Module config

Classes

DEFAULT_SETTING

_create_when_needed

Functions

__calc_bonded_lambda

__calc_charge_lambda

__calc_vdw_lambda

__canonicalize_coulomb_method

__canonicalize_ensemble

__canonicalize_fep

__canonicalize_pressure

__canonicalize_temperature

__get_fep_schedule

__msj2cfg_helper

__set_annealing

__set_convergence

__set_coulomb_method

__set_cutoff_radius

__set_elapsed_time

__set_energy_group

__set_maeff_output

__set_max_steps

__set_model_file

__set_num_vector

__set_randomize_velocity

__set_steepest_descent_steps

__set_surface_tension

__set_temperature

__set_trajectory

__set_vrun_frameset

_xchk_check_annealing

_xchk_check_iwindow

_xchk_check_lambda

_xchk_check_remd_temp_generator

_xchk_check_remd_temp_generator2

add_plugin
canonicalize
extract_cfg
gen_replica
gen_temperature_for_solute_tempering
get_default_setting
get_energy_group_output_filename
get_ensemble_class_method
get_exec
get_exec_name
get_fep_lambda_schedule
get_fep_output_filename
get_homebox
get_replica_setting
get_simbox_output_filename
has_plugin
is_meta
is_minimize
is_remd
is_triclinic_box
is_vrun
lambda_type
msj2cfg
num_cpu
num_lambda_window
num_replica
optimize_key
parse_lambda
remove_plugin
tag_md
tag_meta
tag_minimize
tag_remd
tag_vrun

Variables

DEFAULT_CONFIG
MD
META
MINIMIZE
REMD
VRUN
__package__
cfg
model
msj