaguar.output.symmetrized_geometry
schrodinger.application.jaguar.output.textparser_trace
schrodinger.application.jaguar.output.thermo_helper
schrodinger.application.jaguar.output.two_e_terms
schrodinger.application.jaguar.output.z_variables
schrodinger.application.jaguar.output.zpe
schrodinger.application.jaguar.script_dir
schrodinger.application.jaguar.utils.add_subjob_files
schrodinger.application.jaguar.utils.get_pybatch_optparser
schrodinger.application.lid.lid2d.compute.compute_complex_info
schrodinger.application.lid.lid2d.compute.compute_font_sizes
schrodinger.application.lid.lid2d.compute.compute_hbonds
schrodinger.application.lid.lid2d.compute.compute_ligand_atom_placements
schrodinger.application.lid.lid2d.compute.compute_line_width
schrodinger.application.lid.lid2d.compute.compute_molecules
schrodinger.application.lid.lid2d.compute.compute_picats
schrodinger.application.lid.lid2d.compute.compute_pipi_stacking
schrodinger.application.lid.lid2d.compute.compute_residue_placements
schrodinger.application.lid.lid2d.compute.get_atomic_sasa
schrodinger.application.lid.lid2d.draw.convert_color_list_to_bw
schrodinger.application.lid.lid2d.draw.convert_color_to_bw
schrodinger.application.lid.lid2d.draw.debug_draw_atom_ellipses_and_numbers
schrodinger.application.lid.lid2d.draw.draw_hbonds
schrodinger.application.lid.lid2d.draw.draw_picture_of_molecule
schrodinger.application.lid.lid2d.draw.draw_pipi_stacking
schrodinger.application.lid.lid2d.draw.draw_residue_and_text_at
schrodinger.application.lid.lid2d.draw.draw_residue_label_lines
schrodinger.application.lid.lid2d.draw.draw_residue_text
schrodinger.application.lid.lid2d.draw.draw_residues
schrodinger.application.lid.lid2d.draw.draw_solvent_exposures
schrodinger.application.lid.lid2d.draw.draw_text_at
schrodinger.application.lid.lid2d.draw.draw_white_background_of_text
schrodinger.application.lid.lid2d.draw.printTransform
schrodinger.application.lid.lid2d.graph.find_adjacent_not
schrodinger.application.lid.lid2d.graph.find_adjacent_not_no_lines
schrodinger.application.lid.lid2d.graph.find_paths_of_rotatable_bonds
schrodinger.application.lid.lid2d.graph.generate_all_atom_connections
schrodinger.application.lid.lid2d.graph.get_all_bonds_on_side
schrodinger.application.lid.lid2d.graph.sort_paths_by_number_of_atoms_on_side
schrodinger.application.lid.lid2d.overlap.does_ct_overlap
schrodinger.application.lid.lid2d.overlap.does_ct_overlap_split_at
schrodinger.application.lid.lid2d.overlap.residue_outside_of_image
schrodinger.application.lid.lid2d.overlap.residue_overlaps_hbond_or_pipi
schrodinger.application.lid.lid2d.overlap.residue_overlaps_ligand_or_label
schrodinger.application.lid.lid2d.render.save_ct_in_2d_with_coords
schrodinger.application.lid.lid2d.render.save_pic_to_file
schrodinger.application.lid.lid2d.rotate.create_bonds_checked_string
schrodinger.application.lid.lid2d.rotate.do_terminal_rotatable_bonds
schrodinger.application.lid.lid2d.rotate.rotate_all_bonds_and_save
schrodinger.application.lid.lid2d.rotate.rotate_all_bonds_and_save_path_sorted
schrodinger.application.lid.lid2d.rotate.rotate_bond_test_and_return_best
schrodinger.application.lid.lid2d.rotate.rotate_bonds_in_order_and_save
schrodinger.application.lid.lid2d.schroutils.convert_residue_text
schrodinger.application.lid.lid2d.schroutils.find_ligands
schrodinger.application.lid.lid2d.schroutils.get_metal_text
schrodinger.application.lid.lid2d.schroutils.get_residue_text
schrodinger.application.lid.lid2d.schroutils.residueUID
schrodinger.application.lid.lid2d.schroutils.splitResidueUID
schrodinger.application.lid.lid2d.utils.add_bounding_rect_offset
schrodinger.application.lid.lid2d.utils.add_bounding_rect_offset_xy
schrodinger.application.lid.lid2d.utils.add_bounding_rect_offset_xywh
schrodinger.application.lid.lid2d.utils.add_point_to_bbx
schrodinger.application.lid.lid2d.utils.add_to_dict_if_no_key
schrodinger.application.lid.lid2d.utils.areIntersecting2Dpts
schrodinger.application.lid.lid2d.utils.areIntersecting2DptsAdjacent
schrodinger.application.lid.lid2d.utils.comp_out_code
schrodinger.application.lid.lid2d.utils.compute3DAngle
schrodinger.application.lid.lid2d.utils.computeCrossProduct
schrodinger.application.lid.lid2d.utils.computeNormalFrom2Vectors
schrodinger.application.lid.lid2d.utils.computeUpVectorForLookAt
schrodinger.application.lid.lid2d.utils.convertArrayToMatrix
schrodinger.application.lid.lid2d.utils.convertArrayToMatrixT
schrodinger.application.lid.lid2d.utils.crossProduct2d
schrodinger.application.lid.lid2d.utils.cut_line_in_rectangle
schrodinger.application.lid.lid2d.utils.distance2D
schrodinger.application.lid.lid2d.utils.distance2DfromOrigin
schrodinger.application.lid.lid2d.utils.distance3D
schrodinger.application.lid.lid2d.utils.dot2d
schrodinger.application.lid.lid2d.utils.enclosed_by
schrodinger.application.lid.lid2d.utils.enumerate_vector_with_rot_angle_2d
schrodinger.application.lid.lid2d.utils.findCentroid
schrodinger.application.lid.lid2d.utils.inBetween
schrodinger.application.lid.lid2d.utils.line_overlaps_rectangle
schrodinger.application.lid.lid2d.utils.line_overlaps_sphere
schrodinger.application.lid.lid2d.utils.normalizeArray2d
schrodinger.application.lid.lid2d.utils.normalizeArray3d
schrodinger.application.lid.lid2d.utils.perp
schrodinger.application.lid.lid2d.utils.point_inside_rectangle
schrodinger.application.lid.lid2d.utils.premul
schrodinger.application.lid.lid2d.utils.ptSegDistSq
schrodinger.application.lid.lid2d.utils.ptSegDistSqPT
schrodinger.application.lid.lid2d.utils.pt_enclosed_by
schrodinger.application.lid.lid2d.utils.rectArea2D
schrodinger.application.lid.lid2d.utils.rectangle_overlaps_sphere
schrodinger.application.lid.lid2d.utils.rectangles_overlap
schrodinger.application.lid.lid2d.utils.rotVector
schrodinger.application.lid.lid2d.utils.rot_vect
schrodinger.application.lid.lid2d.utils.sgn
schrodinger.application.lid.lid2d.utils.size2D
schrodinger.application.lid.lid2d.utils.sort_first_element
schrodinger.application.lid.lid2d.utils.transformPoint
schrodinger.application.lid.lid2d.utils.whichSideIsPoint
schrodinger.application.lid.lid2d.utils.workspace_set_view_matrix_4x4
schrodinger.application.lid.lid_savedialog_ui._fromUtf8
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram_from_complex
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram_from_complex_file
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram_from_either
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram_from_either_ct
schrodinger.application.lid.ligand_interaction_diagram.LigandInteractionDiagram_from_split_file
schrodinger.application.lid.ligand_interaction_diagram._main
schrodinger.application.lid.ligand_interaction_diagram.check_hbond_distance_and_move_away
schrodinger.application.lid.ligand_interaction_diagram.compute_all_hbond_res_overlaps
schrodinger.application.lid.ligand_interaction_diagram.compute_residue_overlap
schrodinger.application.lid.ligand_interaction_diagram.compute_residue_overlaps
schrodinger.application.lid.ligand_interaction_diagram.convert_ct_to_2d
schrodinger.application.lid.ligand_interaction_diagram.determine_image_size_and_ligand_position
schrodinger.application.lid.ligand_interaction_diagram.fill_parameters
schrodinger.application.lid.ligand_interaction_diagram.find_spot_for_residue
schrodinger.application.lid.ligand_interaction_diagram.generate_2D_image_from_protein_ligand
schrodinger.application.lid.ligand_interaction_diagram.generate_lid_picture_draw
schrodinger.application.lid.ligand_interaction_diagram.generate_twod_and_paths_data
schrodinger.application.lid.ligand_interaction_diagram.initialize_res_placements_to_screen
schrodinger.application.lid.ligand_interaction_diagram.is_watermap_type
schrodinger.application.lid.ligand_interaction_diagram.move_residue_away_from_hbond
schrodinger.application.lid.ligand_interaction_diagram.move_residues
schrodinger.application.lid.ligand_interaction_diagram.printTransform
schrodinger.application.lid.ligand_interaction_diagram.render_2d_image
schrodinger.application.lid.ligand_interaction_diagram.spread_residues_if_overlapped
schrodinger.application.lid.ligand_interaction_diagram_gui.changeGUIforWaterMap
schrodinger.application.lid.ligand_interaction_diagram_gui.choose_ligand_cb
schrodinger.application.lid.ligand_interaction_diagram_gui.compare_list_first_entry
schrodinger.application.lid.ligand_interaction_diagram_gui.compare_list_first_two_entries
schrodinger.application.lid.ligand_interaction_diagram_gui.draw_image_into_rect
schrodinger.application.lid.ligand_interaction_diagram_gui.get_ligand_from_complex
schrodinger.application.lid.ligand_interaction_diagram_gui.panel
schrodinger.application.lid.ligand_interaction_diagram_gui.quit
schrodinger.application.lid.ligand_interaction_diagram_gui.reload
schrodinger.application.lid.ligand_interaction_diagram_gui.resetApp
schrodinger.application.lid.ligand_interaction_diagram_gui.setsAreSame
schrodinger.application.lid.ligand_interaction_diagram_gui.sortRows
schrodinger.application.lid.ligand_interaction_diagram_gui.structures_have_hydrogens
schrodinger.application.lid.ligand_interaction_diagram_rc.qCleanupResources
schrodinger.application.lid.ligand_interaction_diagram_rc.qInitResources
schrodinger.application.lid.ligand_interaction_diagram_test.run
schrodinger.application.lid.ligand_interaction_diagram_test.runAll
schrodinger.application.lid.ligand_interaction_diagram_ui._fromUtf8
schrodinger.application.macromodel.apps.converge_search
schrodinger.application.macromodel.apps.get_energy
schrodinger.application.macromodel.apps.get_lead_confs
schrodinger.application.macromodel.apps.get_rep_confs
schrodinger.application.macromodel.paraUtils._append_st_file
schrodinger.application.macromodel.paraUtils._generate_subjobs
schrodinger.application.macromodel.paraUtils._get_jobs_to_run
schrodinger.application.macromodel.paraUtils._merge_subjobs
schrodinger.application.macromodel.paraUtils._print_subjob_logfile
schrodinger.application.macromodel.paraUtils._run_subjobs
schrodinger.application.macromodel.paraUtils._timestamp
schrodinger.application.macromodel.paraUtils.add_para_job_options
schrodinger.application.macromodel.paraUtils.launch_subjobs
schrodinger.application.macromodel.paraUtils.print_job_info
schrodinger.application.macromodel.paraUtils.validate_options
schrodinger.application.macromodel.tools._count
schrodinger.application.macromodel.tools.count
schrodinger.application.macromodel.tools.serial_split
schrodinger.application.macromodel.utils.write_hst_file
schrodinger.application.mcpro.guide.__step_cmd
schrodinger.application.mcpro.modelsystemwizard._check_hydrogen
schrodinger.application.mcpro.modelsystemwizard._error_dialog
schrodinger.application.mcpro.modelsystemwizard._gen_pert_movie
schrodinger.application.mcpro.modelsystemwizard._remove_file
schrodinger.application.mcpro.modelsystemwizard._remove_tmpfiles
schrodinger.application.mcpro.modelsystemwizard._restrict_entryfield
schrodinger.application.mcpro.modelsystemwizard._run_command
schrodinger.application.mcpro.modelsystemwizard._warning_dialog
schrodinger.application.mcpro.perturbations.adjustDum
schrodinger.application.mcpro.perturbations.convert_to_pos_dihedral
schrodinger.application.mcpro.perturbations.find_pert_db
schrodinger.application.mcpro.perturbations.gen_reordered_ct
schrodinger.application.mcpro.perturbations.import_perturbations
schrodinger.application.mcpro.perturbations.modify_ct
schrodinger.application.mcpro.perturbations.set_dummy_geometry
schrodinger.application.mcpro.solvent.stringsValidate
schrodinger.application.mcpro.zmat.removeOrientDummyAtoms
schrodinger.application.medchem.property.compute_alogp
schrodinger.application.medchem.property.compute_medchem_properties
schrodinger.application.medchem.property.compute_mw
schrodinger.application.medchem.property.compute_num_hbond_acceptors
schrodinger.application.medchem.property.compute_num_hbond_donors
schrodinger.application.medchem.property.compute_num_rot_bonds
schrodinger.application.medchem.property.compute_polar_surf_area
schrodinger.application.medchem.property.compute_smiles
schrodinger.application.medchem.property.compute_title
schrodinger.application.moldescriptors._calculate_alogp
schrodinger.application.moldescriptors._calculate_balaban_and_looping_centic
schrodinger.application.moldescriptors._calculate_charge_term_matrix
schrodinger.application.moldescriptors._calculate_field_effect
schrodinger.application.moldescriptors._calculate_mopac_desc
schrodinger.application.moldescriptors._calculate_mr
schrodinger.application.moldescriptors._calculate_peoe
schrodinger.application.moldescriptors._calculate_qikprop_desc
schrodinger.application.moldescriptors._calculate_sum_of_topological_distances
schrodinger.application.moldescriptors._calculate_topo_desc
schrodinger.application.moldescriptors._check_canvas_license
schrodinger.application.moldescriptors._do_cleanup
schrodinger.application.moldescriptors._export_to_csv
schrodinger.application.moldescriptors._export_to_mae
schrodinger.application.moldescriptors._get_command_output
schrodinger.application.moldescriptors._get_descriptors
schrodinger.application.moldescriptors._get_maestro_type
schrodinger.application.moldescriptors._get_mopac_keyword
schrodinger.application.moldescriptors._get_mopac_results
schrodinger.application.moldescriptors._get_principal_quantum_number
schrodinger.application.moldescriptors._get_qikprop_cmd
schrodinger.application.moldescriptors._get_scientific_matrix
schrodinger.application.moldescriptors._print_descriptors
schrodinger.application.moldescriptors._read_yaml_file
schrodinger.application.moldescriptors.add_moldescriptors_options
schrodinger.application.moldescriptors.calculate_alogp1
schrodinger.application.moldescriptors.calculate_alogp10
schrodinger.application.moldescriptors.calculate_alogp2
schrodinger.application.moldescriptors.calculate_alogp3
schrodinger.application.moldescriptors.calculate_alogp4
schrodinger.application.moldescriptors.calculate_alogp5
schrodinger.application.moldescriptors.calculate_alogp6
schrodinger.application.moldescriptors.calculate_alogp7
schrodinger.application.moldescriptors.calculate_alogp8
schrodinger.application.moldescriptors.calculate_alogp9
schrodinger.application.moldescriptors.calculate_atom_rings_count
schrodinger.application.moldescriptors.calculate_atomcount
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_0
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_1
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_2
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_3
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_4
schrodinger.application.moldescriptors.calculate_average_connectivity_chi_5
schrodinger.application.moldescriptors.calculate_average_eccentricity
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_0
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_1
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_2
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_3
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_4
schrodinger.application.moldescriptors.calculate_average_valence_connectivity_chi_5
schrodinger.application.moldescriptors.calculate_average_vertex_distance_degree
schrodinger.application.moldescriptors.calculate_balaban_centric_index
schrodinger.application.moldescriptors.calculate_balaban_distance_connectivity
schrodinger.application.moldescriptors.calculate_balaban_electronegativity_matrix
schrodinger.application.moldescriptors.calculate_balaban_mass_matrix
schrodinger.application.moldescriptors.calculate_balaban_polarizability_matrix
schrodinger.application.moldescriptors.calculate_balaban_van_der_waals_matrix
schrodinger.application.moldescriptors.calculate_balaban_z_matrix
schrodinger.application.moldescriptors.calculate_bond_rings_count
schrodinger.application.moldescriptors.calculate_bondcount
schrodinger.application.moldescriptors.calculate_centralization
schrodinger.application.moldescriptors.calculate_chiral_count
schrodinger.application.moldescriptors.calculate_connectivity_chi_0
schrodinger.application.moldescriptors.calculate_connectivity_chi_2
schrodinger.application.moldescriptors.calculate_connectivity_chi_3
schrodinger.application.moldescriptors.calculate_connectivity_chi_4
schrodinger.application.moldescriptors.calculate_connectivity_chi_5
schrodinger.application.moldescriptors.calculate_cyclomatic
schrodinger.application.moldescriptors.calculate_e_state
schrodinger.application.moldescriptors.calculate_eccentric
schrodinger.application.moldescriptors.calculate_eccentric_connectivity
schrodinger.application.moldescriptors.calculate_eccentricity
schrodinger.application.moldescriptors.calculate_first_mohar
schrodinger.application.moldescriptors.calculate_geometric_topological
schrodinger.application.moldescriptors.calculate_global_topological_charge
schrodinger.application.moldescriptors.calculate_gutman_molecular_topological
schrodinger.application.moldescriptors.calculate_gutman_mti_valence_vertex_degrees
schrodinger.application.moldescriptors.calculate_harary
schrodinger.application.moldescriptors.calculate_harmonic_topological
schrodinger.application.moldescriptors.calculate_hyper_distance_path
schrodinger.application.moldescriptors.calculate_kier_alpha_modified_shape_1
schrodinger.application.moldescriptors.calculate_kier_alpha_modified_shape_2
schrodinger.application.moldescriptors.calculate_kier_alpha_modified_shape_3
schrodinger.application.moldescriptors.calculate_kier_benzene_likeliness
schrodinger.application.moldescriptors.calculate_kier_flexbility
schrodinger.application.moldescriptors.calculate_kier_hall_electronegativity_index
schrodinger.application.moldescriptors.calculate_looping_centric_index
schrodinger.application.moldescriptors.calculate_lprs
schrodinger.application.moldescriptors.calculate_mean_distance_degree_deviation
schrodinger.application.moldescriptors.calculate_mean_square_distance_balaban
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_1
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_10
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_2
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_3
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_4
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_5
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_6
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_7
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_8
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_9
schrodinger.application.moldescriptors.calculate_mean_topological_charge_index_order_n
schrodinger.application.moldescriptors.calculate_mean_wiener
schrodinger.application.moldescriptors.calculate_menv
schrodinger.application.moldescriptors.calculate_mepv
schrodinger.application.moldescriptors.calculate_mev
schrodinger.application.moldescriptors.calculate_modified_randic_connectivity
schrodinger.application.moldescriptors.calculate_molecule_cyclized_degree
schrodinger.application.moldescriptors.calculate_mr1
schrodinger.application.moldescriptors.calculate_mr2
schrodinger.application.moldescriptors.calculate_mr3
schrodinger.application.moldescriptors.calculate_mr4
schrodinger.application.moldescriptors.calculate_mr5
schrodinger.application.moldescriptors.calculate_mr6
schrodinger.application.moldescriptors.calculate_mr7
schrodinger.application.moldescriptors.calculate_mr8
schrodinger.application.moldescriptors.calculate_normalized_num_ring_systems
schrodinger.application.moldescriptors.calculate_num_ring_systems
schrodinger.application.moldescriptors.calculate_path_walk_2
schrodinger.application.moldescriptors.calculate_path_walk_3
schrodinger.application.moldescriptors.calculate_path_walk_4
schrodinger.application.moldescriptors.calculate_path_walk_5
schrodinger.application.moldescriptors.calculate_peoe1
schrodinger.application.moldescriptors.calculate_peoe10
schrodinger.application.moldescriptors.calculate_peoe11
schrodinger.application.moldescriptors.calculate_peoe12
schrodinger.application.moldescriptors.calculate_peoe13
schrodinger.application.moldescriptors.calculate_peoe14
schrodinger.application.moldescriptors.calculate_peoe2
schrodinger.application.moldescriptors.calculate_peoe3
schrodinger.application.moldescriptors.calculate_peoe4
schrodinger.application.moldescriptors.calculate_peoe5
schrodinger.application.moldescriptors.calculate_peoe6
schrodinger.application.moldescriptors.calculate_peoe7
schrodinger.application.moldescriptors.calculate_peoe8
schrodinger.application.moldescriptors.calculate_peoe9
schrodinger.application.moldescriptors.calculate_petitjean_shape
schrodinger.application.moldescriptors.calculate_pogliani
schrodinger.application.moldescriptors.calculate_polarity
schrodinger.application.moldescriptors.calculate_qindex
schrodinger.application.moldescriptors.calculate_quasi_wiener
schrodinger.application.moldescriptors.calculate_radial_centric
schrodinger.application.moldescriptors.calculate_ramification
schrodinger.application.moldescriptors.calculate_randic_connectivity
schrodinger.application.moldescriptors.calculate_reciprocal_distance_randic
schrodinger.application.moldescriptors.calculate_reciprocal_distance_square_randic
schrodinger.application.moldescriptors.calculate_reciprocal_hyper_distance_path
schrodinger.application.moldescriptors.calculate_ring_bridge
schrodinger.application.moldescriptors.calculate_ring_complexity_index
schrodinger.application.moldescriptors.calculate_ring_fusion_degree
schrodinger.application.moldescriptors.calculate_ring_fusion_density
schrodinger.application.moldescriptors.calculate_ring_perimeter
schrodinger.application.moldescriptors.calculate_ringcount
schrodinger.application.moldescriptors.calculate_ringcount10
schrodinger.application.moldescriptors.calculate_ringcount11
schrodinger.application.moldescriptors.calculate_ringcount12
schrodinger.application.moldescriptors.calculate_ringcount13
schrodinger.application.moldescriptors.calculate_ringcount14
schrodinger.application.moldescriptors.calculate_ringcount15
schrodinger.application.moldescriptors.calculate_ringcount16
schrodinger.application.moldescriptors.calculate_ringcount17
schrodinger.application.moldescriptors.calculate_ringcount18
schrodinger.application.moldescriptors.calculate_ringcount19
schrodinger.application.moldescriptors.calculate_ringcount20
schrodinger.application.moldescriptors.calculate_ringcount3
schrodinger.application.moldescriptors.calculate_ringcount4
schrodinger.application.moldescriptors.calculate_ringcount5
schrodinger.application.moldescriptors.calculate_ringcount6
schrodinger.application.moldescriptors.calculate_ringcount7
schrodinger.application.moldescriptors.calculate_ringcount8
schrodinger.application.moldescriptors.calculate_ringcount9
schrodinger.application.moldescriptors.calculate_second_mohar
schrodinger.application.moldescriptors.calculate_simple_topological
schrodinger.application.moldescriptors.calculate_smt
schrodinger.application.moldescriptors.calculate_smt_valence_vertex_degree
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_0
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_1
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_2
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_3
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_4
schrodinger.application.moldescriptors.calculate_solvation_connectivity_indices_5
schrodinger.application.moldescriptors.calculate_spanning_tree_number
schrodinger.application.moldescriptors.calculate_square_reciprocal_distance_sum
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_Br_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_Br_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_Cl_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_Cl_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_Cl_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_F_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_F_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_F_and_F
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_F_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_I_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_F
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_N
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_O
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_P
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_N_and_S
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_F
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_O
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_P
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_O_and_S
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_P_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_P_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_P_and_F
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_P_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_P_and_P
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_Br
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_Cl
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_F
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_I
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_P
schrodinger.application.moldescriptors.calculate_sum_of_topological_distances_between_S_and_S
schrodinger.application.moldescriptors.calculate_superpendentic
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_1
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_10
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_2
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_3
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_4
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_5
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_6
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_7
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_8
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_9
schrodinger.application.moldescriptors.calculate_topological_charge_index_order_n
schrodinger.application.moldescriptors.calculate_topological_diameter
schrodinger.application.moldescriptors.calculate_topological_radius
schrodinger.application.moldescriptors.calculate_total_ring_size
schrodinger.application.moldescriptors.calculate_total_structure_connectivity
schrodinger.application.moldescriptors.calculate_unipolarity
schrodinger.application.moldescriptors.calculate_using_file
schrodinger.application.moldescriptors.calculate_using_st
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_0
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_1
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_2
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_3
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_4
schrodinger.application.moldescriptors.calculate_valence_connectivity_chi_5
schrodinger.application.moldescriptors.calculate_van_der_waals_surface_area
schrodinger.application.moldescriptors.calculate_variation
schrodinger.application.moldescriptors.calculate_wiener
schrodinger.application.moldescriptors.calculate_wiener_electronegativity_matrix
schrodinger.application.moldescriptors.calculate_wiener_mass_matrix
schrodinger.application.moldescriptors.calculate_wiener_polarizability_matrix
schrodinger.application.moldescriptors.calculate_wiener_van_der_waals_matrix
schrodinger.application.moldescriptors.calculate_wiener_z_matrix
schrodinger.application.moldescriptors.calculate_xu
schrodinger.application.moldescriptors.calculate_zagreb_m1
schrodinger.application.moldescriptors.calculate_zagreb_m1_valence_vertex_degree
schrodinger.application.moldescriptors.calculate_zagreb_m2
schrodinger.application.moldescriptors.calculate_zagreb_m2_valence_vertex_degree
schrodinger.application.moldescriptors.get_mopac_codes
schrodinger.application.moldescriptors.get_mopac_methods
schrodinger.application.moldescriptors.get_qikprop_properties
schrodinger.application.moldescriptors.init
schrodinger.application.mopac._cleanup_external
schrodinger.application.mopac._make_scratch_dir
schrodinger.application.mopac._open_file
schrodinger.application.mopac._run_cleanup
schrodinger.application.mopac._run_locally
schrodinger.application.mopac.calculate
schrodinger.application.mopac.get_error_text
schrodinger.application.mopac.get_mopac_jobname
schrodinger.application.mopac.is_mopac_file
schrodinger.application.mopac.run
schrodinger.application.phase.hypothesis._get_entry_hypo_data_file
schrodinger.application.phase.hypothesis.debug
schrodinger.application.phase.hypothesis.generate_from_ligand
schrodinger.application.phase.hypothesis.get_entry_hypothesis
schrodinger.application.phase.hypothesis.hypo_exists
schrodinger.application.phase.hypothesis.remove_hypo_if_present
schrodinger.application.prepwizard._count_bonds
schrodinger.application.prepwizard._find_waters
schrodinger.application.prepwizard._generate_metal_states
schrodinger.application.prepwizard._generate_phosphate_states
schrodinger.application.prepwizard._generate_sulfate_states
schrodinger.application.prepwizard._run_prime_job
schrodinger.application.prepwizard._set_oxygen_orders
schrodinger.application.prepwizard.atomsasl
schrodinger.application.prepwizard.check_st_valences
schrodinger.application.prepwizard.convert_selenomethionines
schrodinger.application.prepwizard.count_phosphates_and_sulfurs
schrodinger.application.prepwizard.create_disulfide_bonds
schrodinger.application.prepwizard.extend_phosphate_states
schrodinger.application.prepwizard.extend_sulfate_states
schrodinger.application.prepwizard.fill_missing_loops
schrodinger.application.prepwizard.fill_missing_side_chains
schrodinger.application.prepwizard.fix_common_structure_mistakes
schrodinger.application.prepwizard.fix_sulfur_charges
schrodinger.application.prepwizard.generate_special_states
schrodinger.application.prepwizard.get_bridging_waters
schrodinger.application.prepwizard.get_chain_sequences
schrodinger.application.prepwizard.prepare_for_epik
schrodinger.application.prepwizard.write_sequences_to_fasta
schrodinger.application.prime.primefix.fix_for_prime
schrodinger.application.prime.primefix.fix_formal_charge
schrodinger.application.prime.primefix.is_metal
schrodinger.application.qsite.output.angle_bend_energy
schrodinger.application.qsite.output.bond_stretch_energy
schrodinger.application.qsite.output.bondchg_repulsion_energy
schrodinger.application.qsite.output.callback
schrodinger.application.qsite.output.electrostatic14_energy
schrodinger.application.qsite.output.electrostatic_energy
schrodinger.application.qsite.output.ffld
schrodinger.application.qsite.output.hbond_energy
schrodinger.application.qsite.output.jaguar_atoms
schrodinger.application.qsite.output.lj14_energy
schrodinger.application.qsite.output.lj_energy
schrodinger.application.qsite.output.nb_cutoff
schrodinger.application.qsite.output.nb_update
schrodinger.application.qsite.output.nconmm
schrodinger.application.qsite.output.ncuts
schrodinger.application.qsite.output.nddo_atoms
schrodinger.application.qsite.output.nddo_hcaps
schrodinger.application.qsite.output.nfrzmm
schrodinger.application.qsite.output.nhcaps
schrodinger.application.qsite.output.qm_atoms
schrodinger.application.qsite.output.qmmm_bend_energy
schrodinger.application.qsite.output.qmmm_electrostatic_energy
schrodinger.application.qsite.output.qmmm_stretch_energy
schrodinger.application.qsite.output.qmmm_torsion_energy
schrodinger.application.qsite.output.torsion_energy
schrodinger.application.qsite.output.total_atoms
schrodinger.application.qsite.output.total_energy
schrodinger.application.qsite.output.total_kinetic_energy
schrodinger.application.qsite.output.total_potential_energy
schrodinger.application.report2d.generate_html
schrodinger.application.report2d.generate_pdf
schrodinger.application.report2d.generate_xls
schrodinger.application.ska.force_rmdir
schrodinger.application.ska.multiple_align_ct
schrodinger.application.ska.multiple_align_pdb
schrodinger.application.ska.pairwise_align_ct
schrodinger.application.ska.pairwise_align_pdb
schrodinger.application.ska.run_align
schrodinger.application.ska.transform_structure
schrodinger.application.utils.find_product_package_dir
schrodinger.application.vsw.vswinput.parse_command_line
schrodinger.application.watermap.utils.archive_wm
schrodinger.application.watermap.watermap_inp.main
schrodinger.application.watermap.watermap_scoring.score_ligand
schrodinger.get_suite_year
schrodinger.graphics3d.arrow.vector_cross
schrodinger.graphics3d.arrow.vector_normalize
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schrodinger.graphics3d.common.color_arg_to_rgb
schrodinger.graphics3d.common.create_normal
schrodinger.graphics3d.common.get_cross
schrodinger.graphics3d.common.get_normalized
schrodinger.graphics3d.polyhedron.origin_to_point
schrodinger.graphics3d.polyhedron.scale_vertices
schrodinger.infra._licensing.License_checkin
schrodinger.infra._licensing.License_swigregister
schrodinger.infra._licensing.delete_License
schrodinger.infra._licensing.new_License
schrodinger.infra._ska.run_ska
schrodinger.infra.ark.fromArgv
schrodinger.infra.ark.fromString
schrodinger.infra.ark.toString
schrodinger.infra.licensing._swig_getattr
schrodinger.infra.licensing._swig_setattr
schrodinger.infra.mm._c_function_proxy
schrodinger.infra.mm._get_mm_prefix
schrodinger.infra.mm._trace_log
schrodinger.infra.mm._wrap_pymmlibs
schrodinger.infra.mm.get_mm_return_codes
schrodinger.infra.mmerr.pop_level
schrodinger.infra.mmerr.push_level
schrodinger.infra.mmim._convert_to_bool
schrodinger.infra.mmim._convert_to_bool_array
schrodinger.infra.mmim._convert_to_float_array
schrodinger.infra.mmim._convert_to_int_array
schrodinger.infra.mmim._convert_to_string_array
schrodinger.infra.mmim._get_handlers
schrodinger.infra.mmim._get_key_data
schrodinger.infra.mmim.convert_string
schrodinger.infra.mmlist._mmlist_from_pylist
schrodinger.infra.mmlist._mmlist_to_pylist
schrodinger.infra.propedit.addProperty
schrodinger.infra.propedit.calcProperty
schrodinger.infra.propedit.checkCT
schrodinger.infra.propedit.checkCompatibleTypes
schrodinger.infra.propedit.check_formula
schrodinger.infra.propedit.clear
schrodinger.infra.propedit.conv_bool
schrodinger.infra.propedit.copyProperty
schrodinger.infra.propedit.delete
schrodinger.infra.propedit.exportFile
schrodinger.infra.propedit.fxnname
schrodinger.infra.propedit.generate_eval_string
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schrodinger.infra.propedit.generate_groups
schrodinger.infra.propedit.get_op_positions
schrodinger.infra.propedit.get_type
schrodinger.infra.propedit.listElements
schrodinger.infra.propedit.listProps
schrodinger.infra.propedit.merge
schrodinger.infra.propedit.merge_op_positions
schrodinger.infra.propedit.printvals
schrodinger.infra.propedit.readData
schrodinger.infra.propedit.renameProperty
schrodinger.infra.propedit.sliceProp
schrodinger.infra.propedit.split
schrodinger.infra.table._is_data_name
schrodinger.job.app._remove
schrodinger.job.hunt_cache.canonicalize_key
schrodinger.job.jobcontrol._fix_cmd
schrodinger.job.jobcontrol._fix_launch_cmd
schrodinger.job.jobcontrol._fix_program_path
schrodinger.job.jobcontrol._get_host
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schrodinger.job.jobcontrol.get_backend
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schrodinger.job.jobcontrol.get_hostfile
schrodinger.job.jobcontrol.get_hosts
schrodinger.job.jobcontrol.get_job_selection
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schrodinger.job.jobcontrol.get_runtime_path
schrodinger.job.jobcontrol.host_list_to_str
schrodinger.job.jobcontrol.host_str_to_list
schrodinger.job.jobcontrol.launch_job
schrodinger.job.jobcontrol.read
schrodinger.job.jobcontrol.under_job_control
schrodinger.job.launcher.launch
schrodinger.job.queue._host_is_queue
schrodinger.job.queue._wrap_job_finalizer
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schrodinger.job.queue.get_command
schrodinger.job.remote_command._rsh_cmd
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schrodinger.job.remote_command.rsh_test
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schrodinger.job.remote_command.which
schrodinger.job.timestamp.dhm_to_seconds
schrodinger.job.timestamp.long
schrodinger.job.timestamp.output_timezone
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schrodinger.job.timestamp.ymdhms
schrodinger.job.util._fast_hunt
schrodinger.job.util.hunt
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schrodinger.maestro.maestro._invoke_level_of_detail_callbacks
schrodinger.maestro.maestro._invoke_periodic_callbacks
schrodinger.maestro.maestro._invoke_pick_callback
schrodinger.maestro.maestro._invoke_picking_loss_callback
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schrodinger.maestro.maestro._invoke_project_rename_callbacks
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schrodinger.maestro.maestro._invoke_right_click_callbacks
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schrodinger.maestro.maestro._invoke_workspace_changed_callbacks
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schrodinger.maestro.maestro.add_job_launch_log
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schrodinger.maestro.maestro.atom_selection_dialog
schrodinger.maestro.maestro.command
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schrodinger.maestro.maestro.create_cone
schrodinger.maestro.maestro.create_cylinder
schrodinger.maestro.maestro.create_entry_from_workspace
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schrodinger.maestro.maestro.draw_html_string
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schrodinger.maestro.maestro.hide_object
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schrodinger.maestro.maestro.info
schrodinger.maestro.maestro.is_maestro_elements
schrodinger.maestro.maestro.job_exit_status_get
schrodinger.maestro.maestro.job_id_get
schrodinger.maestro.maestro.job_incorporation_function_add
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schrodinger.maestro.maestro.job_status_get
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schrodinger.maestro.maestro.level_of_detail_callback_add
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schrodinger.maestro.maestro.periodic_callback_add
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schrodinger.maestro.maestro.picking_atom_start
schrodinger.maestro.maestro.picking_bond_start
schrodinger.maestro.maestro.picking_loss_notify
schrodinger.maestro.maestro.picking_stop
schrodinger.maestro.maestro.process_pending_events
schrodinger.maestro.maestro.project_close_callback_add
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schrodinger.maestro.maestro.project_get
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schrodinger.maestro.maestro.project_table_get
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schrodinger.maestro.maestro.rebuild_scripts_menu
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schrodinger.maestro.maestro.redraw
schrodinger.maestro.maestro.redraw_request
schrodinger.maestro.maestro.regenerate_markers
schrodinger.maestro.maestro.remove_object
schrodinger.maestro.maestro.reset_workspace_transformations
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schrodinger.maestro.maestro.selected_atoms_get
schrodinger.maestro.maestro.selected_atoms_get_asl
schrodinger.maestro.maestro.set_colors
schrodinger.maestro.maestro.set_coords
schrodinger.maestro.maestro.set_coords2
schrodinger.maestro.maestro.set_current_application_panel_callback
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schrodinger.maestro.maestro.set_pick_category
schrodinger.maestro.maestro.set_pick_id
schrodinger.maestro.maestro.set_polyhedron_style
schrodinger.maestro.maestro.set_project_command
schrodinger.maestro.maestro.set_prompt_mode_for_next_export
schrodinger.maestro.maestro.set_radius
schrodinger.maestro.maestro.set_workspace_bounding_box
schrodinger.maestro.maestro.show_docking_panels_window
schrodinger.maestro.maestro.show_object
schrodinger.maestro.maestro.start_picking
schrodinger.maestro.maestro.stop_picking
schrodinger.maestro.maestro.tk_toplevel_add
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schrodinger.maestro.maestro.warning
schrodinger.maestro.maestro.workspace_bounding_box_function_add
schrodinger.maestro.maestro.workspace_bounding_box_function_remove
schrodinger.maestro.maestro.workspace_changed_function_add
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schrodinger.maestro.maestro.workspace_draw_function_add
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schrodinger.maestro.maestro.workspace_get
schrodinger.maestro.maestro.workspace_get_coordinate_center
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schrodinger.maestro.maestro.workspace_get_view_matrix_inverse_no_center
schrodinger.maestro.maestro.workspace_get_viewing_volume
schrodinger.maestro.maestro.workspace_set
schrodinger.maestro.maestro.write_entries_from_project
schrodinger.pipeline.pipeline.Restart
schrodinger.pipeline.pipeline._get_job
schrodinger.pipeline.pipeline._host_is_queue
schrodinger.pipeline.pipeline.add_host_lists
schrodinger.pipeline.pipeline.importName
schrodinger.pipeline.pipeline.log
schrodinger.pipeline.pipeline.logn
schrodinger.pipeline.pipeline.subtract_host_lists
schrodinger.pipeline.pipeutils.countRoots
schrodinger.pipeline.pipeutils.get_last_20_lines
schrodinger.pipeline.pipeutils.read_unique_field
schrodinger.pipeline.stage.Restart
schrodinger.pipeline.stage._host_is_queue
schrodinger.pipeline.stage.get_time
schrodinger.pipeline.stages.combine.get_atom_str
schrodinger.pipeline.stages.filtering._get_reader
schrodinger.pipeline.stages.gencodes._get_reader
schrodinger.pipeline.stages.glide._get_reader
schrodinger.pipeline.stages.glide.compress
schrodinger.pipeline.stages.ligprep._get_reader
schrodinger.pipeline.stages.ligprep.compress
schrodinger.pipeline.stages.ligprep.get_energy
schrodinger.pipeline.stages.macromodel._get_reader
schrodinger.pipeline.stages.phase.check_subset_existence
schrodinger.pipeline.stages.phase.extract_properties
schrodinger.pipeline.stages.phase.print_last_lines_of_file
schrodinger.pipeline.stages.pull._get_reader
schrodinger.pipeline.stages.qikprop._get_reader
schrodinger.project.delete_temp_project_directory
schrodinger.project.open_project
schrodinger.protein.assignment.measure
schrodinger.protein.assignment.randn
schrodinger.protein.assignment.report
schrodinger.protein.captermini._compare_sts_by_lowest_residue
schrodinger.protein.captermini._get_lowest_residue
schrodinger.protein.captermini._increment_inscode
schrodinger.protein.captermini.cap_termini
schrodinger.protein.captermini.res_can_be_capped
schrodinger.protein.findhets.find_hets
schrodinger.protein.findhets.is_metal
schrodinger.protein.getpdb._temporarize_path
schrodinger.protein.getpdb.download_ent
schrodinger.protein.getpdb.download_fasta
schrodinger.protein.getpdb.download_file
schrodinger.protein.getpdb.download_pdb
schrodinger.protein.getpdb.find_local_pdb
schrodinger.protein.getpdb.find_local_repository
schrodinger.protein.getpdb.get_ent
schrodinger.protein.getpdb.get_entryimport_opts
schrodinger.protein.getpdb.get_pdb
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schrodinger.protein.getpdb.retrieve_ent
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schrodinger.protein.getpdb.set_entryimport_opts
schrodinger.protein.getpdb.set_opener
schrodinger.protein.helix.get_fragment_structure
schrodinger.protein.helix.grow_fragment
schrodinger.protein.helix.process_sequence
schrodinger.protein.remediate.remediate_ct
schrodinger.protein.sequence.convert_sequence_for_pattern_search
schrodinger.protein.sequence.find_generalized_pattern
schrodinger.protein.sequence.find_pattern
schrodinger.protein.sequence.get_structure_sequences
schrodinger.structure._addBond
schrodinger.structure._check_format
schrodinger.structure._map_to_dict
schrodinger.structure.count_structures
schrodinger.structure.create_new_structure
schrodinger.structure.read_ct
schrodinger.structure.write_ct
schrodinger.structure.write_ct_as_text
schrodinger.structure.write_ct_mol2
schrodinger.structure.write_ct_pdb
schrodinger.structure.write_ct_sd
schrodinger.structure.write_ct_smiles
schrodinger.structure.write_ct_to_sd_string
schrodinger.structure.write_ct_to_string
schrodinger.structutils.assignbondorders._add_bond_entry
schrodinger.structutils.assignbondorders._assign_templated_residue
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schrodinger.structutils.assignbondorders._residue_atom_subset
schrodinger.structutils.assignbondorders.assign_st
schrodinger.structutils.assignbondorders.calculate_average_angle
schrodinger.structutils.assignbondorders.calculate_dihedral
schrodinger.structutils.assignbondorders.debug
schrodinger.structutils.assignbondorders.debugbond
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schrodinger.structutils.assignbondorders.order_ring_or_chain
schrodinger.structutils.assignbondorders.orders_assigned
schrodinger.structutils.build._map_to_dict
schrodinger.structutils.build.add_hydrogens
schrodinger.structutils.build.attach_fragment
schrodinger.structutils.build.attach_structure
schrodinger.structutils.build.connect
schrodinger.structutils.build.delete_hydrogens
schrodinger.structutils.build.mutate
schrodinger.structutils.build.reorder_atoms
schrodinger.structutils.color._find_color_res_file
schrodinger.structutils.color._find_scheme_res_file
schrodinger.structutils.color._load_scheme_dict
schrodinger.structutils.color._parse_colors_file
schrodinger.structutils.color._parse_scheme_files
schrodinger.structutils.color._read_scheme_rules
schrodinger.structutils.color.apply_color_scheme
schrodinger.structutils.color.available_color_schemes
schrodinger.structutils.color.get_color_scheme
schrodinger.structutils.color.get_rgb_from_color_index
schrodinger.structutils.color.get_rgb_from_color_name
schrodinger.structutils.interactions.cation_coordinates
schrodinger.structutils.interactions.compute_catpi
schrodinger.structutils.interactions.find_aromatic_atoms
schrodinger.structutils.interactions.find_centroid
schrodinger.structutils.interactions.find_pi_cation_interactions
schrodinger.structutils.interactions.find_pi_pi_interactions
schrodinger.structutils.interactions.gather_rings
schrodinger.structutils.interactions.get_broken_residues
schrodinger.structutils.interactions.get_receptor_positive_centroids
schrodinger.structutils.interactions.make_nested_list
schrodinger.structutils.interactions.protein_dictionary
schrodinger.structutils.interactions.ring_centroid
schrodinger.structutils.interactions.squared_centroid_distance
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schrodinger.structutils.interactions.type_untyped_residue_cations
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schrodinger.structutils.minimize._minimizer_float_property
schrodinger.structutils.minimize._minimizer_int_property
schrodinger.structutils.minimize.get_converged
schrodinger.structutils.minimize.get_energy
schrodinger.structutils.minimize.get_rms_gradient
schrodinger.structutils.minimize.initialize
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schrodinger.structutils.minimize.terminate
schrodinger.structutils.rmsd._get_mmsym_map
schrodinger.structutils.rmsd.calculate_in_place_rmsd
schrodinger.structutils.rmsd.get_super_transformation_matrix
schrodinger.structutils.rmsd.superimpose
schrodinger.structutils.sitealign.get_ligand_asl
schrodinger.structutils.sitealign.get_residue_asl
schrodinger.structutils.smiles._determine_stereo_option
schrodinger.structutils.smiles._get_salt_list
schrodinger.structutils.smiles._keep_largest_molecule
schrodinger.structutils.smiles._translate_stereo_enum
schrodinger.structutils.smiles.desalt_smiles
schrodinger.structutils.smiles.get_property_name
schrodinger.structutils.smiles.remove_stereo_annotation
schrodinger.structutils.smilesfilter._main
schrodinger.structutils.smilesfilter._make_mae_writer
schrodinger.structutils.smilesfilter._make_smiles_writer
schrodinger.structutils.smilesfilter._parse_options
schrodinger.structutils.smilesfilter.add_smiles
schrodinger.structutils.smilesfilter.remove_dupes
schrodinger.structutils.sort._get_temp_file_name
schrodinger.structutils.sort._in_memory_sort_ok
schrodinger.structutils.sort.merge_files
schrodinger.structutils.sort.merge_pv_files
schrodinger.structutils.sort.merge_st_iters
schrodinger.structutils.sort.sort_file
schrodinger.structutils.sort.sort_file_in_memory
schrodinger.structutils.sort.split_file
schrodinger.structutils.transform.get_alignment_matrix
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schrodinger.structutils.transform.get_centroid
schrodinger.structutils.transform.get_coords_array_from_list
schrodinger.structutils.transform.get_normalized_vector
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schrodinger.structutils.transform.get_rotation_matrix_from_eulers
schrodinger.structutils.transform.get_translation_matrix
schrodinger.structutils.transform.get_vector_magnitude
schrodinger.structutils.transform.rotate_structure
schrodinger.structutils.transform.transform_atom_coordinates
schrodinger.structutils.transform.transform_structure
schrodinger.structutils.transform.translate_centroid_to_origin
schrodinger.structutils.transform.translate_structure
schrodinger.trajectory.analysis._find_connected_atom
schrodinger.trajectory.analysis._get_atoms
schrodinger.trajectory.analysis._get_connected_pair
schrodinger.trajectory.analysis._is_valid_atom
schrodinger.trajectory.analysis.get_phi_psi_atoms
schrodinger.trajectory.analysis.superimpose
schrodinger.trajectory.analyze_trajectories.assemble_energy_results
schrodinger.trajectory.analyze_trajectories.main
schrodinger.trajectory.analyze_trajectories.read_trj_idx_file
schrodinger.trajectory.analyze_trajectories.run
schrodinger.trajectory.analyze_trajectories.unique
schrodinger.trajectory.analyze_trajectories.write_error
schrodinger.trajectory.analyze_trajectories.write_log
schrodinger.trajectory.analyze_trajectories.write_warning
schrodinger.trajectory.cmsstructure.read_cms
schrodinger.trajectory.cmsstructure.write_cms
schrodinger.trajectory.desmondsimulation._create_simulation
schrodinger.trajectory.desmondsimulation.create_simulation
schrodinger.trajectory.desmondsimulation.get_fep_ct_indices
schrodinger.trajectory.desmondsimulation.get_fep_idx_map
schrodinger.trajectory.rmsd2d.calc_rmsd
schrodinger.trajectory.rmsd2d.calc_rmsd_matrix
schrodinger.trajectory.rmsd2d.calc_rmsd_matrix_block
schrodinger.trajectory.rmsd2d.load_frame
schrodinger.ui.appframework.jobname_valid
schrodinger.ui.chooseligand.choose_ligand
schrodinger.ui.chooseligand.test
schrodinger.ui.macromodel.jobparam_to_comutil
schrodinger.ui.qt.appframework._run_under_job_control
schrodinger.ui.qt.appframework.filter_string_from_supported
schrodinger.ui.qt.appframework.format_list_to_filter_string
schrodinger.ui.qt.appframework.get_workspace_structure
schrodinger.ui.qt.appframework.jobname_valid
schrodinger.ui.qt.appframework.question
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schrodinger.ui.qt.filedialog.base_file_dialog
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schrodinger.ui.qt.filedialog.get_existing_phase_database
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schrodinger.ui.qt.filedialog.get_open_file_name
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schrodinger.ui.qt.filedialog.get_save_file_name
schrodinger.ui.qt.filedialog.get_windows_drive_sidebar_links
schrodinger.ui.qt.filedialog.has_phasedb_ending
schrodinger.ui.qt.filedialog.has_project_ending
schrodinger.ui.qt.style.apply_style_sheet
schrodinger.ui.rama.quit
schrodinger.ui.widget.default._read_font_res
schrodinger.ui.widget.default.font_catcher
schrodinger.ui.widget.tkinterwidget.Pmw_initialise
schrodinger.ui.widget.tkinterwidget._setdir
schrodinger.ui.widget.tkinterwidget._update_options
schrodinger.ui.widget.tkinterwidget.askdirectory
schrodinger.ui.widget.tkinterwidget.askopenfilename
schrodinger.ui.widget.tkinterwidget.askopenfilenames
schrodinger.ui.widget.tkinterwidget.asksaveasfilename
schrodinger.utils.fileutils.create_hard_link
schrodinger.utils.fileutils.force_remove
schrodinger.utils.fileutils.force_rename
schrodinger.utils.fileutils.get_appdata_dir
schrodinger.utils.fileutils.get_basename
schrodinger.utils.fileutils.get_csidl_dir
schrodinger.utils.fileutils.get_desktop_dir
schrodinger.utils.fileutils.get_directory
schrodinger.utils.fileutils.get_home_dir
schrodinger.utils.fileutils.get_jobname
schrodinger.utils.fileutils.get_local_appdata_dir
schrodinger.utils.fileutils.get_mydocuments_dir
schrodinger.utils.fileutils.get_mynetworkplaces_dir
schrodinger.utils.fileutils.get_next_filename
schrodinger.utils.fileutils.get_next_filename_prefix
schrodinger.utils.fileutils.get_schrodinger_temp_dir
schrodinger.utils.fileutils.get_startup_dir
schrodinger.utils.fileutils.get_structure_file_format
schrodinger.utils.fileutils.get_userdata_dir
schrodinger.utils.fileutils.is_poseviewer_file
schrodinger.utils.fileutils.is_valid_jobname
schrodinger.utils.fileutils.splitext
schrodinger.utils.imputils.import_module_from_file
schrodinger.utils.ligfilter.Molecular_formula
schrodinger.utils.ligfilter.Molecular_weight
schrodinger.utils.ligfilter.Num_aliphatic_rings
schrodinger.utils.ligfilter.Num_aromatic_rings
schrodinger.utils.ligfilter.Num_atoms
schrodinger.utils.ligfilter.Num_chiral_centers
schrodinger.utils.ligfilter.Num_heavy_atoms
schrodinger.utils.ligfilter.Num_heteroaromatic_rings
schrodinger.utils.ligfilter.Num_molecules
schrodinger.utils.ligfilter.Num_negative_atoms
schrodinger.utils.ligfilter.Num_positive_atoms
schrodinger.utils.ligfilter.Num_residues
schrodinger.utils.ligfilter.Num_rings
schrodinger.utils.ligfilter.Num_rotatable_bonds
schrodinger.utils.ligfilter.Percent_helix
schrodinger.utils.ligfilter.Percent_loop
schrodinger.utils.ligfilter.Percent_strand
schrodinger.utils.ligfilter.Total_charge
schrodinger.utils.ligfilter._get_percent_ss_type
schrodinger.utils.ligfilter.generate_criterion
schrodinger.utils.ligfilter.get_default_criterion_parser
schrodinger.utils.ligfilter.mysplit
schrodinger.utils.ligfilter.read_keys
schrodinger.utils.ligfilter.st_matches_criteria
schrodinger.utils.moduleproxy.try_import
schrodinger.utils.openpdf.open_pdf
schrodinger.utils.openpdf.warning
schrodinger.utils.sea.__op_and
schrodinger.utils.sea.__op_at
schrodinger.utils.sea.__op_cat
schrodinger.utils.sea.__op_eq
schrodinger.utils.sea.__op_ge
schrodinger.utils.sea.__op_gt
schrodinger.utils.sea.__op_le
schrodinger.utils.sea.__op_lt
schrodinger.utils.sea.__op_minus
schrodinger.utils.sea.__op_mul
schrodinger.utils.sea.__op_not
schrodinger.utils.sea.__op_or
schrodinger.utils.sea.__op_sizeof
schrodinger.utils.sea._check_atom
schrodinger.utils.sea._check_list
schrodinger.utils.sea._check_map
schrodinger.utils.sea._debug_print
schrodinger.utils.sea._escape_dollar
schrodinger.utils.sea._escape_dollar2
schrodinger.utils.sea._eval
schrodinger.utils.sea._list_filter
schrodinger.utils.sea._match
schrodinger.utils.sea._strip_bracket
schrodinger.utils.sea._strip_bracket2
schrodinger.utils.sea._val_filter
schrodinger.utils.sea._xchk_dir_exists
schrodinger.utils.sea._xchk_file_exists
schrodinger.utils.sea._xchk_power2
schrodinger.utils.sea.asea_copy
schrodinger.utils.sea.boolean
schrodinger.utils.sea.check_map
schrodinger.utils.sea.check_map2
schrodinger.utils.sea.diff
schrodinger.utils.sea.expand_ark_string
schrodinger.utils.sea.expand_macro
schrodinger.utils.sea.expand_macro_old
schrodinger.utils.sea.expand_sea_string
schrodinger.utils.sea.filter
schrodinger.utils.sea.get_val
schrodinger.utils.sea.is_atom_list
schrodinger.utils.sea.is_equal
schrodinger.utils.sea.is_powerof2
schrodinger.utils.sea.pathname
schrodinger.utils.sea.reg_xcheck
schrodinger.utils.sea.test
schrodinger.utils.subprocess.Popen
schrodinger.utils.subprocess._fix_call_cmd
schrodinger.utils.subprocess.call
schrodinger.utils.system.get_memory_usage
schrodinger.utils.timers.main
schrodinger.utils.urllib.__init__
schrodinger.utils.urllib._set_tunnel
schrodinger.utils.urllib._tunnel
schrodinger.utils.urllib.do_open
schrodinger.utils.urllib.get_authorization
schrodinger.utils.urllib.get_opener
schrodinger.utils.urllib.get_proxy_config_file
schrodinger.utils.urllib.install_opener
schrodinger.version_at_least
schrodinger.version_at_most
schrodinger.version_compatible

All Variables

schrodinger.__package__
schrodinger.analysis.__package__
schrodinger.analysis.enrichment.SORT_CHOICES
schrodinger.analysis.enrichment.__package__
schrodinger.analysis.enrichment._version
schrodinger.analysis.enrichment.cmdline_doc
schrodinger.analysis.enrichment.in_maestro
schrodinger.analysis.enrichment.logger
schrodinger.antibody_db_manage_gui.DEFAULT_DB_PREF
schrodinger.antibody_db_manage_gui.DEFAULT_REGIONS
schrodinger.antibody_db_manage_gui.FLOAT_FORMAT
schrodinger.antibody_db_manage_gui.FR_DEFAULT
schrodinger.antibody_db_manage_gui.MAESTRO_TYPE
schrodinger.antibody_db_manage_gui.PDB
schrodinger.antibody_db_manage_gui.PREFERENCE_GROUP
schrodinger.antibody_db_manage_gui.READ_ONLY_COLOR
schrodinger.antibody_db_manage_gui.VH_DEFAULT
schrodinger.antibody_db_manage_gui.VL_DEFAULT
schrodinger.antibody_db_manage_gui.__doc__
schrodinger.antibody_db_manage_gui.__package__
schrodinger.antibody_db_manage_gui.maestro
schrodinger.antibody_db_manage_gui.my_usage
schrodinger.antibody_db_manage_gui.mypanel
schrodinger.application.__package__
schrodinger.application.bioluminate.__package__
schrodinger.application.bioluminate.actions.__package__
schrodinger.application.bioluminate.actions.configs.ALIGNMENT_ACTIONS
schrodinger.application.bioluminate.actions.configs.ANNOTATE_ACTIONS
schrodinger.application.bioluminate.actions.configs.COLOR_SEQUENCES
schrodinger.application.bioluminate.actions.configs.CONSENSUS_DISPLAY
schrodinger.application.bioluminate.actions.configs.FIND_PATTERN_ACTIONS
schrodinger.application.bioluminate.actions.configs.IMPORT_STRUCTURES
schrodinger.application.bioluminate.actions.configs.SEQUENCE_VIEWER
schrodinger.application.bioluminate.actions.configs.VIEWER_NAME_CONTEXT
schrodinger.application.bioluminate.actions.configs.VIEWER_SEQUENCE_CONTEXT
schrodinger.application.bioluminate.actions.configs.__package__
schrodinger.application.bioluminate.actions.factory.ACTION_NAME
schrodinger.application.bioluminate.actions.factory.SEPARATOR_RE
schrodinger.application.bioluminate.actions.factory.__package__
schrodinger.application.bioluminate.actions.icons.ADD
schrodinger.application.bioluminate.actions.icons.ALL_PROTEINS
schrodinger.application.bioluminate.actions.icons.CONSENSUS_LIGAND
schrodinger.application.bioluminate.actions.icons.DELETE
schrodinger.application.bioluminate.actions.icons.EYE
schrodinger.application.bioluminate.actions.icons.FOG
schrodinger.application.bioluminate.actions.icons.LIGAND
schrodinger.application.bioluminate.actions.icons.MSV_AVERAGE_COLORS
schrodinger.application.bioluminate.actions.icons.MSV_LEFT_ARROW
schrodinger.application.bioluminate.actions.icons.MSV_LOCK
schrodinger.application.bioluminate.actions.icons.MSV_LOCK_DOWNSTREAM
schrodinger.application.bioluminate.actions.icons.MSV_MARK_IDENTITIES
schrodinger.application.bioluminate.actions.icons.MSV_MODEL_3D
schrodinger.application.bioluminate.actions.icons.MSV_MULTIPLE_ALIGN
schrodinger.application.bioluminate.actions.icons.MSV_NEW
schrodinger.application.bioluminate.actions.icons.MSV_OPEN_FILE
schrodinger.application.bioluminate.actions.icons.MSV_PAIRWISE_ALIGN
schrodinger.application.bioluminate.actions.icons.MSV_REDO
schrodinger.application.bioluminate.actions.icons.MSV_RIGHT_ARROW
schrodinger.application.bioluminate.actions.icons.MSV_SAVE_FILE
schrodinger.application.bioluminate.actions.icons.MSV_UNDO
schrodinger.application.bioluminate.actions.icons.MSV_UNLOCK
schrodinger.application.bioluminate.actions.icons.MSV_WEIGHT_COLORS
schrodinger.application.bioluminate.actions.icons.MSV_WRAP
schrodinger.application.bioluminate.actions.icons.MSV_ZOOM_IN
schrodinger.application.bioluminate.actions.icons.MSV_ZOOM_OUT
schrodinger.application.bioluminate.actions.icons.SINGLE_PROTEIN
schrodinger.application.bioluminate.actions.icons.WATER
schrodinger.application.bioluminate.actions.icons.__package__
schrodinger.application.bioluminate.antibody.__package__
schrodinger.application.bioluminate.antibody.management.__package__
schrodinger.application.bioluminate.antibody.utils.DATABASE_TOKEN
schrodinger.application.bioluminate.antibody.utils.GENERAL_PREF_GROUP
schrodinger.application.bioluminate.antibody.utils.PREF_ACTIVE_DATABASES
schrodinger.application.bioluminate.antibody.utils.PREF_ALL_DATABASES
schrodinger.application.bioluminate.antibody.utils.__package__
schrodinger.application.bioluminate.antibody.utils.maestro
schrodinger.application.bioluminate.antibody.utils.preferences
schrodinger.application.bioluminate.antibody_utils.__package__
schrodinger.application.bioluminate.antibody_utils.maestro
schrodinger.application.bioluminate.bwidgets.__package__
schrodinger.application.bioluminate.license.BIOLUMINATE_MAIN
schrodinger.application.bioluminate.license.BIOLUMINATE_PROTEIN_DOCKING
schrodinger.application.bioluminate.license.BIOLUMINATE_SHARED
schrodinger.application.bioluminate.license.LICENSE_NAMES
schrodinger.application.bioluminate.license.LICENSE_TYPES
schrodinger.application.bioluminate.license.__package__
schrodinger.application.bioluminate.pml_menus.ATOM_BALLNSTICK
schrodinger.application.bioluminate.pml_menus.ATOM_NONE
schrodinger.application.bioluminate.pml_menus.ATOM_RAINBOW_COLORS
schrodinger.application.bioluminate.pml_menus.ATOM_WIRE
schrodinger.application.bioluminate.pml_menus.BACKBONE
schrodinger.application.bioluminate.pml_menus.BLUE
schrodinger.application.bioluminate.pml_menus.BOND_BALLNSTICK
schrodinger.application.bioluminate.pml_menus.BOND_NONE
schrodinger.application.bioluminate.pml_menus.BOND_WIRE
schrodinger.application.bioluminate.pml_menus.CALPHA_SCHEME
schrodinger.application.bioluminate.pml_menus.CARBON_COLOR
schrodinger.application.bioluminate.pml_menus.CARTOON
schrodinger.application.bioluminate.pml_menus.CHAIN_SCHEME
schrodinger.application.bioluminate.pml_menus.CPK
schrodinger.application.bioluminate.pml_menus.CYAN
schrodinger.application.bioluminate.pml_menus.DARK_BLUE
schrodinger.application.bioluminate.pml_menus.DARK_GREEN
schrodinger.application.bioluminate.pml_menus.DAVE_DEBUG
schrodinger.application.bioluminate.pml_menus.DEEPRED
schrodinger.application.bioluminate.pml_menus.DEEPTEAL
schrodinger.application.bioluminate.pml_menus.DISULFIDE
schrodinger.application.bioluminate.pml_menus.GREEN
schrodinger.application.bioluminate.pml_menus.GREY
schrodinger.application.bioluminate.pml_menus.HOTPINK
schrodinger.application.bioluminate.pml_menus.HYDROGEN_COLOR
schrodinger.application.bioluminate.pml_menus.INORGANIC
schrodinger.application.bioluminate.pml_menus.LIGHTBLUE
schrodinger.application.bioluminate.pml_menus.LIME
schrodinger.application.bioluminate.pml_menus.MAESTRO_TO_STRUCT_STYLE
schrodinger.application.bioluminate.pml_menus.MAGENTA
schrodinger.application.bioluminate.pml_menus.MAX_RECENT_COLORS
schrodinger.application.bioluminate.pml_menus.MMCT_TO_MAESTRO_RIBBON_STYLE
schrodinger.application.bioluminate.pml_menus.NONE
schrodinger.application.bioluminate.pml_menus.OBJECT_COLOR
schrodinger.application.bioluminate.pml_menus.OLIVE
schrodinger.application.bioluminate.pml_menus.ORANGE
schrodinger.application.bioluminate.pml_menus.PARTIAL_CHARGE_4D
schrodinger.application.bioluminate.pml_menus.PINK
schrodinger.application.bioluminate.pml_menus.PML_PRESET_SURFACE
schrodinger.application.bioluminate.pml_menus.PML_SURFACE
schrodinger.application.bioluminate.pml_menus.POLYMER
schrodinger.application.bioluminate.pml_menus.POSITION_SCHEME
schrodinger.application.bioluminate.pml_menus.PROT_AND_DNA_SELE
schrodinger.application.bioluminate.pml_menus.PYMOL_COLOR_CYCLE
schrodinger.application.bioluminate.pml_menus.PYMOL_IONS
schrodinger.application.bioluminate.pml_menus.RED
schrodinger.application.bioluminate.pml_menus.RIBBON_RAINBOW_COLORS
schrodinger.application.bioluminate.pml_menus.RIBBON_STYLE
schrodinger.application.bioluminate.pml_menus.RT_COLOR_LABEL_END
schrodinger.application.bioluminate.pml_menus.RT_COLOR_LABEL_START
schrodinger.application.bioluminate.pml_menus.RT_TO_MAESTRO_COLORS
schrodinger.application.bioluminate.pml_menus.SEAFOAM
schrodinger.application.bioluminate.pml_menus.SIDECHAIN
schrodinger.application.bioluminate.pml_menus.SLATE
schrodinger.application.bioluminate.pml_menus.SOLVENT
schrodinger.application.bioluminate.pml_menus.SOLVENT_AND_IONS
schrodinger.application.bioluminate.pml_menus.SURFACE_AREA_CUTOFF
schrodinger.application.bioluminate.pml_menus.THIN_TRACE
schrodinger.application.bioluminate.pml_menus.TRIGGERED
schrodinger.application.bioluminate.pml_menus.TUBE
schrodinger.application.bioluminate.pml_menus.WATER
schrodinger.application.bioluminate.pml_menus.WHITE
schrodinger.application.bioluminate.pml_menus.YELLOW
schrodinger.application.bioluminate.pml_menus.YELLOWORANGE
schrodinger.application.bioluminate.pml_menus.__package__
schrodinger.application.bioluminate.pml_menus.color_dict
schrodinger.application.bioluminate.pml_menus.color_file
schrodinger.application.bioluminate.pml_menus.color_path
schrodinger.application.bioluminate.pml_menus.colorfile
schrodinger.application.bioluminate.pml_menus.colorpath
schrodinger.application.bioluminate.pml_menus.custom_color_dicts
schrodinger.application.bioluminate.pml_menus.line
schrodinger.application.bioluminate.pml_menus.maestro
schrodinger.application.bioluminate.pml_menus.mmshare_data
schrodinger.application.bioluminate.pml_menus.object_color_cycles
schrodinger.application.bioluminate.pml_menus.pref_dir
schrodinger.application.bioluminate.pml_menus.results_window
schrodinger.application.bioluminate.pml_menus.rgb
schrodinger.application.bioluminate.pml_menus.rock_data
schrodinger.application.bioluminate.pml_menus.toggle_table
schrodinger.application.bioluminate.pml_menus.tokens
schrodinger.application.bioluminate.propfilter.AND
schrodinger.application.bioluminate.propfilter.BOOL_OPS
schrodinger.application.bioluminate.propfilter.CONTAINS
schrodinger.application.bioluminate.propfilter.ENDSWITH
schrodinger.application.bioluminate.propfilter.EQUALS
schrodinger.application.bioluminate.propfilter.EXISTS
schrodinger.application.bioluminate.propfilter.GREATER
schrodinger.application.bioluminate.propfilter.GREATEREQUAL
schrodinger.application.bioluminate.propfilter.IS_FALSE
schrodinger.application.bioluminate.propfilter.IS_TRUE
schrodinger.application.bioluminate.propfilter.LESSER
schrodinger.application.bioluminate.propfilter.LESSEREQUAL
schrodinger.application.bioluminate.propfilter.MUST_HAVE_VALUE
schrodinger.application.bioluminate.propfilter.NOT_CONTAINS
schrodinger.application.bioluminate.propfilter.NOT_EQUALS
schrodinger.application.bioluminate.propfilter.NOT_EXISTS
schrodinger.application.bioluminate.propfilter.NUMBER_OPS
schrodinger.application.bioluminate.propfilter.OR
schrodinger.application.bioluminate.propfilter.SELECT
schrodinger.application.bioluminate.propfilter.STARTSWITH
schrodinger.application.bioluminate.propfilter.STRING_OPS
schrodinger.application.bioluminate.propfilter.TEXTBOX_FONT
schrodinger.application.bioluminate.propfilter.__package__
schrodinger.application.bioluminate.propfilter_ui.__package__
schrodinger.application.bioluminate.protein.AA_1_LETTER_MAP
schrodinger.application.bioluminate.protein.AA_3_LETTER_MAP
schrodinger.application.bioluminate.protein.ACIDIC_RESIDUES
schrodinger.application.bioluminate.protein.AROMATIC_RESIDUES
schrodinger.application.bioluminate.protein.BASIC_RESIDUES
schrodinger.application.bioluminate.protein.CHARGED_RESIDUES
schrodinger.application.bioluminate.protein.HYDROPATHY_SCALE
schrodinger.application.bioluminate.protein.MUTATION_1_LETTER_RE
schrodinger.application.bioluminate.protein.MUTATION_3_LETTER_RE
schrodinger.application.bioluminate.protein.NEUTRAL_RESIDUES
schrodinger.application.bioluminate.protein.NONPOLAR_HEAVY_ELEMENTS
schrodinger.application.bioluminate.protein.NONPOLAR_RESIDUES
schrodinger.application.bioluminate.protein.POLAR_RESIDUES
schrodinger.application.bioluminate.protein.PROP_CONVERSIONS
schrodinger.application.bioluminate.protein.RESIDUE_ROTOR_COUNT
schrodinger.application.bioluminate.protein.__package__
schrodinger.application.bioluminate.protein._version
schrodinger.application.bioluminate.protein_report_widget.CLICKED
schrodinger.application.bioluminate.protein_report_widget.__doc__
schrodinger.application.bioluminate.protein_report_widget.__package__
schrodinger.application.bioluminate.protein_report_widget.maestro
schrodinger.application.bioluminate.protein_structure_quality.PRESETS
schrodinger.application.bioluminate.protein_structure_quality.PRESET_GCR
schrodinger.application.bioluminate.protein_structure_quality.PRESET_RT
schrodinger.application.bioluminate.protein_structure_quality.PRESET_RYW
schrodinger.application.bioluminate.protein_structure_quality.__doc__
schrodinger.application.bioluminate.protein_structure_quality.__package__
schrodinger.application.bioluminate.protein_structure_quality.maestro
schrodinger.application.bioluminate.protein_structure_quality_ui.__package__
schrodinger.application.bioluminate.sliderchart.COLOR_NAME
schrodinger.application.bioluminate.sliderchart.MARKER_TRANSLATION
schrodinger.application.bioluminate.sliderchart.__package__
schrodinger.application.bioluminate.sliderchart.app
schrodinger.application.bioluminate.sliderchart.frame
schrodinger.application.bioluminate.sliderchart.lines
schrodinger.application.bioluminate.sliderchart.x
schrodinger.application.bioluminate.sliderchart.y
schrodinger.application.bioluminate.sliderchart.y_err
schrodinger.application.bioluminate.ssv.__package__
schrodinger.application.bioluminate.ssv.toolbars.__package__
schrodinger.application.bioluminate.ssv.toolbars.maestro
schrodinger.application.bioluminate.ssv.viewer.__package__
schrodinger.application.bioluminate.ssv.viewer.maestro
schrodinger.application.canvas.__package__
schrodinger.application.canvas.base.__package__
schrodinger.application.canvas.cluster.__doc__
schrodinger.application.canvas.cluster.__package__
schrodinger.application.canvas.clustergui.__doc__
schrodinger.application.canvas.clustergui.__package__
schrodinger.application.canvas.clustergui.maestro
schrodinger.application.canvas.driverutils.__package__
schrodinger.application.canvas.fingerprint.__doc__
schrodinger.application.canvas.fingerprint.__package__
schrodinger.application.canvas.fingerprintgui.__doc__
schrodinger.application.canvas.fingerprintgui.__package__
schrodinger.application.canvas.similarity.__doc__
schrodinger.application.canvas.similarity.__package__
schrodinger.application.canvas.similaritygui.__doc__
schrodinger.application.canvas.similaritygui.__package__
schrodinger.application.canvas.utils.LICENSE_FULL
schrodinger.application.canvas.utils.LICENSE_FULL_OR_MAIN
schrodinger.application.canvas.utils.LICENSE_SHARED
schrodinger.application.canvas.utils.__package__
schrodinger.application.canvas.utils.full_lic
schrodinger.application.canvas.utils.full_or_main_lic
schrodinger.application.canvas.utils.shared_lic
schrodinger.application.combiglide.__package__
schrodinger.application.combiglide.corehop.__package__
schrodinger.application.combiglide.utils.__package__
schrodinger.application.desmond.__package__
schrodinger.application.desmond.ana.QUANTITY_CLASS_MAP
schrodinger.application.desmond.ana.__package__
schrodinger.application.desmond.ana.answer
schrodinger.application.desmond.ana.model_fname
schrodinger.application.desmond.ana.prob
schrodinger.application.desmond.ana.request
schrodinger.application.desmond.ana.traj_fname
schrodinger.application.desmond.antlr3.__package__
schrodinger.application.desmond.antlr3.compat.__package__
schrodinger.application.desmond.antlr3.constants.DEFAULT_CHANNEL
schrodinger.application.desmond.antlr3.constants.DOWN
schrodinger.application.desmond.antlr3.constants.EOF
schrodinger.application.desmond.antlr3.constants.EOR_TOKEN_TYPE
schrodinger.application.desmond.antlr3.constants.HIDDEN_CHANNEL
schrodinger.application.desmond.antlr3.constants.INVALID_TOKEN_TYPE
schrodinger.application.desmond.antlr3.constants.MIN_TOKEN_TYPE
schrodinger.application.desmond.antlr3.constants.UP
schrodinger.application.desmond.antlr3.constants.__package__
schrodinger.application.desmond.antlr3.debug.__package__
schrodinger.application.desmond.antlr3.dfa.__package__
schrodinger.application.desmond.antlr3.exceptions.__package__
schrodinger.application.desmond.antlr3.extras.__package__
schrodinger.application.desmond.antlr3.extras.exc
schrodinger.application.desmond.antlr3.recognizers.__package__
schrodinger.application.desmond.antlr3.streams.__package__
schrodinger.application.desmond.antlr3.tokens.EOF_TOKEN
schrodinger.application.desmond.antlr3.tokens.INVALID_TOKEN
schrodinger.application.desmond.antlr3.tokens.SKIP_TOKEN
schrodinger.application.desmond.antlr3.tokens.__package__
schrodinger.application.desmond.antlr3.tree.INVALID_NODE
schrodinger.application.desmond.antlr3.tree.__package__
schrodinger.application.desmond.antlr3.treewizard.ARG
schrodinger.application.desmond.antlr3.treewizard.BEGIN
schrodinger.application.desmond.antlr3.treewizard.COLON
schrodinger.application.desmond.antlr3.treewizard.DOT
schrodinger.application.desmond.antlr3.treewizard.END
schrodinger.application.desmond.antlr3.treewizard.EOF
schrodinger.application.desmond.antlr3.treewizard.ID
schrodinger.application.desmond.antlr3.treewizard.PERCENT
schrodinger.application.desmond.antlr3.treewizard.__package__
schrodinger.application.desmond.autopartition.__package__
schrodinger.application.desmond.cmj.CHECKPOINT_FNAME
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schrodinger.infra.mm.GLIDE_XPVIZ_HBSCT
schrodinger.infra.mm.GLIDE_XPVIZ_HEXPAIRS
schrodinger.infra.mm.GLIDE_XPVIZ_HEXPR_INDEX
schrodinger.infra.mm.GLIDE_XPVIZ_HEXSP
schrodinger.infra.mm.GLIDE_XPVIZ_HEXSPEC
schrodinger.infra.mm.GLIDE_XPVIZ_IHBL
schrodinger.infra.mm.GLIDE_XPVIZ_IHBP
schrodinger.infra.mm.GLIDE_XPVIZ_IPOTAT
schrodinger.infra.mm.GLIDE_XPVIZ_IPSPEC
schrodinger.infra.mm.GLIDE_XPVIZ_ISPEC1A
schrodinger.infra.mm.GLIDE_XPVIZ_ISPEC2A
schrodinger.infra.mm.GLIDE_XPVIZ_JPSPEC
schrodinger.infra.mm.GLIDE_XPVIZ_LIGNAME
schrodinger.infra.mm.GLIDE_XPVIZ_LIGNUM
schrodinger.infra.mm.GLIDE_XPVIZ_NEXPO
schrodinger.infra.mm.GLIDE_XPVIZ_NGPP
schrodinger.infra.mm.GLIDE_XPVIZ_NPENAL
schrodinger.infra.mm.GLIDE_XPVIZ_NPICATAT
schrodinger.infra.mm.GLIDE_XPVIZ_NPICATRES
schrodinger.infra.mm.GLIDE_XPVIZ_NRINGSTACK
schrodinger.infra.mm.GLIDE_XPVIZ_PACK_RES
schrodinger.infra.mm.GLIDE_XPVIZ_PACK_RESGROUP
schrodinger.infra.mm.GLIDE_XPVIZ_PACK_RESNUM
schrodinger.infra.mm.GLIDE_XPVIZ_PENALTIES
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMAT1
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMAT2
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMAT3
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMAT4
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_AMPEN
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_BLKPCHG
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_BLKPPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CHARGE
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CHGAT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CHGLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CHGPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CONTACT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CONTAT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CONTLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_CONTPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DDPEN
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DDPENLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DDPENPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DESOLVAT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DESOLVLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DONORAT1
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_DONORAT2
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_PHOBAT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_PHOBLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_PHOBPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_PHOBSC
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_POLAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_POLARAT
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_POLLIST
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_POLPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PENAL_TWISTAM
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBATGROUP
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBATSC
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBATSCAT
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBATSCPAR
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBCON_HB
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBCON_LIG
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBCON_PAR
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBCON_PROT
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBGROUPS
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBGROUP_NAT
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBGROUP_NRES
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBGROUP_PARAM
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBPACK
schrodinger.infra.mm.GLIDE_XPVIZ_PHOBSC
schrodinger.infra.mm.GLIDE_XPVIZ_PICAT
schrodinger.infra.mm.GLIDE_XPVIZ_PICATAT
schrodinger.infra.mm.GLIDE_XPVIZ_PICATATNUM
schrodinger.infra.mm.GLIDE_XPVIZ_PICATRES
schrodinger.infra.mm.GLIDE_XPVIZ_PICATRESNUM
schrodinger.infra.mm.GLIDE_XPVIZ_POSENUM
schrodinger.infra.mm.GLIDE_XPVIZ_ROTBONDAT1
schrodinger.infra.mm.GLIDE_XPVIZ_ROTBONDAT2
schrodinger.infra.mm.GLIDE_XPVIZ_ROTBONDS
schrodinger.infra.mm.GLIDE_XPVIZ_STACKING
schrodinger.infra.mm.GLIDE_XPVIZ_STACK_ATNUM
schrodinger.infra.mm.GLIDE_XPVIZ_STACK_ATOM
schrodinger.infra.mm.GLIDE_XPVIZ_STACK_RES
schrodinger.infra.mm.GLIDE_XPVIZ_STACK_RESNUM
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_LIGAND
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_LIGAT
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_LIGLIST
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_LIGPAR
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_PROTAT
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_PROTEIN
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_PROTLIST
schrodinger.infra.mm.GLIDE_XPVIZ_WATER_PROTPAR
schrodinger.infra.mm.GLIDE_XPVIZ_WATMOL
schrodinger.infra.mm.GLIDE_XPVIZ_WATMOLX
schrodinger.infra.mm.GLIDE_XPVIZ_WATMOLY
schrodinger.infra.mm.GLIDE_XPVIZ_WATMOLZ
schrodinger.infra.mm.GLIDE_XPVIZ_ZSTACK
schrodinger.infra.mm.GLIDE_XP_CL_BR_PACK
schrodinger.infra.mm.GLIDE_XP_ELECTRO
schrodinger.infra.mm.GLIDE_XP_GSCORE
schrodinger.infra.mm.GLIDE_XP_HBOND
schrodinger.infra.mm.GLIDE_XP_IMPVERS
schrodinger.infra.mm.GLIDE_XP_LIPOPHILIC_EVDW
schrodinger.infra.mm.GLIDE_XP_LOWMW
schrodinger.infra.mm.GLIDE_XP_PENALS
schrodinger.infra.mm.GLIDE_XP_PENAL_HB
schrodinger.infra.mm.GLIDE_XP_PENAL_PHOBIC
schrodinger.infra.mm.GLIDE_XP_PENAL_ROT
schrodinger.infra.mm.GLIDE_XP_PHOBEN
schrodinger.infra.mm.GLIDE_XP_PHOBEN_HB
schrodinger.infra.mm.GLIDE_XP_PHOBEN_PAIRHB
schrodinger.infra.mm.GLIDE_XP_PICAT
schrodinger.infra.mm.GLIDE_XP_PISTACK
schrodinger.infra.mm.GLIDE_XP_POSERANK
schrodinger.infra.mm.GLIDE_XP_SITEMAP
schrodinger.infra.mm.HYDROGENS
schrodinger.infra.mm.IMPACT
schrodinger.infra.mm.IMPACT_MAX_BASE_LENGTH
schrodinger.infra.mm.IMPACT_MAX_EXT_LENGTH
schrodinger.infra.mm.IMPACT_MAX_LINE_LENGTH
schrodinger.infra.mm.INDXFMT
schrodinger.infra.mm.JAGUAR
schrodinger.infra.mm.KNIME
schrodinger.infra.mm.M2IO_ALIGN_LEFT
schrodinger.infra.mm.M2IO_ALIGN_RIGHT
schrodinger.infra.mm.M2IO_ALL_TYPES
schrodinger.infra.mm.M2IO_APPEND
schrodinger.infra.mm.M2IO_BAD_INDEX
schrodinger.infra.mm.M2IO_BLOCK_ATOM
schrodinger.infra.mm.M2IO_BLOCK_BOND
schrodinger.infra.mm.M2IO_BLOCK_COMPRESSED_CT
schrodinger.infra.mm.M2IO_BLOCK_DEPEND
schrodinger.infra.mm.M2IO_BLOCK_FULL_CT
schrodinger.infra.mm.M2IO_BLOCK_WILDCARD_CT
schrodinger.infra.mm.M2IO_BOOLEAN_TYPE
schrodinger.infra.mm.M2IO_BOOLEAN_TYPES
schrodinger.infra.mm.M2IO_DATA_ALT_PDB_OCCUPANCY
schrodinger.infra.mm.M2IO_DATA_ALT_PDB_TFACTOR
schrodinger.infra.mm.M2IO_DATA_ALT_X_COORD
schrodinger.infra.mm.M2IO_DATA_ALT_Y_COORD
schrodinger.infra.mm.M2IO_DATA_ALT_Z_COORD
schrodinger.infra.mm.M2IO_DATA_ATOMIC_NUM
schrodinger.infra.mm.M2IO_DATA_ATOMIC_NUMBER
schrodinger.infra.mm.M2IO_DATA_ATOM_CHIRALITY
schrodinger.infra.mm.M2IO_DATA_ATOM_COUNTERPOISE
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_A1
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_A2
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_D
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_X
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_Y
schrodinger.infra.mm.M2IO_DATA_ATOM_FREEZE_Z
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_A1
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_A2
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_D
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_X
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_Y
schrodinger.infra.mm.M2IO_DATA_ATOM_HESSIAN_Z
schrodinger.infra.mm.M2IO_DATA_ATOM_LABEL_XOFFSET
schrodinger.infra.mm.M2IO_DATA_ATOM_LABEL_YOFFSET
schrodinger.infra.mm.M2IO_DATA_ATOM_NAME
schrodinger.infra.mm.M2IO_DATA_ATOM_NAMEP
schrodinger.infra.mm.M2IO_DATA_ATOM_REP
schrodinger.infra.mm.M2IO_DATA_ATOM_VISIBILITY
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_FREEZE_A1
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_FREEZE_A2
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_FREEZE_D
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_HESSIAN_A1
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_HESSIAN_A2
schrodinger.infra.mm.M2IO_DATA_ATOM_ZVAR_HESSIAN_D
schrodinger.infra.mm.M2IO_DATA_ATYPE
schrodinger.infra.mm.M2IO_DATA_BOND_FROM
schrodinger.infra.mm.M2IO_DATA_BOND_FROM_COLOR
schrodinger.infra.mm.M2IO_DATA_BOND_FROM_REP
schrodinger.infra.mm.M2IO_DATA_BOND_ORDER
schrodinger.infra.mm.M2IO_DATA_BOND_STEREO
schrodinger.infra.mm.M2IO_DATA_BOND_TO
schrodinger.infra.mm.M2IO_DATA_BOND_TO_COLOR
schrodinger.infra.mm.M2IO_DATA_BOND_TO_REP
schrodinger.infra.mm.M2IO_DATA_CHAIN
schrodinger.infra.mm.M2IO_DATA_CHARGE1
schrodinger.infra.mm.M2IO_DATA_CHARGE2
schrodinger.infra.mm.M2IO_DATA_COLOR
schrodinger.infra.mm.M2IO_DATA_COLOR_RGB
schrodinger.infra.mm.M2IO_DATA_COLUMN_DATA_NAME
schrodinger.infra.mm.M2IO_DATA_COLUMN_DESCRIPTION
schrodinger.infra.mm.M2IO_DATA_COLUMN_DISPLAY_PRECISION
schrodinger.infra.mm.M2IO_DATA_COLUMN_EDITABLE
schrodinger.infra.mm.M2IO_DATA_COLUMN_NAME
schrodinger.infra.mm.M2IO_DATA_COLUMN_NESTED
schrodinger.infra.mm.M2IO_DATA_COLUMN_PRINT_FORMAT
schrodinger.infra.mm.M2IO_DATA_COLUMN_SETTABLE
schrodinger.infra.mm.M2IO_DATA_COLUMN_UNITS
schrodinger.infra.mm.M2IO_DATA_COLUMN_VISIBLE
schrodinger.infra.mm.M2IO_DATA_COLUMN_WIDTH
schrodinger.infra.mm.M2IO_DATA_CT_ENTRY_ID
schrodinger.infra.mm.M2IO_DATA_CT_ENTRY_NAME
schrodinger.infra.mm.M2IO_DATA_CT_FILE_NAME
schrodinger.infra.mm.M2IO_DATA_CT_FILE_OFFSET_BEGIN
schrodinger.infra.mm.M2IO_DATA_CT_FILE_OFFSET_END
schrodinger.infra.mm.M2IO_DATA_CT_TITLE
schrodinger.infra.mm.M2IO_DATA_CURRENT_OCCUPANCY
schrodinger.infra.mm.M2IO_DATA_DEPEND_DEPENDENCY
schrodinger.infra.mm.M2IO_DATA_DEPEND_PROPERTY
schrodinger.infra.mm.M2IO_DATA_DISPLAY_ON_INCORPORATION
schrodinger.infra.mm.M2IO_DATA_FILE_BASENAME
schrodinger.infra.mm.M2IO_DATA_FILE_INDEX
schrodinger.infra.mm.M2IO_DATA_FILE_TITLE
schrodinger.infra.mm.M2IO_DATA_FORMAL_CHARGE
schrodinger.infra.mm.M2IO_DATA_GROW_NAME
schrodinger.infra.mm.M2IO_DATA_INSERTION_CODE
schrodinger.infra.mm.M2IO_DATA_IS_EXPANDED
schrodinger.infra.mm.M2IO_DATA_LABEL_COLOR
schrodinger.infra.mm.M2IO_DATA_LABEL_FORMAT
schrodinger.infra.mm.M2IO_DATA_LABEL_USER_TEXT
schrodinger.infra.mm.M2IO_DATA_MMOD_RES
schrodinger.infra.mm.M2IO_DATA_NESTING_LEVEL
schrodinger.infra.mm.M2IO_DATA_NOT_FOUND
schrodinger.infra.mm.M2IO_DATA_OBJECT_IN_WORKSPACE
schrodinger.infra.mm.M2IO_DATA_ORIGINAL_CMS_FILE
schrodinger.infra.mm.M2IO_DATA_PDB_ALTERNATE
schrodinger.infra.mm.M2IO_DATA_PDB_ATOM
schrodinger.infra.mm.M2IO_DATA_PDB_CONVERT_PROBLEM
schrodinger.infra.mm.M2IO_DATA_PDB_INSERTION_CODE
schrodinger.infra.mm.M2IO_DATA_PDB_OCCUPANCY
schrodinger.infra.mm.M2IO_DATA_PDB_RES
schrodinger.infra.mm.M2IO_DATA_PDB_TFACTOR
schrodinger.infra.mm.M2IO_DATA_RES_NUM
schrodinger.infra.mm.M2IO_DATA_RIBBON_COLOR
schrodinger.infra.mm.M2IO_DATA_RIBBON_COLOR_RGB
schrodinger.infra.mm.M2IO_DATA_RIBBON_STYLE
schrodinger.infra.mm.M2IO_DATA_ROW_SELECTED
schrodinger.infra.mm.M2IO_DATA_ROW_VISIBLE
schrodinger.infra.mm.M2IO_DATA_SECONDARY_STRUCTURE
schrodinger.infra.mm.M2IO_DATA_TEMPLATE_INDEX
schrodinger.infra.mm.M2IO_DATA_TRAJECTORY_FILE
schrodinger.infra.mm.M2IO_DATA_VERSION
schrodinger.infra.mm.M2IO_DATA_X_COORD
schrodinger.infra.mm.M2IO_DATA_Y_COORD
schrodinger.infra.mm.M2IO_DATA_Z_COORD
schrodinger.infra.mm.M2IO_DECIMAL_FORMAT
schrodinger.infra.mm.M2IO_DISK_FILE
schrodinger.infra.mm.M2IO_ENC
schrodinger.infra.mm.M2IO_EOF
schrodinger.infra.mm.M2IO_ERR
schrodinger.infra.mm.M2IO_EXPONENT_FORMAT
schrodinger.infra.mm.M2IO_GZIP
schrodinger.infra.mm.M2IO_INITIALIZATION_FILE
schrodinger.infra.mm.M2IO_INTEGER_TYPES
schrodinger.infra.mm.M2IO_INT_TYPE
schrodinger.infra.mm.M2IO_IN_CORE
schrodinger.infra.mm.M2IO_L_STRLEN
schrodinger.infra.mm.M2IO_MMIO_FILE
schrodinger.infra.mm.M2IO_NOT_READING
schrodinger.infra.mm.M2IO_NOT_WRITING
schrodinger.infra.mm.M2IO_NO_CURRENT_BLOCK
schrodinger.infra.mm.M2IO_NO_FULL_BLOCK
schrodinger.infra.mm.M2IO_NO_VALUE
schrodinger.infra.mm.M2IO_OK
schrodinger.infra.mm.M2IO_READ
schrodinger.infra.mm.M2IO_READ_FORWARD
schrodinger.infra.mm.M2IO_REAL_TYPE
schrodinger.infra.mm.M2IO_REAL_TYPES
schrodinger.infra.mm.M2IO_ROW_INVALID
schrodinger.infra.mm.M2IO_STRING
schrodinger.infra.mm.M2IO_STRING_TYPE
schrodinger.infra.mm.M2IO_STRING_TYPES
schrodinger.infra.mm.M2IO_VERSION
schrodinger.infra.mm.M2IO_WRITE
schrodinger.infra.mm.M2IO_WRITE_TO_BUFFER
schrodinger.infra.mm.M2IO_WRITE_V11
schrodinger.infra.mm.MACROMODEL
schrodinger.infra.mm.MAESTRO
schrodinger.infra.mm.MAP_ALL
schrodinger.infra.mm.MAP_MMMRBS
schrodinger.infra.mm.MAP_MMMS
schrodinger.infra.mm.MAX_ATOM_TYPES
schrodinger.infra.mm.MAX_LINE_LEN
schrodinger.infra.mm.MAX_NCT_ATOMS
schrodinger.infra.mm.MAX_RANK
schrodinger.infra.mm.MAX_SYMMETRY_LABEL
schrodinger.infra.mm.MCPRO
schrodinger.infra.mm.MMALIGN_BLOSUM62
schrodinger.infra.mm.MMALIGN_DEBUG
schrodinger.infra.mm.MMALIGN_ERROR
schrodinger.infra.mm.MMALIGN_FATAL
schrodinger.infra.mm.MMALIGN_INFO
schrodinger.infra.mm.MMALIGN_INVALID_ALIGNMENT
schrodinger.infra.mm.MMALIGN_OK
schrodinger.infra.mm.MMALIGN_WARNING
schrodinger.infra.mm.MMASL_BEYOND_SET
schrodinger.infra.mm.MMASL_DONE
schrodinger.infra.mm.MMASL_ERR
schrodinger.infra.mm.MMASL_FATAL_ERR
schrodinger.infra.mm.MMASL_OK
schrodinger.infra.mm.MMASL_RANGE_ERR
schrodinger.infra.mm.MMASL_SPECIAL
schrodinger.infra.mm.MMASL_WITHINPOS_X
schrodinger.infra.mm.MMASL_WITHINPOS_Y
schrodinger.infra.mm.MMASL_WITHINPOS_Z
schrodinger.infra.mm.MMASL_WITHIN_SET
schrodinger.infra.mm.MMAT_CUBIC
schrodinger.infra.mm.MMAT_ELEVEN_COORDINATE
schrodinger.infra.mm.MMAT_ERR
schrodinger.infra.mm.MMAT_FIFTEEN_COORDINATE
schrodinger.infra.mm.MMAT_FOURTEEN_COORDINATE
schrodinger.infra.mm.MMAT_LINEAR
schrodinger.infra.mm.MMAT_NINE_COORDINATE
schrodinger.infra.mm.MMAT_NOT_CENTRAL_ATOM
schrodinger.infra.mm.MMAT_OCTAHEDRAL
schrodinger.infra.mm.MMAT_OK
schrodinger.infra.mm.MMAT_PENTAGONAL_BIPYRAMIDAL
schrodinger.infra.mm.MMAT_SIXTEEN_COORDINATE
schrodinger.infra.mm.MMAT_TEN_COORDINATE
schrodinger.infra.mm.MMAT_TETRAHEDRAL
schrodinger.infra.mm.MMAT_THIRTEEN_COORDINATE
schrodinger.infra.mm.MMAT_TRIGONAL
schrodinger.infra.mm.MMAT_TRIGONAL_BIPYRAMIDAL
schrodinger.infra.mm.MMAT_TWELVE_COORDINATE
schrodinger.infra.mm.MMBS_ERR
schrodinger.infra.mm.MMBS_OK
schrodinger.infra.mm.MMBUILD_ATOM_LIST_PROBLEM
schrodinger.infra.mm.MMBUILD_ERROR
schrodinger.infra.mm.MMBUILD_GROW_BOND_PROBLEM
schrodinger.infra.mm.MMBUILD_NO_CONNECTION_ATOMS
schrodinger.infra.mm.MMBUILD_OK
schrodinger.infra.mm.MMBUILD_VALENCE_ERROR
schrodinger.infra.mm.MMCANON_ERR
schrodinger.infra.mm.MMCANON_OK
schrodinger.infra.mm.MMCELL_DEBUG
schrodinger.infra.mm.MMCELL_ERROR
schrodinger.infra.mm.MMCELL_FATAL
schrodinger.infra.mm.MMCELL_INFO
schrodinger.infra.mm.MMCELL_OK
schrodinger.infra.mm.MMCELL_WARNING
schrodinger.infra.mm.MMCOLOR_ERROR
schrodinger.infra.mm.MMCOLOR_INVALID_HANDLE
schrodinger.infra.mm.MMCOLOR_MAXIMUM_SLOTS
schrodinger.infra.mm.MMCOLOR_OK
schrodinger.infra.mm.MMCOMB_BAD_PARAMETER
schrodinger.infra.mm.MMCOMB_BUILD_FAILURE
schrodinger.infra.mm.MMCOMB_END_OF_LIB
schrodinger.infra.mm.MMCOMB_ERROR
schrodinger.infra.mm.MMCOMB_INDEX_OVERFLOW
schrodinger.infra.mm.MMCOMB_MEMORY
schrodinger.infra.mm.MMCOMB_NODE_OMITTED
schrodinger.infra.mm.MMCOMB_NO_CURRENT
schrodinger.infra.mm.MMCOMB_OK
schrodinger.infra.mm.MMCOMB_SPEC_DONE
schrodinger.infra.mm.MMCOMB_SPEC_GROWTH
schrodinger.infra.mm.MMCOMB_SPEC_NODE
schrodinger.infra.mm.MMCOMB_SPEC_PARTIAL
schrodinger.infra.mm.MMCOMB_UNINITIALIZED
schrodinger.infra.mm.MMCOMMON_ERROR
schrodinger.infra.mm.MMCOMMON_OK
schrodinger.infra.mm.MMCRYSTAL_ERROR
schrodinger.infra.mm.MMCRYSTAL_INVALID_TAG
schrodinger.infra.mm.MMCRYSTAL_OK
schrodinger.infra.mm.MMCT_ALL
schrodinger.infra.mm.MMCT_ATOMS_ALL
schrodinger.infra.mm.MMCT_ATOM_BALLNSTICK
schrodinger.infra.mm.MMCT_ATOM_CIRCLE
schrodinger.infra.mm.MMCT_ATOM_CPK
schrodinger.infra.mm.MMCT_ATOM_NAME_CHAIN_RESIDUE_NUMBER
schrodinger.infra.mm.MMCT_ATOM_NAME_ELEMENT
schrodinger.infra.mm.MMCT_ATOM_NAME_NUMBER
schrodinger.infra.mm.MMCT_ATOM_NAME_PDB_ATOM_NAME
schrodinger.infra.mm.MMCT_ATOM_NOSTYLE
schrodinger.infra.mm.MMCT_ATOM_PROPERTY_NOT_DEFINED_IN_CT
schrodinger.infra.mm.MMCT_ATOM_PROPERTY_UNDEFINED_ATOM
schrodinger.infra.mm.MMCT_ATOM_SELECTED
schrodinger.infra.mm.MMCT_BONDS_ATOM_ALL
schrodinger.infra.mm.MMCT_BONDS_CT_ALL
schrodinger.infra.mm.MMCT_BOND_BALLNSTICK
schrodinger.infra.mm.MMCT_BOND_NOSTYLE
schrodinger.infra.mm.MMCT_BOND_PROPERTY_NEVER_DEFINED_IN_SESSION
schrodinger.infra.mm.MMCT_BOND_PROPERTY_UNDEFINED_BOND
schrodinger.infra.mm.MMCT_BOND_PROP_ZOB_TRAVERSE
schrodinger.infra.mm.MMCT_BOND_TUBE
schrodinger.infra.mm.MMCT_BOND_WIRE
schrodinger.infra.mm.MMCT_CHECKING
schrodinger.infra.mm.MMCT_COLOR_NONE
schrodinger.infra.mm.MMCT_CONN
schrodinger.infra.mm.MMCT_DEBUG
schrodinger.infra.mm.MMCT_DEPEND_ON_CONNECTIVITY
schrodinger.infra.mm.MMCT_DEPEND_ON_COORDINATE
schrodinger.infra.mm.MMCT_DEPEND_ON_GEOMETRY
schrodinger.infra.mm.MMCT_DIFF_ATOMIC_NUMBER
schrodinger.infra.mm.MMCT_DIFF_ATOMNAME
schrodinger.infra.mm.MMCT_DIFF_ATOM_PROPERTIES
schrodinger.infra.mm.MMCT_DIFF_BONDED
schrodinger.infra.mm.MMCT_DIFF_BONDORDER
schrodinger.infra.mm.MMCT_DIFF_BOND_PROPERTIES
schrodinger.infra.mm.MMCT_DIFF_CHAIN
schrodinger.infra.mm.MMCT_DIFF_CHARGE1
schrodinger.infra.mm.MMCT_DIFF_CHARGE2
schrodinger.infra.mm.MMCT_DIFF_CHARGEF
schrodinger.infra.mm.MMCT_DIFF_COLOR
schrodinger.infra.mm.MMCT_DIFF_GROWNAME
schrodinger.infra.mm.MMCT_DIFF_LABEL_COLOR
schrodinger.infra.mm.MMCT_DIFF_LABEL_FORMAT
schrodinger.infra.mm.MMCT_DIFF_LABEL_USER_TEXT
schrodinger.infra.mm.MMCT_DIFF_MOL_ATOM
schrodinger.infra.mm.MMCT_DIFF_PDBNAME
schrodinger.infra.mm.MMCT_DIFF_PDBRES
schrodinger.infra.mm.MMCT_DIFF_PDBRES_SUFFIX
schrodinger.infra.mm.MMCT_DIFF_RES
schrodinger.infra.mm.MMCT_DIFF_RESNUM
schrodinger.infra.mm.MMCT_DIFF_RIBBON_COLOR
schrodinger.infra.mm.MMCT_DIFF_RIBBON_STYLE
schrodinger.infra.mm.MMCT_DIFF_SS_TYPE
schrodinger.infra.mm.MMCT_DIFF_STYLE
schrodinger.infra.mm.MMCT_DIFF_TEMPLATE_INDEX
schrodinger.infra.mm.MMCT_DIFF_TYPE
schrodinger.infra.mm.MMCT_DIFF_VISIBLE
schrodinger.infra.mm.MMCT_DIFF_XYZ
schrodinger.infra.mm.MMCT_DOUBLE
schrodinger.infra.mm.MMCT_EOF
schrodinger.infra.mm.MMCT_ERROR
schrodinger.infra.mm.MMCT_ERROR_REPORTING
schrodinger.infra.mm.MMCT_FATAL
schrodinger.infra.mm.MMCT_FULL
schrodinger.infra.mm.MMCT_INFO
schrodinger.infra.mm.MMCT_INVALID_CT
schrodinger.infra.mm.MMCT_INVALID_ID_MAP
schrodinger.infra.mm.MMCT_LESS_ATOMS
schrodinger.infra.mm.MMCT_MANUAL_UPDATE
schrodinger.infra.mm.MMCT_MAXBOND
schrodinger.infra.mm.MMCT_MAXGROWLEN
schrodinger.infra.mm.MMCT_MAXGROWSIZE
schrodinger.infra.mm.MMCT_MAXPDBLEN
schrodinger.infra.mm.MMCT_MAXPDBSIZE
schrodinger.infra.mm.MMCT_MORE_ATOMS
schrodinger.infra.mm.MMCT_NONE
schrodinger.infra.mm.MMCT_NO_TRAVERSE_ZERO
schrodinger.infra.mm.MMCT_NUM_CANONICAL_NAMING_OPTIONS
schrodinger.infra.mm.MMCT_OK
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_ATLOC
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_DEFAULT
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_MISSING_ATOM
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_MISSING_RESIDUE
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_UNKNOWN_NAME
schrodinger.infra.mm.MMCT_PDB_CONVERT_PROBLEM_UNRECOGNIZED
schrodinger.infra.mm.MMCT_RIBBON_STYLE_CALINE
schrodinger.infra.mm.MMCT_RIBBON_STYLE_CARTOON
schrodinger.infra.mm.MMCT_RIBBON_STYLE_CATUBE
schrodinger.infra.mm.MMCT_RIBBON_STYLE_CURVELINE
schrodinger.infra.mm.MMCT_RIBBON_STYLE_NONE
schrodinger.infra.mm.MMCT_RIBBON_STYLE_RIBBON
schrodinger.infra.mm.MMCT_RIBBON_STYLE_THINTUBE
schrodinger.infra.mm.MMCT_RIBBON_STYLE_TUBE
schrodinger.infra.mm.MMCT_SAME
schrodinger.infra.mm.MMCT_SINGLE
schrodinger.infra.mm.MMCT_SS_HELIX
schrodinger.infra.mm.MMCT_SS_LOOP
schrodinger.infra.mm.MMCT_SS_NONE
schrodinger.infra.mm.MMCT_SS_STRAND
schrodinger.infra.mm.MMCT_SS_TURN
schrodinger.infra.mm.MMCT_TITLE_LEN
schrodinger.infra.mm.MMCT_TITLE_SIZE
schrodinger.infra.mm.MMCT_TRAVERSE_ZERO
schrodinger.infra.mm.MMCT_TRAVERSE_ZOB
schrodinger.infra.mm.MMCT_TRIPLE
schrodinger.infra.mm.MMCT_UPDATE_ADDITIONS
schrodinger.infra.mm.MMCT_UPDATE_DELETIONS
schrodinger.infra.mm.MMCT_WARNING
schrodinger.infra.mm.MMCT_WRITE_RGB_IF_AVAILABLE
schrodinger.infra.mm.MMCT_XYZ
schrodinger.infra.mm.MMCT_ZERO
schrodinger.infra.mm.MMERR_BUMMER
schrodinger.infra.mm.MMERR_DEBUG
schrodinger.infra.mm.MMERR_DEFAULT_HANDLER
schrodinger.infra.mm.MMERR_FATAL
schrodinger.infra.mm.MMERR_INFO
schrodinger.infra.mm.MMERR_OFF
schrodinger.infra.mm.MMERR_OK
schrodinger.infra.mm.MMERR_WARNING
schrodinger.infra.mm.MMESL_ERR
schrodinger.infra.mm.MMESL_OK
schrodinger.infra.mm.MMFEPIO_BOOLEAN
schrodinger.infra.mm.MMFEPIO_CHAR
schrodinger.infra.mm.MMFEPIO_DOUBLE
schrodinger.infra.mm.MMFEPIO_ERR
schrodinger.infra.mm.MMFEPIO_INTEGER
schrodinger.infra.mm.MMFEPIO_MAP_MODE
schrodinger.infra.mm.MMFEPIO_OK
schrodinger.infra.mm.MMFEPIO_UNDEF
schrodinger.infra.mm.MMFEPIO_WARNING
schrodinger.infra.mm.MMFFIO_BOOLEAN
schrodinger.infra.mm.MMFFIO_CHAR
schrodinger.infra.mm.MMFFIO_DOUBLE
schrodinger.infra.mm.MMFFIO_ERR
schrodinger.infra.mm.MMFFIO_INTEGER
schrodinger.infra.mm.MMFFIO_OK
schrodinger.infra.mm.MMFFIO_UNDEF
schrodinger.infra.mm.MMFFIO_WARNING
schrodinger.infra.mm.MMFFLD_ERR
schrodinger.infra.mm.MMFFLD_MAX_ATOM_EXCLUSION
schrodinger.infra.mm.MMFFLD_MAX_V_TERM
schrodinger.infra.mm.MMFFLD_OK
schrodinger.infra.mm.MMFILE_COPY_HARDLINK
schrodinger.infra.mm.MMFILE_COPY_REGULAR
schrodinger.infra.mm.MMFILE_COPY_SYMLINK
schrodinger.infra.mm.MMFILE_DIR
schrodinger.infra.mm.MMFILE_DRIVESEP
schrodinger.infra.mm.MMFILE_DRIVESEP_UNIX
schrodinger.infra.mm.MMFILE_DRIVESEP_WIN32
schrodinger.infra.mm.MMFILE_ERROR
schrodinger.infra.mm.MMFILE_FILE
schrodinger.infra.mm.MMFILE_FILESEP
schrodinger.infra.mm.MMFILE_FILESEP_UNIX
schrodinger.infra.mm.MMFILE_FILESEP_WIN32
schrodinger.infra.mm.MMFILE_NO_MORE_FILES
schrodinger.infra.mm.MMFILE_OK
schrodinger.infra.mm.MMFILE_PATHSEP
schrodinger.infra.mm.MMFILE_PATH_COMBIGLIDE
schrodinger.infra.mm.MMFILE_PATH_DESMOND
schrodinger.infra.mm.MMFILE_PATH_JAGUAR_DATA
schrodinger.infra.mm.MMFILE_PATH_MACROMODEL
schrodinger.infra.mm.MMFILE_PATH_MAESTRO_DATA
schrodinger.infra.mm.MMFILE_PATH_MMSHARE_DATA
schrodinger.infra.mm.MMFILE_PATH_PSP_DATA
schrodinger.infra.mm.MMFILE_PATH_QIKPROP
schrodinger.infra.mm.MMFRAG_BASE_FROM
schrodinger.infra.mm.MMFRAG_CAP_SETS_1
schrodinger.infra.mm.MMFRAG_DONE
schrodinger.infra.mm.MMFRAG_ERROR
schrodinger.infra.mm.MMFRAG_GROW_BOND_NOT_FOUND
schrodinger.infra.mm.MMFRAG_INCREMENT
schrodinger.infra.mm.MMFRAG_NOTFOUND
schrodinger.infra.mm.MMFRAG_OK
schrodinger.infra.mm.MMFRAG_PROMPT
schrodinger.infra.mm.MMFRAG_TRUNCATION
schrodinger.infra.mm.MMFfldA12scale
schrodinger.infra.mm.MMFfldAEXP
schrodinger.infra.mm.MMFfldANGRESTENE
schrodinger.infra.mm.MMFfldAllConsType
schrodinger.infra.mm.MMFfldAllRestType
schrodinger.infra.mm.MMFfldAngleCons
schrodinger.infra.mm.MMFfldAngleRest
schrodinger.infra.mm.MMFfldBNDType
schrodinger.infra.mm.MMFfldBND_ENE
schrodinger.infra.mm.MMFfldDSTLOWERRESTENE
schrodinger.infra.mm.MMFfldDSTRESTENE
schrodinger.infra.mm.MMFfldDSTUPPERRESTENE
schrodinger.infra.mm.MMFfldDistCons
schrodinger.infra.mm.MMFfldDistLowerBoundDistRest
schrodinger.infra.mm.MMFfldDistRest
schrodinger.infra.mm.MMFfldDistUpperBoundDistRest
schrodinger.infra.mm.MMFfldELE14_ENE
schrodinger.infra.mm.MMFfldELE_ENE
schrodinger.infra.mm.MMFfldEPSILON
schrodinger.infra.mm.MMFfldExpType
schrodinger.infra.mm.MMFfldIMPTORType
schrodinger.infra.mm.MMFfldIMP_ENE
schrodinger.infra.mm.MMFfldLJ14_ENE
schrodinger.infra.mm.MMFfldLJType
schrodinger.infra.mm.MMFfldLJ_ENE
schrodinger.infra.mm.MMFfldMAX_ENE
schrodinger.infra.mm.MMFfldMinAUTO
schrodinger.infra.mm.MMFfldMinBFGS
schrodinger.infra.mm.MMFfldMinCG
schrodinger.infra.mm.MMFfldN14PAIR
schrodinger.infra.mm.MMFfldNATOM
schrodinger.infra.mm.MMFfldNBCI
schrodinger.infra.mm.MMFfldNBND
schrodinger.infra.mm.MMFfldNIMPTOR
schrodinger.infra.mm.MMFfldNLJPARA
schrodinger.infra.mm.MMFfldNSTR
schrodinger.infra.mm.MMFfldNTOR
schrodinger.infra.mm.MMFfldNspecialVdwComb
schrodinger.infra.mm.MMFfldOption_ENE_CHARGES_FROM_CT
schrodinger.infra.mm.MMFfldOption_ENE_DIELECTRIC
schrodinger.infra.mm.MMFfldOption_ENE_LJ_REPULSIVE_ONLY
schrodinger.infra.mm.MMFfldOption_ENE_NO_ELE
schrodinger.infra.mm.MMFfldOption_ENE_NO_FORCES
schrodinger.infra.mm.MMFfldOption_ENE_USE_EXP
schrodinger.infra.mm.MMFfldOption_MIN_CONV_ENER
schrodinger.infra.mm.MMFfldOption_MIN_CONV_GRAD
schrodinger.infra.mm.MMFfldOption_MIN_MAX_STEP
schrodinger.infra.mm.MMFfldOption_MIN_METHOD
schrodinger.infra.mm.MMFfldOption_MIN_VERBOSE
schrodinger.infra.mm.MMFfldOption_OPT_BAD_STR_SAVE
schrodinger.infra.mm.MMFfldOption_OPT_BMIN_SAVE
schrodinger.infra.mm.MMFfldOption_OPT_CGEN_MAE
schrodinger.infra.mm.MMFfldOption_OPT_CM1ABCC_REQUIRED
schrodinger.infra.mm.MMFfldOption_OPT_MMCONF_TORSION
schrodinger.infra.mm.MMFfldOption_OPT_NO_BMIN_IN_CM1ABCC
schrodinger.infra.mm.MMFfldOption_OPT_NO_BND_WATER_MODELS
schrodinger.infra.mm.MMFfldOption_OPT_NO_CGEN_IN_CM1ABCC
schrodinger.infra.mm.MMFfldOption_OPT_NO_CM1ABCC
schrodinger.infra.mm.MMFfldOption_OPT_NO_MMNDDO_IN_CM1ABCC
schrodinger.infra.mm.MMFfldOption_OPT_NO_STR_CLEANUP_CM1ABCC
schrodinger.infra.mm.MMFfldOption_SYS_ALPHA
schrodinger.infra.mm.MMFfldOption_SYS_BETA
schrodinger.infra.mm.MMFfldOption_SYS_BX
schrodinger.infra.mm.MMFfldOption_SYS_BY
schrodinger.infra.mm.MMFfldOption_SYS_BZ
schrodinger.infra.mm.MMFfldOption_SYS_CUTOFF
schrodinger.infra.mm.MMFfldOption_SYS_CUTOFF_OUTER
schrodinger.infra.mm.MMFfldOption_SYS_CUTOFF_SHORT
schrodinger.infra.mm.MMFfldOption_SYS_GAMMA
schrodinger.infra.mm.MMFfldOption_SYS_GROUP_PAIR_LIST
schrodinger.infra.mm.MMFfldOption_SYS_NO_PAIR_LIST_UPDATE
schrodinger.infra.mm.MMFfldOption_SYS_TRICLINIC
schrodinger.infra.mm.MMFfldOption_TYPER_ADD_ATOM_TYPES_TO_CT
schrodinger.infra.mm.MMFfldOption_TYPER_AVOID_DUMMIES
schrodinger.infra.mm.MMFfldOption_TYPER_BEND_CONJ_AMINES
schrodinger.infra.mm.MMFfldOption_TYPER_BEND_CONJ_AMINES_IN_CM1ABCC
schrodinger.infra.mm.MMFfldOption_TYPER_GEN_UTT_FILE
schrodinger.infra.mm.MMFfldOption_TYPER_GIVE_B_VALUES
schrodinger.infra.mm.MMFfldOption_TYPER_GIVE_TORFIT_INFO
schrodinger.infra.mm.MMFfldOption_TYPER_NO_RESTRAIN_ZOB
schrodinger.infra.mm.MMFfldOption_TYPER_PFF_SYM_NUMERICAL_TYPE
schrodinger.infra.mm.MMFfldOption_TYPER_PLANAR_SC_BEND
schrodinger.infra.mm.MMFfldOption_TYPER_PLANAR_SC_ENABLE
schrodinger.infra.mm.MMFfldOption_TYPER_PLANAR_SC_IMPR_TOR
schrodinger.infra.mm.MMFfldOption_TYPER_PLANAR_SC_PROP_TOR
schrodinger.infra.mm.MMFfldOption_TYPER_PRINT_DETAILS
schrodinger.infra.mm.MMFfldOption_TYPER_PRINT_PARAMETERS_IN_CM1ABCC
schrodinger.infra.mm.MMFfldOption_TYPER_REQUIRE_F16_PRINT_LIC
schrodinger.infra.mm.MMFfldOption_TYPER_USE_UTT
schrodinger.infra.mm.MMFfldOption_TYPER_genSGBNP
schrodinger.infra.mm.MMFfldPOSRESTENE
schrodinger.infra.mm.MMFfldPosFrozen
schrodinger.infra.mm.MMFfldPosRest
schrodinger.infra.mm.MMFfldSIGMA
schrodinger.infra.mm.MMFfldSIGMAEXP
schrodinger.infra.mm.MMFfldSTRType
schrodinger.infra.mm.MMFfldSTR_ENE
schrodinger.infra.mm.MMFfldTORRESTENE
schrodinger.infra.mm.MMFfldTORType
schrodinger.infra.mm.MMFfldTOR_ENE
schrodinger.infra.mm.MMFfldTOT_ENE
schrodinger.infra.mm.MMFfldTorsionCons
schrodinger.infra.mm.MMFfldTorsionCoordCons
schrodinger.infra.mm.MMFfldTorsionRest
schrodinger.infra.mm.MMHTREAT_ERROR
schrodinger.infra.mm.MMHTREAT_OK
schrodinger.infra.mm.MMIDEAL_ERROR
schrodinger.infra.mm.MMIDEAL_FATAL
schrodinger.infra.mm.MMIDEAL_INFO
schrodinger.infra.mm.MMIDEAL_LINEAR
schrodinger.infra.mm.MMIDEAL_OK
schrodinger.infra.mm.MMIDEAL_TETRAHEDRAL
schrodinger.infra.mm.MMIDEAL_TRIGONAL
schrodinger.infra.mm.MMIDEAL_WARNING
schrodinger.infra.mm.MMIM_ALL_JOB
schrodinger.infra.mm.MMIM_ANALYSIS_JOB
schrodinger.infra.mm.MMIM_ANAL_ANALENERGY
schrodinger.infra.mm.MMIM_ANAL_ANALSURFACE
schrodinger.infra.mm.MMIM_ANAL_ATOMSURTYPE
schrodinger.infra.mm.MMIM_ANAL_RADIUSPROBE
schrodinger.infra.mm.MMIM_ANAL_REPANGLE
schrodinger.infra.mm.MMIM_ANAL_REPBOND
schrodinger.infra.mm.MMIM_ANAL_REPNONBOND
schrodinger.infra.mm.MMIM_ANAL_REPNONBOND14
schrodinger.infra.mm.MMIM_ANAL_REPORTYPE
schrodinger.infra.mm.MMIM_ANAL_REPTORSION
schrodinger.infra.mm.MMIM_ARG_BOOL_ARRAY_BEGIN
schrodinger.infra.mm.MMIM_ARG_BOOL_ARRAY_END
schrodinger.infra.mm.MMIM_ARG_BOOL_BEGIN
schrodinger.infra.mm.MMIM_ARG_BOOL_END
schrodinger.infra.mm.MMIM_ARG_FLOAT_ARRAY_BEGIN
schrodinger.infra.mm.MMIM_ARG_FLOAT_ARRAY_END
schrodinger.infra.mm.MMIM_ARG_FLOAT_BEGIN
schrodinger.infra.mm.MMIM_ARG_FLOAT_END
schrodinger.infra.mm.MMIM_ARG_INT_ARRAY_BEGIN
schrodinger.infra.mm.MMIM_ARG_INT_ARRAY_END
schrodinger.infra.mm.MMIM_ARG_INT_BEGIN
schrodinger.infra.mm.MMIM_ARG_INT_END
schrodinger.infra.mm.MMIM_ARG_STRING_ARRAY_BEGIN
schrodinger.infra.mm.MMIM_ARG_STRING_ARRAY_END
schrodinger.infra.mm.MMIM_ARG_STRING_BEGIN
schrodinger.infra.mm.MMIM_ARG_STRING_END
schrodinger.infra.mm.MMIM_ARG_TOTAL_COUNT
schrodinger.infra.mm.MMIM_BADVALUE
schrodinger.infra.mm.MMIM_CG_ALLOW_NINVERT
schrodinger.infra.mm.MMIM_CG_ALLOW_RING_FLIP
schrodinger.infra.mm.MMIM_CG_CHDOCK_DRESSEDFILE
schrodinger.infra.mm.MMIM_CG_CHDOCK_FEATFILE
schrodinger.infra.mm.MMIM_CG_CHDOCK_FROMTO
schrodinger.infra.mm.MMIM_CG_CHDOCK_GEOMCULL
schrodinger.infra.mm.MMIM_CG_CHDOCK_INITCULL
schrodinger.infra.mm.MMIM_CG_CHDOCK_RESTRAINFORCE
schrodinger.infra.mm.MMIM_CG_CHDOCK_RESTRAINHALFWIDTH
schrodinger.infra.mm.MMIM_CG_CHDOCK_SCORECULL
schrodinger.infra.mm.MMIM_CG_CONFGEN_AMIDE_MODE
schrodinger.infra.mm.MMIM_CG_COREHOP_TEMPLATE_FILE
schrodinger.infra.mm.MMIM_CG_CORE_DEF_MODE
schrodinger.infra.mm.MMIM_CG_CORE_POSITIONS
schrodinger.infra.mm.MMIM_CG_CORE_POS_MAX_RMSD
schrodinger.infra.mm.MMIM_CG_CORE_RESTRAIN
schrodinger.infra.mm.MMIM_CG_CORE_RESTRAIN_RAD
schrodinger.infra.mm.MMIM_CG_CORE_RESTRAIN_X
schrodinger.infra.mm.MMIM_CG_CORE_RESTRAIN_Y
schrodinger.infra.mm.MMIM_CG_CORE_RESTRAIN_Z
schrodinger.infra.mm.MMIM_CG_ENUM_DOCK_MODE
schrodinger.infra.mm.MMIM_CG_INCLUDE_INPUT_RING
schrodinger.infra.mm.MMIM_CG_LIG_ATOM_MAX
schrodinger.infra.mm.MMIM_CG_LIG_ROTBOND_MAX
schrodinger.infra.mm.MMIM_CG_LIG_VDW_CUTOFF
schrodinger.infra.mm.MMIM_CG_LIG_VDW_SCALE
schrodinger.infra.mm.MMIM_CG_MODE
schrodinger.infra.mm.MMIM_CG_PCALIGN_FEATFILE
schrodinger.infra.mm.MMIM_CG_PCALIGN_MAXALIGN
schrodinger.infra.mm.MMIM_CG_PCALIGN_PCFILE
schrodinger.infra.mm.MMIM_CG_PCDOCK_GEOMCULL
schrodinger.infra.mm.MMIM_CG_PCDOCK_INITCULL
schrodinger.infra.mm.MMIM_CG_PCDOCK_RESTRAINFORCE
schrodinger.infra.mm.MMIM_CG_PCDOCK_RESTRAINHALFWIDTH
schrodinger.infra.mm.MMIM_CG_PCDOCK_RMSEQUIV
schrodinger.infra.mm.MMIM_CG_PCDOCK_SCORECULL
schrodinger.infra.mm.MMIM_CG_PCDOCK_TEMPLATE_CT
schrodinger.infra.mm.MMIM_CG_PCDOCK_TEMPLATE_FMT
schrodinger.infra.mm.MMIM_CG_PCDOCK_TEMPLATE_NUM
schrodinger.infra.mm.MMIM_CG_PCDOCK_TEMPLATE_SIDECHAINS
schrodinger.infra.mm.MMIM_CG_PCDOCK_TEMPLATE_SOURCE
schrodinger.infra.mm.MMIM_CG_PENAL_AMIDE_ROT
schrodinger.infra.mm.MMIM_CG_POSTDOCK_NPOSES
schrodinger.infra.mm.MMIM_CG_POSTDOCK_STRAINCOR
schrodinger.infra.mm.MMIM_CG_READ_ZIP
schrodinger.infra.mm.MMIM_CG_RECEP_GRID_BASE
schrodinger.infra.mm.MMIM_CG_SIDECHAIN_NODE
schrodinger.infra.mm.MMIM_CG_USE_POSTDOCK
schrodinger.infra.mm.MMIM_CHCOMBINED_JOB
schrodinger.infra.mm.MMIM_CHDOCK_JOB
schrodinger.infra.mm.MMIM_COMBIGLIDE_JOB
schrodinger.infra.mm.MMIM_CONS_ATOMPAIRLIST
schrodinger.infra.mm.MMIM_CONS_BUFFERBS
schrodinger.infra.mm.MMIM_CONS_BUFFER_FORCE_CONST
schrodinger.infra.mm.MMIM_CONS_CONSANGLE
schrodinger.infra.mm.MMIM_CONS_CONSBOND
schrodinger.infra.mm.MMIM_CONS_CONSBOND_HMC
schrodinger.infra.mm.MMIM_CONS_CONSSOLVENT
schrodinger.infra.mm.MMIM_CONS_CONSUSER
schrodinger.infra.mm.MMIM_CONS_FROZENBS
schrodinger.infra.mm.MMIM_CONS_PAIRDISTANCES
schrodinger.infra.mm.MMIM_CONS_SHAKETOL
schrodinger.infra.mm.MMIM_CT_HANDLE
schrodinger.infra.mm.MMIM_CURRENT_PROJ
schrodinger.infra.mm.MMIM_CURRENT_PROJ_PATH
schrodinger.infra.mm.MMIM_DIELECTRIC_CONST
schrodinger.infra.mm.MMIM_DOCKING_JOB
schrodinger.infra.mm.MMIM_DOCKING_METHOD
schrodinger.infra.mm.MMIM_DOCK_CONS_PATTERN_HANDLES
schrodinger.infra.mm.MMIM_DYNAMICS_JOB
schrodinger.infra.mm.MMIM_DYNA_EFFECTIVEDENSITY
schrodinger.infra.mm.MMIM_DYNA_ENSEMBLE
schrodinger.infra.mm.MMIM_DYNA_INITTEMPGAUSS
schrodinger.infra.mm.MMIM_DYNA_INITVELO
schrodinger.infra.mm.MMIM_DYNA_ISOTHERCOMP
schrodinger.infra.mm.MMIM_DYNA_NUMBERMDSTEPS
schrodinger.infra.mm.MMIM_DYNA_TARGETPRESS
schrodinger.infra.mm.MMIM_DYNA_TARGETTEMP
schrodinger.infra.mm.MMIM_DYNA_TAUTEMP
schrodinger.infra.mm.MMIM_DYNA_TAUVOL
schrodinger.infra.mm.MMIM_DYNA_TIMESTEP
schrodinger.infra.mm.MMIM_DYNA_VOLUMESCALING
schrodinger.infra.mm.MMIM_ENTRY_TITLE
schrodinger.infra.mm.MMIM_EOF
schrodinger.infra.mm.MMIM_ERR
schrodinger.infra.mm.MMIM_FORCE_FIELD
schrodinger.infra.mm.MMIM_FROM_MAESTRO
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_ACCEP
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_BEGIN
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_DONOR
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_END
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_METAL
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_NOE
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_PHOB
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_POSIT
schrodinger.infra.mm.MMIM_GLIDECONS_TYPE_UNUSED
schrodinger.infra.mm.MMIM_GLIDE_ASL_RES_INTERACTION
schrodinger.infra.mm.MMIM_GLIDE_CALC_INPUT_RMS
schrodinger.infra.mm.MMIM_GLIDE_COMPRESS_POSES
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_AMIDE_MODE
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_AMIDE_TRANSINCL
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_AMIDE_TRANSTOL
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_EXTRA
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_INPUTRING
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_NINVERT
schrodinger.infra.mm.MMIM_GLIDE_CONFGEN_RINGCONF
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_ATOMS
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_FEATINDEX
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_HASINCLUDE
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_HASNFILL
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_INCLUDE
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_NFILL
schrodinger.infra.mm.MMIM_GLIDE_CONSFEAT_PATTERNS
schrodinger.infra.mm.MMIM_GLIDE_CONSGROUP_HANDLES
schrodinger.infra.mm.MMIM_GLIDE_CONSGROUP_NREQUIRED
schrodinger.infra.mm.MMIM_GLIDE_CONS_FEAT_FILENAME
schrodinger.infra.mm.MMIM_GLIDE_CONS_FINALONLY
schrodinger.infra.mm.MMIM_GLIDE_CONS_HANDLES
schrodinger.infra.mm.MMIM_GLIDE_CONS_HAVE_FEAT
schrodinger.infra.mm.MMIM_GLIDE_CONS_USE_METALRAD
schrodinger.infra.mm.MMIM_GLIDE_CONS_USE_SYMATOMS
schrodinger.infra.mm.MMIM_GLIDE_CORE_ATOMS
schrodinger.infra.mm.MMIM_GLIDE_CORE_DEFINITION
schrodinger.infra.mm.MMIM_GLIDE_CORE_FILTER
schrodinger.infra.mm.MMIM_GLIDE_CORE_POS_MAX_RMSD
schrodinger.infra.mm.MMIM_GLIDE_CORE_RESTRAIN
schrodinger.infra.mm.MMIM_GLIDE_CORE_RESTRAIN_V
schrodinger.infra.mm.MMIM_GLIDE_CORE_SMARTS
schrodinger.infra.mm.MMIM_GLIDE_DIELCO
schrodinger.infra.mm.MMIM_GLIDE_DOCK_LIGAND_SOURCE
schrodinger.infra.mm.MMIM_GLIDE_DOINTRA
schrodinger.infra.mm.MMIM_GLIDE_DOINTRA_SCALE
schrodinger.infra.mm.MMIM_GLIDE_ELEMENTS
schrodinger.infra.mm.MMIM_GLIDE_EXPANDED_SAMPLING
schrodinger.infra.mm.MMIM_GLIDE_EXVOL_PENAL_NUM
schrodinger.infra.mm.MMIM_GLIDE_EXVOL_PENAL_STR
schrodinger.infra.mm.MMIM_GLIDE_FIT_LIGAND_DENSITY
schrodinger.infra.mm.MMIM_GLIDE_FLEX_ASL
schrodinger.infra.mm.MMIM_GLIDE_GRIDFILE
schrodinger.infra.mm.MMIM_GLIDE_GRID_USE_DSCCUT
schrodinger.infra.mm.MMIM_GLIDE_GRID_USE_POTCUT
schrodinger.infra.mm.MMIM_GLIDE_GRID_USE_SITECUT
schrodinger.infra.mm.MMIM_GLIDE_GSCORE_VERSION
schrodinger.infra.mm.MMIM_GLIDE_IFD_CROSSCL
schrodinger.infra.mm.MMIM_GLIDE_IFD_DXCUT
schrodinger.infra.mm.MMIM_GLIDE_IFD_HARDDOCK_NAME
schrodinger.infra.mm.MMIM_GLIDE_IFD_HARDDOCK_STAGE
schrodinger.infra.mm.MMIM_GLIDE_IFD_LPCUT
schrodinger.infra.mm.MMIM_GLIDE_IFD_NEWSOFT_NAME
schrodinger.infra.mm.MMIM_GLIDE_IFD_NEWSOFT_STAGE
schrodinger.infra.mm.MMIM_GLIDE_IFD_OLDSOFT_NAME
schrodinger.infra.mm.MMIM_GLIDE_IFD_OLDSOFT_STAGE
schrodinger.infra.mm.MMIM_GLIDE_IFD_RPRE
schrodinger.infra.mm.MMIM_GLIDE_IFD_RSCUT
schrodinger.infra.mm.MMIM_GLIDE_IFD_RWCUT
schrodinger.infra.mm.MMIM_GLIDE_IFD_SCCUT
schrodinger.infra.mm.MMIM_GLIDE_IFD_TR0
schrodinger.infra.mm.MMIM_GLIDE_KEEP_RAWMAE
schrodinger.infra.mm.MMIM_GLIDE_KEEP_SKIPPED
schrodinger.infra.mm.MMIM_GLIDE_LIGAND_FILE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_FFUNC_FILE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_LIPO
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_NSTAGES
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_OFFSET
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_REORG_FIT_NAME
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_REORG_FIT_STAGE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_STAGE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_TESTSET_DOCK_NAME
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_TESTSET_DOCK_STAGE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_WATREF
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_WMAP_FILE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_WMAP_FIT_NAME
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_WMAP_FIT_STAGE
schrodinger.infra.mm.MMIM_GLIDE_NEWXP_ZROFF
schrodinger.infra.mm.MMIM_GLIDE_NOSORT_POSES
schrodinger.infra.mm.MMIM_GLIDE_OUTPUT_DIR
schrodinger.infra.mm.MMIM_GLIDE_PARA_NPROC
schrodinger.infra.mm.MMIM_GLIDE_PARA_SUBJOBS
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_CG
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_CVFACT
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_GSFACT
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_LIGMIN
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_NPOSES
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_PMITMAX
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_SCITMAX
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_STRAINCOR
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_XP_DELE
schrodinger.infra.mm.MMIM_GLIDE_POSTDOCK_ZINT
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_ELEC
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_EMFACTOR
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_EMTHRESH
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_FCTIGHT
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_GSFACTOR
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_GSTHRESH
schrodinger.infra.mm.MMIM_GLIDE_POSTSTRAIN_HWTIGHT
schrodinger.infra.mm.MMIM_GLIDE_PRECISION
schrodinger.infra.mm.MMIM_GLIDE_PREMIN_CG
schrodinger.infra.mm.MMIM_GLIDE_PREMIN_ELEC
schrodinger.infra.mm.MMIM_GLIDE_PREMIN_ITMAX
schrodinger.infra.mm.MMIM_GLIDE_RADIUS_RES_INTERACTION
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_ATOMS
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_MAX
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_NAMES
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_NUM
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_RNOEMAX
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_RNOEMIN
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_RPOS
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_XNOE
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_XPOS
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_YNOE
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_YPOS
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_ZNOE
schrodinger.infra.mm.MMIM_GLIDE_REC_CONS_ZPOS
schrodinger.infra.mm.MMIM_GLIDE_REC_EXVOL_NAMES
schrodinger.infra.mm.MMIM_GLIDE_REC_EXVOL_NUM
schrodinger.infra.mm.MMIM_GLIDE_REC_NOECONS_NUM
schrodinger.infra.mm.MMIM_GLIDE_REC_PHOBCONS_NUM
schrodinger.infra.mm.MMIM_GLIDE_REC_POSITCONS_NUM
schrodinger.infra.mm.MMIM_GLIDE_REC_REXVOL
schrodinger.infra.mm.MMIM_GLIDE_REC_REXVOLIN
schrodinger.infra.mm.MMIM_GLIDE_REC_SCALE_ASL
schrodinger.infra.mm.MMIM_GLIDE_REC_SCALE_CHG
schrodinger.infra.mm.MMIM_GLIDE_REC_SCALE_RAD
schrodinger.infra.mm.MMIM_GLIDE_REC_USE_ASLSCALE
schrodinger.infra.mm.MMIM_GLIDE_REC_USE_MAESCALE
schrodinger.infra.mm.MMIM_GLIDE_REC_XEXVOL
schrodinger.infra.mm.MMIM_GLIDE_REC_YEXVOL
schrodinger.infra.mm.MMIM_GLIDE_REC_ZEXVOL
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_CT
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_ENTRY
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_FILE
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_FMT
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_NUM
schrodinger.infra.mm.MMIM_GLIDE_REF_LIGAND_SOURCE
schrodinger.infra.mm.MMIM_GLIDE_SCORING_EXTRA
schrodinger.infra.mm.MMIM_GLIDE_SCOR_USE_METALRAD
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_BASE_PENALTY
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_HIGH_SIMILARITY
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_JOB
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_LOW_SIMILARITY
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_MODE
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_REJECT
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_SCORE_ACT_FILE
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_SCORE_ACT_FMT
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WEIGHT_SCORES
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_ACT_FILE
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_ACT_FMT
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_FILE
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_INACT_FILE
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_INACT_FMT
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_INACT_NUM
schrodinger.infra.mm.MMIM_GLIDE_SIMIL_WGT_RANDOM
schrodinger.infra.mm.MMIM_GLIDE_SKIP_EPIK_METALONLY
schrodinger.infra.mm.MMIM_GLIDE_TORCONSFILE
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_ALLBONDS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_IATOMS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_JATOMS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_KATOMS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_LATOMS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_PATTERNS
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_PATTERN_INDEX
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_SETVAL
schrodinger.infra.mm.MMIM_GLIDE_TORCONS_VALUES
schrodinger.infra.mm.MMIM_GLIDE_USECONS_FEATINDEX
schrodinger.infra.mm.MMIM_GLIDE_USECONS_GROUPINDEX
schrodinger.infra.mm.MMIM_GLIDE_USECONS_LABELS
schrodinger.infra.mm.MMIM_GLIDE_USE_ALL_EXVOL
schrodinger.infra.mm.MMIM_GLIDE_USE_CONS_FEAT
schrodinger.infra.mm.MMIM_GLIDE_USE_CONS_MAX
schrodinger.infra.mm.MMIM_GLIDE_USE_EPIK_PENAL
schrodinger.infra.mm.MMIM_GLIDE_USE_EXVOL_NAMES
schrodinger.infra.mm.MMIM_GLIDE_USE_EXVOL_NUM
schrodinger.infra.mm.MMIM_GLIDE_USE_FLEXASL
schrodinger.infra.mm.MMIM_GLIDE_USE_FLEXMAE
schrodinger.infra.mm.MMIM_GLIDE_USE_NEWXP
schrodinger.infra.mm.MMIM_GLIDE_USE_POSTDOCK
schrodinger.infra.mm.MMIM_GLIDE_USE_PREMIN
schrodinger.infra.mm.MMIM_GLIDE_USE_REC_CONS
schrodinger.infra.mm.MMIM_GLIDE_USE_REC_EXVOL
schrodinger.infra.mm.MMIM_GLIDE_USE_REF_LIGAND
schrodinger.infra.mm.MMIM_GLIDE_WRITEREPT
schrodinger.infra.mm.MMIM_GLIDE_WRITE_RES_INTERACTION
schrodinger.infra.mm.MMIM_GLIDE_XP_NXCORE
schrodinger.infra.mm.MMIM_GLIDE_XP_WRITE_DESC
schrodinger.infra.mm.MMIM_GLIDE_XP_XPREFCUT
schrodinger.infra.mm.MMIM_GRIDGEN_JOB
schrodinger.infra.mm.MMIM_HMC_JOB
schrodinger.infra.mm.MMIM_HMC_NCYCLES
schrodinger.infra.mm.MMIM_HMC_NMDMC
schrodinger.infra.mm.MMIM_HMC_TIMESTEP
schrodinger.infra.mm.MMIM_JOB_DISPOSITION
schrodinger.infra.mm.MMIM_JOB_DRIVERHOST_ARG
schrodinger.infra.mm.MMIM_JOB_HOST
schrodinger.infra.mm.MMIM_JOB_HOST_ARG
schrodinger.infra.mm.MMIM_JOB_ID
schrodinger.infra.mm.MMIM_JOB_LOGIN
schrodinger.infra.mm.MMIM_JOB_NAME
schrodinger.infra.mm.MMIM_JOB_TMPDIR
schrodinger.infra.mm.MMIM_JOB_TYPE
schrodinger.infra.mm.MMIM_LIA_BINDE_MODEL
schrodinger.infra.mm.MMIM_LIA_FIX_ALPHA
schrodinger.infra.mm.MMIM_LIA_FIX_BETA
schrodinger.infra.mm.MMIM_LIA_FIX_GAMMA
schrodinger.infra.mm.MMIM_LIA_FIX_GS_INTERCEPT
schrodinger.infra.mm.MMIM_LIA_FIX_GS_SLOPE
schrodinger.infra.mm.MMIM_LIA_GSCORE_INTERCEPT
schrodinger.infra.mm.MMIM_LIA_GSCORE_SLOPE
schrodinger.infra.mm.MMIM_LIA_HASLIALIG
schrodinger.infra.mm.MMIM_LIA_JOB
schrodinger.infra.mm.MMIM_LIA_LIAALPHA
schrodinger.infra.mm.MMIM_LIA_LIAANALYSISTYPE
schrodinger.infra.mm.MMIM_LIA_LIABEFILE
schrodinger.infra.mm.MMIM_LIA_LIABETA
schrodinger.infra.mm.MMIM_LIA_LIABOUNDGCUT
schrodinger.infra.mm.MMIM_LIA_LIABOUNDHEAT
schrodinger.infra.mm.MMIM_LIA_LIABOUNDINT
schrodinger.infra.mm.MMIM_LIA_LIABOUNDMINI
schrodinger.infra.mm.MMIM_LIA_LIABOUNDPREMINI
schrodinger.infra.mm.MMIM_LIA_LIABOUNDPROD
schrodinger.infra.mm.MMIM_LIA_LIAFITNAME
schrodinger.infra.mm.MMIM_LIA_LIAFREEINT
schrodinger.infra.mm.MMIM_LIA_LIAGAMMA
schrodinger.infra.mm.MMIM_LIA_LIALIGFMT
schrodinger.infra.mm.MMIM_LIA_LIALIGFNAME
schrodinger.infra.mm.MMIM_LIA_LIALIGGCUT
schrodinger.infra.mm.MMIM_LIA_LIALIGHEAT
schrodinger.infra.mm.MMIM_LIA_LIALIGMINI
schrodinger.infra.mm.MMIM_LIA_LIALIGPREMINI
schrodinger.infra.mm.MMIM_LIA_LIALIGPROD
schrodinger.infra.mm.MMIM_LIA_LIALISTFILE
schrodinger.infra.mm.MMIM_LIA_LIALOWCUT
schrodinger.infra.mm.MMIM_LIA_LIAMETHOD
schrodinger.infra.mm.MMIM_LIA_LIANPROC
schrodinger.infra.mm.MMIM_LIA_LIARELTIME
schrodinger.infra.mm.MMIM_LIA_LIASIMTYPE
schrodinger.infra.mm.MMIM_LIA_LIASNAME
schrodinger.infra.mm.MMIM_LIA_LIASPECLIGS
schrodinger.infra.mm.MMIM_LIA_LIATEMP
schrodinger.infra.mm.MMIM_LIA_LIATYPE
schrodinger.infra.mm.MMIM_LIA_LIAUPCUT
schrodinger.infra.mm.MMIM_LIA_MINIBOUND
schrodinger.infra.mm.MMIM_LIA_MINILIG
schrodinger.infra.mm.MMIM_LIA_MIN_ALGORITHM
schrodinger.infra.mm.MMIM_LIA_TN_BOUND_CUTOFF
schrodinger.infra.mm.MMIM_LIA_TN_BOUND_NFULL
schrodinger.infra.mm.MMIM_LIA_TN_FREE_CUTOFF
schrodinger.infra.mm.MMIM_LIA_TN_FREE_NFULL
schrodinger.infra.mm.MMIM_LIA_USE_MAE_CHARGES
schrodinger.infra.mm.MMIM_LIGAND_NAME
schrodinger.infra.mm.MMIM_LIG_BADDIST
schrodinger.infra.mm.MMIM_LIG_BADDIST2
schrodinger.infra.mm.MMIM_LIG_CCUT
schrodinger.infra.mm.MMIM_LIG_DOCKDISPLAYED
schrodinger.infra.mm.MMIM_LIG_ECONFCUT
schrodinger.infra.mm.MMIM_LIG_ENDLIG
schrodinger.infra.mm.MMIM_LIG_INNERBOX
schrodinger.infra.mm.MMIM_LIG_LIGFMT
schrodinger.infra.mm.MMIM_LIG_LIGLIST
schrodinger.infra.mm.MMIM_LIG_LIGOFFSET
schrodinger.infra.mm.MMIM_LIG_MAXLIGAT
schrodinger.infra.mm.MMIM_LIG_MAXLIGRB
schrodinger.infra.mm.MMIM_LIG_RINGCONFCUT
schrodinger.infra.mm.MMIM_LIG_STARTLIG
schrodinger.infra.mm.MMIM_LIG_USECURLIG
schrodinger.infra.mm.MMIM_LIG_USE_MAE_CHARGES
schrodinger.infra.mm.MMIM_LIG_VSCALE
schrodinger.infra.mm.MMIM_MDPARAMS_EVERY
schrodinger.infra.mm.MMIM_MDPARAMS_FASTFREQ
schrodinger.infra.mm.MMIM_MDPARAMS_INTEGRATOR
schrodinger.infra.mm.MMIM_MDPARAMS_MDSTATISTICS
schrodinger.infra.mm.MMIM_MDPARAMS_MEDIUMFREQ
schrodinger.infra.mm.MMIM_MDPARAMS_NPRNT
schrodinger.infra.mm.MMIM_MDPARAMS_SLOWFREQ
schrodinger.infra.mm.MMIM_MDPARAMS_STOPROT
schrodinger.infra.mm.MMIM_MDPARAMS_TRAJ
schrodinger.infra.mm.MMIM_MDPARAMS_TRAJFILE
schrodinger.infra.mm.MMIM_MDPARAMS_TRAJVELOCITIES
schrodinger.infra.mm.MMIM_MINIMIZATION_JOB
schrodinger.infra.mm.MMIM_MINI_ALGORITHM
schrodinger.infra.mm.MMIM_MINI_CONVERGENCE
schrodinger.infra.mm.MMIM_MINI_DECRITERIA
schrodinger.infra.mm.MMIM_MINI_DX0
schrodinger.infra.mm.MMIM_MINI_DXM
schrodinger.infra.mm.MMIM_MINI_NCYCLES
schrodinger.infra.mm.MMIM_MINI_RMSCRITERIA
schrodinger.infra.mm.MMIM_MINI_TN_CUTOFF
schrodinger.infra.mm.MMIM_MINI_TN_NFULL
schrodinger.infra.mm.MMIM_MOL_BITSETS
schrodinger.infra.mm.MMIM_MOL_IDS
schrodinger.infra.mm.MMIM_MULTI_DOCKING_JOB
schrodinger.infra.mm.MMIM_NEWXP_DELPOSE
schrodinger.infra.mm.MMIM_NEWXP_MAXKEEP
schrodinger.infra.mm.MMIM_NEWXP_MAXPERLIG
schrodinger.infra.mm.MMIM_NEWXP_MAXREF
schrodinger.infra.mm.MMIM_NEWXP_RMSPOSE
schrodinger.infra.mm.MMIM_NOTFOUND
schrodinger.infra.mm.MMIM_NO_TEST_FF
schrodinger.infra.mm.MMIM_OK
schrodinger.infra.mm.MMIM_OLDSOFT_DELPOSE
schrodinger.infra.mm.MMIM_OLDSOFT_RMSPOSE
schrodinger.infra.mm.MMIM_OUTPUT_DELPOSE
schrodinger.infra.mm.MMIM_OUTPUT_MAXPERLIG
schrodinger.infra.mm.MMIM_OUTPUT_NMAXRMSSYM
schrodinger.infra.mm.MMIM_OUTPUT_NREPORT
schrodinger.infra.mm.MMIM_OUTPUT_OUTPUTDISP
schrodinger.infra.mm.MMIM_OUTPUT_PERIODICPV
schrodinger.infra.mm.MMIM_OUTPUT_POSEDIST
schrodinger.infra.mm.MMIM_OUTPUT_PVFREQ
schrodinger.infra.mm.MMIM_PCALIGN_JOB
schrodinger.infra.mm.MMIM_POTE_BOUNDARY
schrodinger.infra.mm.MMIM_POTE_CONTINUUMTYPE
schrodinger.infra.mm.MMIM_POTE_DIELECTRICTYPE
schrodinger.infra.mm.MMIM_POTE_EWALDALPHA
schrodinger.infra.mm.MMIM_POTE_EWALDCORRECTION
schrodinger.infra.mm.MMIM_POTE_EWALDKMAX
schrodinger.infra.mm.MMIM_POTE_FASTLEVEL
schrodinger.infra.mm.MMIM_POTE_FASTMAXMULT
schrodinger.infra.mm.MMIM_POTE_FASTMULTIPOLE
schrodinger.infra.mm.MMIM_POTE_FASTSMOOTH
schrodinger.infra.mm.MMIM_POTE_FORCEPLANAR
schrodinger.infra.mm.MMIM_POTE_LISTUPDATE
schrodinger.infra.mm.MMIM_POTE_PARAMSTD
schrodinger.infra.mm.MMIM_POTE_PBFRESOLUTION
schrodinger.infra.mm.MMIM_POTE_SCALEIMP
schrodinger.infra.mm.MMIM_POTE_SCALEIMPBEND
schrodinger.infra.mm.MMIM_POTE_SCALETOR
schrodinger.infra.mm.MMIM_POTE_SGBCUTOFF
schrodinger.infra.mm.MMIM_POTE_TRUNCATIONUSE
schrodinger.infra.mm.MMIM_POTE_TRUNCDIST
schrodinger.infra.mm.MMIM_POTE_TRUNCLOW
schrodinger.infra.mm.MMIM_POTE_TRUNCSELECT
schrodinger.infra.mm.MMIM_POTE_TRUNCTYPE
schrodinger.infra.mm.MMIM_POTE_TRUNCUPP
schrodinger.infra.mm.MMIM_QMMM_JOB
schrodinger.infra.mm.MMIM_QMSTATE_CHARGE
schrodinger.infra.mm.MMIM_QMSTATE_MULT
schrodinger.infra.mm.MMIM_QMSTATE_NPROC
schrodinger.infra.mm.MMIM_QMSTATE_OPT
schrodinger.infra.mm.MMIM_QMSTATE_OPTIONS
schrodinger.infra.mm.MMIM_QMSTATE_QMMET
schrodinger.infra.mm.MMIM_QMSTATE_SPIN_UNRES
schrodinger.infra.mm.MMIM_QSITE_CONTINUUMTYPE
schrodinger.infra.mm.MMIM_QSITE_DIELECTRICTYPE
schrodinger.infra.mm.MMIM_QSITE_DIELECTRIC_CONST
schrodinger.infra.mm.MMIM_QSITE_FORCEFIELD
schrodinger.infra.mm.MMIM_QSITE_HCAP
schrodinger.infra.mm.MMIM_QSITE_HCAPDIST
schrodinger.infra.mm.MMIM_QSITE_LISTUPDATE
schrodinger.infra.mm.MMIM_QSITE_MINI_ALGORITHM
schrodinger.infra.mm.MMIM_QSITE_MINI_NCYCLES
schrodinger.infra.mm.MMIM_QSITE_MIN_DELTAE
schrodinger.infra.mm.MMIM_QSITE_MIN_RMSCUT
schrodinger.infra.mm.MMIM_QSITE_MMATOM
schrodinger.infra.mm.MMIM_QSITE_OPT_METHOD
schrodinger.infra.mm.MMIM_QSITE_OPT_NCYCLES
schrodinger.infra.mm.MMIM_QSITE_PBFRESOLUTION
schrodinger.infra.mm.MMIM_QSITE_PROD_ENTRY
schrodinger.infra.mm.MMIM_QSITE_QMATNUM
schrodinger.infra.mm.MMIM_QSITE_QMATOM
schrodinger.infra.mm.MMIM_QSITE_QMCHN
schrodinger.infra.mm.MMIM_QSITE_QMINST
schrodinger.infra.mm.MMIM_QSITE_QMMOL
schrodinger.infra.mm.MMIM_QSITE_QMRES
schrodinger.infra.mm.MMIM_QSITE_REACT_ENTRY
schrodinger.infra.mm.MMIM_QSITE_RESTART
schrodinger.infra.mm.MMIM_QSITE_RESTTOR
schrodinger.infra.mm.MMIM_QSITE_RESTTOR_ADJ_VAL
schrodinger.infra.mm.MMIM_QSITE_RESTTOR_FC_ADJUST
schrodinger.infra.mm.MMIM_QSITE_RESTTOR_FORCEC
schrodinger.infra.mm.MMIM_QSITE_RESTTOR_RANGE
schrodinger.infra.mm.MMIM_QSITE_SEATNUM
schrodinger.infra.mm.MMIM_QSITE_SEATOM
schrodinger.infra.mm.MMIM_QSITE_SGBCUTOFF
schrodinger.infra.mm.MMIM_QSITE_THEORY
schrodinger.infra.mm.MMIM_QSITE_TRUNCATIONUSE
schrodinger.infra.mm.MMIM_QSITE_TRUNCDIST
schrodinger.infra.mm.MMIM_QSITE_TRUNCLOW
schrodinger.infra.mm.MMIM_QSITE_TRUNCSELECT
schrodinger.infra.mm.MMIM_QSITE_TRUNCTYPE
schrodinger.infra.mm.MMIM_QSITE_TRUNCUPP
schrodinger.infra.mm.MMIM_QSITE_TSGUESS_ENTRY
schrodinger.infra.mm.MMIM_QSITE_TS_FRACTION
schrodinger.infra.mm.MMIM_QSITE_TS_METHOD
schrodinger.infra.mm.MMIM_RANDOM_SEED
schrodinger.infra.mm.MMIM_RCONF_FILE
schrodinger.infra.mm.MMIM_RECEPTOR_NAME
schrodinger.infra.mm.MMIM_RECEP_ACTXRANGE
schrodinger.infra.mm.MMIM_RECEP_ACTYRANGE
schrodinger.infra.mm.MMIM_RECEP_ACTZRANGE
schrodinger.infra.mm.MMIM_RECEP_BOXSIZE
schrodinger.infra.mm.MMIM_RECEP_CCUT
schrodinger.infra.mm.MMIM_RECEP_FILE
schrodinger.infra.mm.MMIM_RECEP_GRIDCENTER
schrodinger.infra.mm.MMIM_RECEP_GRIDLIG
schrodinger.infra.mm.MMIM_RECEP_GSOURCE
schrodinger.infra.mm.MMIM_RECEP_OUTERBOX
schrodinger.infra.mm.MMIM_RECEP_SIZESPEC
schrodinger.infra.mm.MMIM_RECEP_VSCALE
schrodinger.infra.mm.MMIM_REC_USE_MAE_CHARGES
schrodinger.infra.mm.MMIM_REPEXCH
schrodinger.infra.mm.MMIM_REPEXCH_NSTEPEXCH
schrodinger.infra.mm.MMIM_REPEXCH_REFTEMPID
schrodinger.infra.mm.MMIM_REPEXCH_RESTART
schrodinger.infra.mm.MMIM_REPEXCH_RESTART_FILENAME
schrodinger.infra.mm.MMIM_REPEXCH_TARGETTEMP
schrodinger.infra.mm.MMIM_SCORING_CVCUTOFF
schrodinger.infra.mm.MMIM_SCORING_DIELMOD
schrodinger.infra.mm.MMIM_SCORING_ECUTOFF
schrodinger.infra.mm.MMIM_SCORING_FLEXTORS
schrodinger.infra.mm.MMIM_SCORING_FUNCTION
schrodinger.infra.mm.MMIM_SCORING_HBCUTOFF
schrodinger.infra.mm.MMIM_SCORING_ITMAX
schrodinger.infra.mm.MMIM_SCORING_MAXKEEP
schrodinger.infra.mm.MMIM_SCORING_MAXREF
schrodinger.infra.mm.MMIM_SCORING_MLCUTOFF
schrodinger.infra.mm.MMIM_SCORING_SCORECUT
schrodinger.infra.mm.MMIM_SCORING_VSHORT
schrodinger.infra.mm.MMIM_SMARTS_BUF_SIZ
schrodinger.infra.mm.MMIM_SOAK_DENS
schrodinger.infra.mm.MMIM_SOAK_JOB
schrodinger.infra.mm.MMIM_SOAK_LFROM
schrodinger.infra.mm.MMIM_SOAK_LX
schrodinger.infra.mm.MMIM_SOAK_LY
schrodinger.infra.mm.MMIM_SOAK_LZ
schrodinger.infra.mm.MMIM_SOAK_MOLEC
schrodinger.infra.mm.MMIM_SOAK_NMAX
schrodinger.infra.mm.MMIM_SOAK_TYPE
schrodinger.infra.mm.MMIM_SOLVENT_NAME
schrodinger.infra.mm.MMIM_USE_ENTRIES
schrodinger.infra.mm.MMIM_USE_M2IO_GZIP
schrodinger.infra.mm.MMIM_USE_MAE_CHARGES
schrodinger.infra.mm.MMIM_WRITE_KEYWORDS
schrodinger.infra.mm.MMIM_WRONG_FMT
schrodinger.infra.mm.MMJAG_ANGSTROM_DEGREE
schrodinger.infra.mm.MMJAG_ANGSTROM_RADIAN
schrodinger.infra.mm.MMJAG_ATOMIC_2SPIN
schrodinger.infra.mm.MMJAG_ATOMIC_ATOM
schrodinger.infra.mm.MMJAG_ATOMIC_BASIS
schrodinger.infra.mm.MMJAG_ATOMIC_CHARGE
schrodinger.infra.mm.MMJAG_ATOMIC_COV
schrodinger.infra.mm.MMJAG_ATOMIC_DAF
schrodinger.infra.mm.MMJAG_ATOMIC_ESP
schrodinger.infra.mm.MMJAG_ATOMIC_FORMAL
schrodinger.infra.mm.MMJAG_ATOMIC_FRAG
schrodinger.infra.mm.MMJAG_ATOMIC_GRID
schrodinger.infra.mm.MMJAG_ATOMIC_ISOTOPE
schrodinger.infra.mm.MMJAG_ATOMIC_MASS
schrodinger.infra.mm.MMJAG_ATOMIC_MULK
schrodinger.infra.mm.MMJAG_ATOMIC_MULTIP
schrodinger.infra.mm.MMJAG_ATOMIC_VDW
schrodinger.infra.mm.MMJAG_ATOMIC_VDW2
schrodinger.infra.mm.MMJAG_ATOM_BEND2
schrodinger.infra.mm.MMJAG_ATOM_CART
schrodinger.infra.mm.MMJAG_ATOM_ZMAT
schrodinger.infra.mm.MMJAG_BASIS_CARTESIAN
schrodinger.infra.mm.MMJAG_BASIS_DEFAULT
schrodinger.infra.mm.MMJAG_BASIS_NONCARTESIAN
schrodinger.infra.mm.MMJAG_BOHR_DEGREE
schrodinger.infra.mm.MMJAG_BOHR_RADIAN
schrodinger.infra.mm.MMJAG_CHAR
schrodinger.infra.mm.MMJAG_COORD_ANGLE
schrodinger.infra.mm.MMJAG_COORD_CART_X
schrodinger.infra.mm.MMJAG_COORD_CART_XYZ
schrodinger.infra.mm.MMJAG_COORD_CART_Y
schrodinger.infra.mm.MMJAG_COORD_CART_Z
schrodinger.infra.mm.MMJAG_COORD_DISTANCE
schrodinger.infra.mm.MMJAG_COORD_NATURAL_TORSION
schrodinger.infra.mm.MMJAG_COORD_TORSION
schrodinger.infra.mm.MMJAG_CORR_NONE
schrodinger.infra.mm.MMJAG_CORR_PW91
schrodinger.infra.mm.MMJAG_CORR_PZ
schrodinger.infra.mm.MMJAG_CORR_VWN
schrodinger.infra.mm.MMJAG_CORR_VWN5
schrodinger.infra.mm.MMJAG_DIFF_GEOMETRY
schrodinger.infra.mm.MMJAG_DIFF_MOLECULE
schrodinger.infra.mm.MMJAG_DIRECTIVE_MAEFILE
schrodinger.infra.mm.MMJAG_ERR
schrodinger.infra.mm.MMJAG_EXCH_EXACT
schrodinger.infra.mm.MMJAG_EXCH_SLATER
schrodinger.infra.mm.MMJAG_EXCH_XA
schrodinger.infra.mm.MMJAG_FALSE
schrodinger.infra.mm.MMJAG_FIXED_CONSTRAINT
schrodinger.infra.mm.MMJAG_HARMONIC_CONSTRAINT
schrodinger.infra.mm.MMJAG_HYBRID_B3
schrodinger.infra.mm.MMJAG_HYBRID_B971
schrodinger.infra.mm.MMJAG_HYBRID_B98
schrodinger.infra.mm.MMJAG_HYBRID_HALF
schrodinger.infra.mm.MMJAG_HYBRID_NONE
schrodinger.infra.mm.MMJAG_HYBRID_SB98
schrodinger.infra.mm.MMJAG_INT
schrodinger.infra.mm.MMJAG_INVALID_JAG_HANDLE
schrodinger.infra.mm.MMJAG_JAGUAR_JOB
schrodinger.infra.mm.MMJAG_NATURAL_TORSION_CONSTRAINT
schrodinger.infra.mm.MMJAG_NLCORR_B971
schrodinger.infra.mm.MMJAG_NLCORR_B98
schrodinger.infra.mm.MMJAG_NLCORR_HCTH407
schrodinger.infra.mm.MMJAG_NLCORR_LYP
schrodinger.infra.mm.MMJAG_NLCORR_NONE
schrodinger.infra.mm.MMJAG_NLCORR_P86
schrodinger.infra.mm.MMJAG_NLCORR_PBE
schrodinger.infra.mm.MMJAG_NLCORR_PW91
schrodinger.infra.mm.MMJAG_NLCORR_SB98
schrodinger.infra.mm.MMJAG_NLEXCH_B88
schrodinger.infra.mm.MMJAG_NLEXCH_B971
schrodinger.infra.mm.MMJAG_NLEXCH_B98
schrodinger.infra.mm.MMJAG_NLEXCH_HCTH407
schrodinger.infra.mm.MMJAG_NLEXCH_NONE
schrodinger.infra.mm.MMJAG_NLEXCH_PBE
schrodinger.infra.mm.MMJAG_NLEXCH_PW91
schrodinger.infra.mm.MMJAG_NLEXCH_SB98
schrodinger.infra.mm.MMJAG_NO_CONSTRAINT
schrodinger.infra.mm.MMJAG_OK
schrodinger.infra.mm.MMJAG_QSITE_JOB
schrodinger.infra.mm.MMJAG_REAL
schrodinger.infra.mm.MMJAG_SCAN_CONSTRAINT
schrodinger.infra.mm.MMJAG_SECT_ATOMIC
schrodinger.infra.mm.MMJAG_SECT_CONNECT
schrodinger.infra.mm.MMJAG_SECT_COORD
schrodinger.infra.mm.MMJAG_SECT_ECHO
schrodinger.infra.mm.MMJAG_SECT_EFIELDS
schrodinger.infra.mm.MMJAG_SECT_GVB
schrodinger.infra.mm.MMJAG_SECT_HAM
schrodinger.infra.mm.MMJAG_SECT_HESS
schrodinger.infra.mm.MMJAG_SECT_LMP2
schrodinger.infra.mm.MMJAG_SECT_NBO
schrodinger.infra.mm.MMJAG_SECT_ORBMAN
schrodinger.infra.mm.MMJAG_SECT_PATH
schrodinger.infra.mm.MMJAG_SECT_POINTCH
schrodinger.infra.mm.MMJAG_SECT_WAVEFUNCTION
schrodinger.infra.mm.MMJAG_TARGET_CONSTRAINT
schrodinger.infra.mm.MMJAG_TRUE
schrodinger.infra.mm.MMJAG_UNDEF
schrodinger.infra.mm.MMJAG_ZMAT1
schrodinger.infra.mm.MMJAG_ZMAT2
schrodinger.infra.mm.MMJAG_ZMAT3
schrodinger.infra.mm.MMJOBBE_BAD_FIFO
schrodinger.infra.mm.MMJOBBE_BAD_FIFO_DIR
schrodinger.infra.mm.MMJOBBE_BAD_FILENAME
schrodinger.infra.mm.MMJOBBE_BAD_LISTNAME
schrodinger.infra.mm.MMJOBBE_BAD_MESSAGE
schrodinger.infra.mm.MMJOBBE_BAD_MKFIFO
schrodinger.infra.mm.MMJOBBE_BAD_MSGNAME
schrodinger.infra.mm.MMJOBBE_BAD_READ
schrodinger.infra.mm.MMJOBBE_BAD_READ_OPEN
schrodinger.infra.mm.MMJOBBE_BAD_RMFIFO
schrodinger.infra.mm.MMJOBBE_BAD_WRITE
schrodinger.infra.mm.MMJOBBE_BAD_WRITE_OPEN
schrodinger.infra.mm.MMJOBBE_CANT_LOCK
schrodinger.infra.mm.MMJOBBE_CANT_UNLOCK
schrodinger.infra.mm.MMJOBBE_EMPTY_FIFO
schrodinger.infra.mm.MMJOBBE_EMPTY_LIST
schrodinger.infra.mm.MMJOBBE_EMPTY_MESSAGE
schrodinger.infra.mm.MMJOBBE_ERROR
schrodinger.infra.mm.MMJOBBE_MALLOC
schrodinger.infra.mm.MMJOBBE_NO_JMONITOR
schrodinger.infra.mm.MMJOBBE_NO_JOBID
schrodinger.infra.mm.MMJOBBE_OK
schrodinger.infra.mm.MMJOBBE_STATUS_ACTIVE
schrodinger.infra.mm.MMJOBBE_STATUS_NO_FIFO
schrodinger.infra.mm.MMJOBBE_STATUS_NO_JMONITOR
schrodinger.infra.mm.MMJOBBE_UNINITIALIZED
schrodinger.infra.mm.MMJOBFE_BAD_ARGUMENT
schrodinger.infra.mm.MMJOBFE_BAD_FILENAME
schrodinger.infra.mm.MMJOBFE_BAD_HANDLE
schrodinger.infra.mm.MMJOBFE_BAD_LISTNAME
schrodinger.infra.mm.MMJOBFE_BAD_MESSAGE
schrodinger.infra.mm.MMJOBFE_DEAF_BACKEND
schrodinger.infra.mm.MMJOBFE_EMPTY_MESSAGE
schrodinger.infra.mm.MMJOBFE_ERROR
schrodinger.infra.mm.MMJOBFE_FILE_LOCKED
schrodinger.infra.mm.MMJOBFE_FILE_NOT_FOUND
schrodinger.infra.mm.MMJOBFE_FILE_OPEN_ERROR
schrodinger.infra.mm.MMJOBFE_FILE_READ_ERROR
schrodinger.infra.mm.MMJOBFE_ILLEGAL_VALUE
schrodinger.infra.mm.MMJOBFE_JOBDB_MISSING
schrodinger.infra.mm.MMJOBFE_JOBID_MISSING
schrodinger.infra.mm.MMJOBFE_MMJOB_ERROR
schrodinger.infra.mm.MMJOBFE_NOT_INTEGER
schrodinger.infra.mm.MMJOBFE_NOT_LIST
schrodinger.infra.mm.MMJOBFE_NOT_STRING
schrodinger.infra.mm.MMJOBFE_NO_CONNECTION
schrodinger.infra.mm.MMJOBFE_NO_LAUNCH
schrodinger.infra.mm.MMJOBFE_NO_SUCH_KEY
schrodinger.infra.mm.MMJOBFE_OK
schrodinger.infra.mm.MMJOBFE_OUT_OF_MEMORY
schrodinger.infra.mm.MMJOBFE_READ_FAILURE
schrodinger.infra.mm.MMJOBFE_SEND_FAILURE
schrodinger.infra.mm.MMJOBFE_SOCKET_CLOSED
schrodinger.infra.mm.MMJOBFE_SYS_CONNECT
schrodinger.infra.mm.MMJOBFE_SYS_IPADDR
schrodinger.infra.mm.MMJOBFE_SYS_SIGNAL
schrodinger.infra.mm.MMJOBFE_SYS_SOCKET
schrodinger.infra.mm.MMJOBFE_TRUNCATION
schrodinger.infra.mm.MMJOBFE_UNINITIALIZED
schrodinger.infra.mm.MMJOB_BAD_ARGUMENT
schrodinger.infra.mm.MMJOB_BAD_HANDLE
schrodinger.infra.mm.MMJOB_ERROR
schrodinger.infra.mm.MMJOB_FILE_LOCKED
schrodinger.infra.mm.MMJOB_FILE_NOT_FOUND
schrodinger.infra.mm.MMJOB_FILE_OPEN_ERROR
schrodinger.infra.mm.MMJOB_FILE_READ_ERROR
schrodinger.infra.mm.MMJOB_FILE_WRITE_ERROR
schrodinger.infra.mm.MMJOB_HOSTS_MISSING
schrodinger.infra.mm.MMJOB_ILLEGAL_QUERY
schrodinger.infra.mm.MMJOB_ILLEGAL_VALUE
schrodinger.infra.mm.MMJOB_JOBDB_MISSING
schrodinger.infra.mm.MMJOB_NOT_INTEGER
schrodinger.infra.mm.MMJOB_NOT_LIST
schrodinger.infra.mm.MMJOB_NOT_STRING
schrodinger.infra.mm.MMJOB_NO_SUCH_HOST
schrodinger.infra.mm.MMJOB_NO_SUCH_KEY
schrodinger.infra.mm.MMJOB_OK
schrodinger.infra.mm.MMJOB_OP_BEFORE
schrodinger.infra.mm.MMJOB_OP_CONTAINS
schrodinger.infra.mm.MMJOB_OP_EQUAL
schrodinger.infra.mm.MMJOB_OP_NOT_CONTAINS
schrodinger.infra.mm.MMJOB_OP_NOT_EQUAL
schrodinger.infra.mm.MMJOB_OP_SINCE
schrodinger.infra.mm.MMJOB_OUT_OF_MEMORY
schrodinger.infra.mm.MMJOB_QUERY_BROADEN
schrodinger.infra.mm.MMJOB_QUERY_NARROW
schrodinger.infra.mm.MMJOB_QUERY_NEW
schrodinger.infra.mm.MMJOB_STATUS_COMPLETED
schrodinger.infra.mm.MMJOB_STATUS_EXITED
schrodinger.infra.mm.MMJOB_STATUS_INCORPORATED
schrodinger.infra.mm.MMJOB_STATUS_LAUNCHED
schrodinger.infra.mm.MMJOB_STATUS_PAUSED
schrodinger.infra.mm.MMJOB_STATUS_RUNNING
schrodinger.infra.mm.MMJOB_STATUS_STARTED
schrodinger.infra.mm.MMJOB_STATUS_SUBMITTED
schrodinger.infra.mm.MMJOB_TRUNCATION
schrodinger.infra.mm.MMJOB_UNINITIALIZED
schrodinger.infra.mm.MMKV_ADD_METAL_BINDING_STATES
schrodinger.infra.mm.MMKV_ALL_JOB
schrodinger.infra.mm.MMKV_ANALYSIS_MODE
schrodinger.infra.mm.MMKV_ARG_BOOL_ARRAY_BEGIN
schrodinger.infra.mm.MMKV_ARG_BOOL_ARRAY_END
schrodinger.infra.mm.MMKV_ARG_BOOL_BEGIN
schrodinger.infra.mm.MMKV_ARG_BOOL_END
schrodinger.infra.mm.MMKV_ARG_FLOAT_ARRAY_BEGIN
schrodinger.infra.mm.MMKV_ARG_FLOAT_ARRAY_END
schrodinger.infra.mm.MMKV_ARG_FLOAT_BEGIN
schrodinger.infra.mm.MMKV_ARG_FLOAT_END
schrodinger.infra.mm.MMKV_ARG_INT_ARRAY_BEGIN
schrodinger.infra.mm.MMKV_ARG_INT_ARRAY_END
schrodinger.infra.mm.MMKV_ARG_INT_BEGIN
schrodinger.infra.mm.MMKV_ARG_INT_END
schrodinger.infra.mm.MMKV_ARG_STRING_ARRAY_BEGIN
schrodinger.infra.mm.MMKV_ARG_STRING_ARRAY_END
schrodinger.infra.mm.MMKV_ARG_STRING_BEGIN
schrodinger.infra.mm.MMKV_ARG_STRING_END
schrodinger.infra.mm.MMKV_ARG_TOTAL_COUNT
schrodinger.infra.mm.MMKV_BADVALUE
schrodinger.infra.mm.MMKV_CURRENT_PROJ
schrodinger.infra.mm.MMKV_CURRENT_PROJ_PATH
schrodinger.infra.mm.MMKV_CYP
schrodinger.infra.mm.MMKV_DESALT
schrodinger.infra.mm.MMKV_DETERMINE_CHIRALITIES
schrodinger.infra.mm.MMKV_EOF
schrodinger.infra.mm.MMKV_EPIK
schrodinger.infra.mm.MMKV_EPIK_ADD_METAL_BINDING_STATES
schrodinger.infra.mm.MMKV_EPIK_JOB
schrodinger.infra.mm.MMKV_EPIK_METAL_BINDING_FILE
schrodinger.infra.mm.MMKV_ERR
schrodinger.infra.mm.MMKV_ESTIMATE_ACIDS
schrodinger.infra.mm.MMKV_ESTIMATE_BASES
schrodinger.infra.mm.MMKV_FILTER_FILE
schrodinger.infra.mm.MMKV_FORCE_FIELD
schrodinger.infra.mm.MMKV_FROM_MAESTRO
schrodinger.infra.mm.MMKV_GENERATE_STEREOISOMERS
schrodinger.infra.mm.MMKV_GENERATE_TAUTOMERS
schrodinger.infra.mm.MMKV_HIGHEST_PKA
schrodinger.infra.mm.MMKV_INCLUDE_ORIGINAL_STATE
schrodinger.infra.mm.MMKV_INCLUDE_ORIG_IONIZATION_STATE
schrodinger.infra.mm.MMKV_INCLUDE_ORIG_LABELED_IONIZATION_STATE
schrodinger.infra.mm.MMKV_INCLUDE_ORIG_LABELED_TAUTOMERIZATION_STATE
schrodinger.infra.mm.MMKV_INCLUDE_ORIG_TAUTOMERIZATION_STATE
schrodinger.infra.mm.MMKV_INPUT_CSV_FILE_NAME
schrodinger.infra.mm.MMKV_INPUT_FILE_NAME
schrodinger.infra.mm.MMKV_INPUT_SD_FILE_NAME
schrodinger.infra.mm.MMKV_INPUT_SMI_FILE_NAME
schrodinger.infra.mm.MMKV_IONIZATION
schrodinger.infra.mm.MMKV_JOB_DISPOSITION
schrodinger.infra.mm.MMKV_JOB_HOST
schrodinger.infra.mm.MMKV_JOB_HOST_ARG
schrodinger.infra.mm.MMKV_JOB_ID
schrodinger.infra.mm.MMKV_JOB_LOGIN
schrodinger.infra.mm.MMKV_JOB_NAME
schrodinger.infra.mm.MMKV_JOB_TMPDIR
schrodinger.infra.mm.MMKV_JOB_TYPE
schrodinger.infra.mm.MMKV_LIGPREP_JOB
schrodinger.infra.mm.MMKV_LOWEST_PKA
schrodinger.infra.mm.MMKV_MAX_ATOM
schrodinger.infra.mm.MMKV_MAX_ATOM_PKA
schrodinger.infra.mm.MMKV_MAX_NUM_TAUTOMERS
schrodinger.infra.mm.MMKV_MAX_OUTPUT_STR
schrodinger.infra.mm.MMKV_METAL_BINDING_PARAM_FILE
schrodinger.infra.mm.MMKV_MIN_PROBABILITY
schrodinger.infra.mm.MMKV_MIN_PROBABILITY_TAUTOMERS
schrodinger.infra.mm.MMKV_NJOBS
schrodinger.infra.mm.MMKV_NOTFOUND
schrodinger.infra.mm.MMKV_NUMBER_STEREOISOMERS
schrodinger.infra.mm.MMKV_OK
schrodinger.infra.mm.MMKV_OUTPUT_FILE_NAME
schrodinger.infra.mm.MMKV_OUTPUT_MAESTRO
schrodinger.infra.mm.MMKV_OUTPUT_SDF
schrodinger.infra.mm.MMKV_PH
schrodinger.infra.mm.MMKV_PH_TOLERANCE
schrodinger.infra.mm.MMKV_PKA_ATOM
schrodinger.infra.mm.MMKV_PKA_PARAM_FILE
schrodinger.infra.mm.MMKV_RETAIN_CHIRALITIES
schrodinger.infra.mm.MMKV_RING_CONFORMATIONS
schrodinger.infra.mm.MMKV_SCAN
schrodinger.infra.mm.MMKV_SKIP_PROBLEM_FRAGMENT
schrodinger.infra.mm.MMKV_SMARTS_BUF_SIZ
schrodinger.infra.mm.MMKV_SOLVENT
schrodinger.infra.mm.MMKV_TAUTOMERIZATION
schrodinger.infra.mm.MMKV_TAUTOMER_PARAM_FILE
schrodinger.infra.mm.MMKV_UNIQUE_STRUCTURE
schrodinger.infra.mm.MMKV_USE_ENTRIES
schrodinger.infra.mm.MMKV_USE_M2IO_GZIP
schrodinger.infra.mm.MMKV_VERBOSE
schrodinger.infra.mm.MMKV_WRITE_KEYWORDS
schrodinger.infra.mm.MMKV_WRONG_FMT
schrodinger.infra.mm.MMLEWIS_ERR
schrodinger.infra.mm.MMLEWIS_OK
schrodinger.infra.mm.MMLEWIS_OPTION_DELETE_DUMMY
schrodinger.infra.mm.MMLEWIS_OPTION_IFO
schrodinger.infra.mm.MMLEWIS_OPTION_MMLEWIS_APPLY_DELETE_DUMMIES
schrodinger.infra.mm.MMLEWIS_OPTION_VERBOSE
schrodinger.infra.mm.MMLIST_ERR
schrodinger.infra.mm.MMLIST_OK
schrodinger.infra.mm.MMMDL_APPEND
schrodinger.infra.mm.MMMDL_CGCH_RGROUPS
schrodinger.infra.mm.MMMDL_CONV_AROMATIC
schrodinger.infra.mm.MMMDL_CONV_PKA
schrodinger.infra.mm.MMMDL_DUMP_BAD_CT
schrodinger.infra.mm.MMMDL_EOF
schrodinger.infra.mm.MMMDL_ERR
schrodinger.infra.mm.MMMDL_FIX_LEWIS
schrodinger.infra.mm.MMMDL_GZIP
schrodinger.infra.mm.MMMDL_IMPORT_SDPROP_AS_STRING
schrodinger.infra.mm.MMMDL_IMPORT_SDPROP_PER_FILE
schrodinger.infra.mm.MMMDL_INVERT_X_AXIS
schrodinger.infra.mm.MMMDL_INVERT_Y_AXIS
schrodinger.infra.mm.MMMDL_INVERT_Z_AXIS
schrodinger.infra.mm.MMMDL_NO_CGCH_RGROUPS
schrodinger.infra.mm.MMMDL_NO_CONV_AROMATIC
schrodinger.infra.mm.MMMDL_NO_FIX_LEWIS
schrodinger.infra.mm.MMMDL_NO_IMPORT_SDPROP_AS_STRING
schrodinger.infra.mm.MMMDL_NO_IMPORT_SDPROP_PER_FILE
schrodinger.infra.mm.MMMDL_NO_STEREO
schrodinger.infra.mm.MMMDL_NO_STEREO_BY_ANNOTATION
schrodinger.infra.mm.MMMDL_OK
schrodinger.infra.mm.MMMDL_READ
schrodinger.infra.mm.MMMDL_REL_STEREO
schrodinger.infra.mm.MMMDL_SD_V2000
schrodinger.infra.mm.MMMDL_SD_V3000
schrodinger.infra.mm.MMMDL_SKIP_AMBIGUOUS_BONDS
schrodinger.infra.mm.MMMDL_STEREO
schrodinger.infra.mm.MMMDL_STEREO_BY_ANNOTATION
schrodinger.infra.mm.MMMDL_WRITE
schrodinger.infra.mm.MMMDL_WRITE_V3000
schrodinger.infra.mm.MMMOL2_APPEND
schrodinger.infra.mm.MMMOL2_CONV_AROMATIC
schrodinger.infra.mm.MMMOL2_DUMP_BAD_CT
schrodinger.infra.mm.MMMOL2_EOF
schrodinger.infra.mm.MMMOL2_ERR
schrodinger.infra.mm.MMMOL2_FIX_LEWIS
schrodinger.infra.mm.MMMOL2_NO_AROMATIC
schrodinger.infra.mm.MMMOL2_NO_CONV_AROMATIC
schrodinger.infra.mm.MMMOL2_NO_FIX_LEWIS
schrodinger.infra.mm.MMMOL2_OK
schrodinger.infra.mm.MMMOL2_READ
schrodinger.infra.mm.MMMOL2_SKIP
schrodinger.infra.mm.MMMOL2_TOOBIG
schrodinger.infra.mm.MMMOL2_WRITE
schrodinger.infra.mm.MMNEUT_ERR
schrodinger.infra.mm.MMNEUT_FATAL
schrodinger.infra.mm.MMNEUT_OK
schrodinger.infra.mm.MMNEUT_UNDEF
schrodinger.infra.mm.MMNEUT_WARNING
schrodinger.infra.mm.MMPATTY_AROMATICITY
schrodinger.infra.mm.MMPATTY_AROMATICITY_HALGREN
schrodinger.infra.mm.MMPATTY_CHAR
schrodinger.infra.mm.MMPATTY_CT_STARTED
schrodinger.infra.mm.MMPATTY_DOUBLE
schrodinger.infra.mm.MMPATTY_ERR
schrodinger.infra.mm.MMPATTY_INT
schrodinger.infra.mm.MMPATTY_INVALID_PATTERN
schrodinger.infra.mm.MMPATTY_OK
schrodinger.infra.mm.MMPATTY_SKIP_STEREO
schrodinger.infra.mm.MMPATTY_STEREO
schrodinger.infra.mm.MMPATTY_USE_STEREO
schrodinger.infra.mm.MMPDB_ALL_OCC
schrodinger.infra.mm.MMPDB_CHARGE_FIELD
schrodinger.infra.mm.MMPDB_CHARGE_FULL
schrodinger.infra.mm.MMPDB_CHARGE_NEUTRAL
schrodinger.infra.mm.MMPDB_CHARGE_PH7_PROTONATE_CAPS
schrodinger.infra.mm.MMPDB_CONECT
schrodinger.infra.mm.MMPDB_DUP_CONECT
schrodinger.infra.mm.MMPDB_ELEMENT_FIELD
schrodinger.infra.mm.MMPDB_EOF
schrodinger.infra.mm.MMPDB_ERR
schrodinger.infra.mm.MMPDB_FIRST_OCC
schrodinger.infra.mm.MMPDB_FIXELEM
schrodinger.infra.mm.MMPDB_GEOMETRY
schrodinger.infra.mm.MMPDB_HIGHEST_OCC
schrodinger.infra.mm.MMPDB_IGNORE_OBSLTE
schrodinger.infra.mm.MMPDB_KEEP
schrodinger.infra.mm.MMPDB_NO_CHARGE_FIELD
schrodinger.infra.mm.MMPDB_NO_COMPONENT_DICT
schrodinger.infra.mm.MMPDB_NO_CONECT
schrodinger.infra.mm.MMPDB_NO_DUP_CONECT
schrodinger.infra.mm.MMPDB_NO_ELEMENT_FIELD
schrodinger.infra.mm.MMPDB_NO_FIXELEM
schrodinger.infra.mm.MMPDB_NO_GEOMETRY
schrodinger.infra.mm.MMPDB_NO_PREDICT_MULT_BONDS
schrodinger.infra.mm.MMPDB_NO_REORDER_ATOMS
schrodinger.infra.mm.MMPDB_NO_STD_RES
schrodinger.infra.mm.MMPDB_NO_USE_COLOR
schrodinger.infra.mm.MMPDB_NO_WARN_H
schrodinger.infra.mm.MMPDB_OBSLTE
schrodinger.infra.mm.MMPDB_OK
schrodinger.infra.mm.MMPDB_OVERWRITE
schrodinger.infra.mm.MMPDB_PREDICT_MULT_BONDS
schrodinger.infra.mm.MMPDB_PSP_MODE
schrodinger.infra.mm.MMPDB_REMEDIATED
schrodinger.infra.mm.MMPDB_RENUMBER_INDEX
schrodinger.infra.mm.MMPDB_REORDER_ATOMS
schrodinger.infra.mm.MMPDB_REORDER_BY_RESNUM
schrodinger.infra.mm.MMPDB_REORDER_BY_SEQUENCE
schrodinger.infra.mm.MMPDB_RETAIN_MM_INDEX
schrodinger.infra.mm.MMPDB_SERIAL_HEXADECIMAL
schrodinger.infra.mm.MMPDB_SERIAL_HYBRID36
schrodinger.infra.mm.MMPDB_STD_RES
schrodinger.infra.mm.MMPDB_USE_COLOR
schrodinger.infra.mm.MMPDB_USE_COMPONENT_DICT
schrodinger.infra.mm.MMPDB_WARN_H
schrodinger.infra.mm.MMPDB_WARN_OBSLTE
schrodinger.infra.mm.MMPDB_WRITE_SEQUENCE_HEADERS
schrodinger.infra.mm.MMPKA_ACID
schrodinger.infra.mm.MMPKA_ADJUST_MESO
schrodinger.infra.mm.MMPKA_BASE
schrodinger.infra.mm.MMPKA_CALC_ACIDS_O