Deprecation List

Deprecations in schrodinger.pipeline.pipeio.Grid.addData Set all ligand files in input or via setData.

Deprecations in schrodinger.pipeline.pipeio.Grid.getData Use getFiles instead.

Deprecations in schrodinger.pipeline.pipeio.PhaseDB.getData Use getFiles instead.

Deprecations in schrodinger.pipeline.pipeio.Structures.addData Set all ligand files in input or via setData.

Deprecations in schrodinger.pipeline.pipeio.Structures.getData Use getFiles instead.

Deprecations in schrodinger.pipeline.pipeio.Text.getData Use getFiles instead.

Deprecations in schrodinger.structure.read_ct Use the static Structure.read method instead, as it handles multiple formats and avoids the deprecated 'ct' name.

Deprecations in schrodinger.structutils.analyze.get_approximate_atomic_sasa Deprecated in favor of calculate_sasa, which is more accurate.

Deprecations in schrodinger.structutils.analyze.get_approximate_sasa This function only returns a rough approximation to the solvent accessible surface area. Please use the calculate_sasa function instead.