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Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

I

i (in schrodinger.application.desmond.predict_remd_temp)	index() (in MultiListbox)	INVALID_TABLE_HANDLE (in schrodinger.infra.table)
i (in schrodinger.application.macromodel.input)	index_exp (in schrodinger.protein.assignment)	INVALID_TOKEN (in schrodinger.application.desmond.antlr3.tokens)
i (in schrodinger.job.timestamp)	INDEX_PATTERN (in Key)	INVALID_TOKEN_TYPE (in schrodinger.application.desmond.antlr3.constants)
i1 (in _FFIODihedral)	INDEX_PATTERN (in Map)	INVERT (in schrodinger.project)
i1 (in _FFDihedral)	INDEX_PATTERN2 (in Map)	invert (in schrodinger.protein.assignment)
I_C_ATTACH (in schrodinger.application.desmond.fep_gui)	indexChanged() (in AntibodyNumberingToolBar)	InvertCompleteSelection (in schrodinger.application.bioluminate.pml_menus)
I_LIGAND (in schrodinger.application.desmond.fep_gui)	indir (in schrodinger.application.lid.ligand_interaction_diagram_test)	invertSelection() (in WidgetTable)
I_S_ATTACH (in schrodinger.application.desmond.fep_gui)	INDXFMT (in schrodinger.infra.mm)	InvertSubMenu (in schrodinger.application.bioluminate.pml_menus)
I_S_ATTACH2 (in schrodinger.application.desmond.fep_gui)	Inf (in schrodinger.protein.assignment)	invoke() (in _ProtItem)
I_SUBST (in schrodinger.application.desmond.fep_gui)	inf (in schrodinger.protein.assignment)	invoke() (in _Callback)
icon (in schrodinger.application.desmond)	InfAutofill (in schrodinger.application.desmond.util)	invokeJobIncorporation() (in _Callback)
icon() (in PhaseDatabaseIconProvider)	infile (in schrodinger.application.lid.ligand_interaction_diagram_test)	invokeSelectCallback() (in WidgetTable)
icon() (in _CustomIconProvider)	Infinity (in schrodinger.protein.assignment)	inWorkspace() (in ProjectRow)
icons (in schrodinger.application.bioluminate.actions)	INFO (in schrodinger.utils.log)	io (in schrodinger.structutils)
IconType	info() (in schrodinger.maestro.maestro)	ion_action (in ConsensusToolBar)
Icosahedron (in schrodinger.graphics3d.polyhedron)	info() (in Stage)	ip_default (in JaguarOptions)
ID (in schrodinger.application.desmond.antlr3.treewizard)	info() (in AppFramework)	ir_intensity_precision (in NormalMode)
id (in FepJob)	info() (in AppFramework)	irc_point() (in schrodinger.application.jaguar.output)
id (in FepanaJob)	infra (in schrodinger)	irc_step (in JaguarOutput)
ideal_bond_angles (in schrodinger.protein.analysis)	infty (in schrodinger.protein.assignment)	irc_summary() (in schrodinger.application.jaguar.output)
ideal_bond_lengths (in schrodinger.protein.analysis)	init() (in schrodinger.application.moldescriptors)	is_atom_list() (in schrodinger.utils.sea)
IDENT (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	init_count (in BaseJob)	IS_CANVAS_LIC_CHECKED (in schrodinger.application.moldescriptors)
IDENT (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	init_count (in LocalhostJob)	is_cartesian_toggle() (in _Flex)
identifier (in StatisticalSummary)	initActionStates() (in ConsensusToolBar)	is_debugging (in schrodinger.application.desmond.simulation_block_data)
identify_all_hbonders() (in ProtAssign)	initEntry() (in DrawDdgPanel)	is_debugging (in schrodinger.application.desmond.simulation_block_test)
identify_species() (in ProtAssign)	initEntry() (in DrawFepPanel)	is_equal() (in schrodinger.utils.sea)
identifyGroups() (in AssignBondOrders)	initEntry() (in DrawLrmPanel)	IS_FALSE (in schrodinger.application.bioluminate.propfilter)
identityMat (in schrodinger.application.lid.ligand_interaction_diagram_gui)	initEntry() (in DrawMcPanel)	is_good() (in JobStatus)
IF (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	initEntry() (in DrawMiniPanel)	is_halogen (in _StructureAtom)
IF (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	initEntry() (in DrawSolventPanel)	is_maestro_elements() (in schrodinger.maestro.maestro)
If (in schrodinger.application.desmond.enhsamp)	initial (in Scan)	is_matched() (in _Atom)
if_() (in mexpParser)	INITIAL_FRAG_LIST (in _Pert)	is_meta() (in schrodinger.application.desmond.config)
if__return (in mexpParser)	initialise() (in McproSystemBuilder)	is_metal() (in schrodinger.application.prime.primefix)
ignoreEvent() (in PropertySelectorMenu)	initialize() (in MmJag)	is_metal() (in schrodinger.protein.findhets)
ILLEGAL_USAGE (in schrodinger.infra.licensing)	initialize() (in ModelSystemPanel)	is_minimize() (in schrodinger.application.desmond.config)
IMIDAZOLE (in schrodinger.structutils.interactions)	initialize() (in _ChopCap)	is_mopac_file() (in schrodinger.application.mopac)
IMPACT (in schrodinger.infra.mm)	initialize() (in _FileSelection)	is_parent() (in schrodinger.application.desmond.util)
IMPACT (in schrodinger.utils.preferences)	initialize() (in _Flex)	is_poseviewer_file() (in schrodinger.utils.fileutils)
IMPACT_COMBIGLIDE (in schrodinger.infra.licensing)	initialize() (in _Import)	is_powerof2() (in schrodinger.application.desmond.mdkey)
IMPACT_GLIDE (in schrodinger.infra.licensing)	initialize() (in _Monitor)	is_powerof2() (in schrodinger.application.desmond.util)
IMPACT_GLIDE_DESOLV (in schrodinger.infra.licensing)	initialize() (in _Neut)	is_powerof2() (in schrodinger.utils.sea)
IMPACT_LIAISON (in schrodinger.infra.licensing)	initialize() (in _SysSpec)	is_pv_file() (in schrodinger.application.glide.poseviewconvert)
IMPACT_MAIN (in schrodinger.infra.licensing)	initialize() (in Bitset)	is_remd() (in schrodinger.application.desmond.config)
IMPACT_MAX_BASE_LENGTH (in schrodinger.infra.mm)	initialize() (in Initializer)	is_restartable_version() (in schrodinger.application.desmond.cmj)
IMPACT_MAX_EXT_LENGTH (in schrodinger.infra.mm)	initialize() (in mmlist)	is_retriable() (in JobStatus)
IMPACT_MAX_LINE_LENGTH (in schrodinger.infra.mm)	initialize() (in Table)	is_same() (in Restrain)
IMPACT_PFF (in schrodinger.infra.licensing)	initialize() (in Project)	is_selected (in ProjectRow)
IMPACT_QSITE (in schrodinger.infra.licensing)	initialize() (in Minimizer)	is_shown() (in Entry)
import_all_data() (in ImportSumfile)	initialize() (in schrodinger.structutils.minimize)	is_shown() (in EntryGroup)
import_display_update() (in ModelSystemPanel)	initialize_cached_data() (in HuntCache)	is_shown_only() (in EntryGroup)
import_file() (in schrodinger.protein.getpdb)	initialize_res_placements_to_screen() (in schrodinger.application.lid.ligand_interaction_diagram)	is_subdir() (in schrodinger.application.desmond.util)
import_lig() (in _Import)	initialize_score_storage() (in hbond_cluster)	is_triclinic_box() (in schrodinger.application.desmond.config)
import_module_from_file() (in schrodinger.utils.imputils)	initializeProgram() (in TokenRewriteStream)	is_triclinic_box() (in schrodinger.application.desmond.mdkey)
import_newxp_qsar_file() (in FitNewxpReorgEnergy)	Initializer (in schrodinger.infra.mminit)	IS_TRUE (in schrodinger.application.bioluminate.propfilter)
import_pdb() (in schrodinger.protein.getpdb)	initializer (in _StructureDeleter)	is_valid() (in AslValidator)
import_perturbations() (in schrodinger.application.mcpro.perturbations)	INITKER (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	is_valid_jobname() (in schrodinger.utils.fileutils)
import_prot() (in _Import)	INITKER (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	is_vrun() (in schrodinger.application.desmond.config)
import_reflig() (in _Import)	initStyleOption() (in sketcherGUIMultiColumnToolBar)	is_water() (in schrodinger.application.desmond.remd)
IMPORT_STRUCTURES (in schrodinger.application.bioluminate.actions.configs)	inject_atom_grp() (in _AtomGroup)	is_watermap_type() (in schrodinger.application.lid.ligand_interaction_diagram)
IMPORT_TOOLBAR (in ViewerWindow)	inject_atom_grp() (in schrodinger.application.desmond.mdkey)	isaFrameSetDirectory() (in schrodinger.application.desmond.framesettools)
import_validation_results() (in FitNewxpReorgEnergy)	inject_macro() (in Key)	isAromatic() (in _Ring)
import_zmat() (in _Import)	inject_restr() (in schrodinger.application.desmond.cms)	isAtomAromatic() (in AssignBondOrders)
importFilterFile() (in LigfilterFrame)	inject_restr() (in _AtomGroup)	isAtomInSmallRing() (in AssignBondOrders)
importFromFile() (in SimplifiedSequenceViewer)	inject_restr() (in schrodinger.application.desmond.mdkey)	isChanged() (in CfgAtom)
importFromFilePaths() (in SimplifiedSequenceViewer)	INORGANIC (in schrodinger.application.bioluminate.pml_menus)	isChanged() (in Key)
importFromMaestro() (in SimplifiedSequenceViewer)	inp_content (in schrodinger.application.desmond.simulation_block_test)	isComplete() (in Job)
importFromPDB() (in SimplifiedSequenceViewer)	inp_file (in schrodinger.application.desmond.simulation_block_test)	isComplete() (in BaseJob)
importFromProjectTable() (in SimplifiedSequenceViewer)	INPLACE_PROPERTY (in SiteMatchLookup)	isComplete() (in JobDJ)
importFromWorkspace() (in SimplifiedSequenceViewer)	input (in schrodinger.application.jaguar)	isConnectedToResidue() (in _Residue)
importName() (in schrodinger.pipeline.pipeline)	input (in schrodinger.application.macromodel)	isDockableInMaestro() (in AppFramework)
importReceptor() (in proteinHandler)	input (in schrodinger.application.prime)	isDynamic() (in FrameAslSelection)
importRegion() (in FrameworkTemplate)	input (in schrodinger.application.qsite)	isDynamic() (in FrameIndexSelection)
importRegion() (in FrameworkTemplate)	input (in schrodinger.application.vsw)	isDynamic() (in FrameSliceSelection)
importStructure() (in Project)	input (in schrodinger.pipeline)	isDynamic() (in _AtomSelection)
importStructureFile() (in Project)	input_geometry_re (in schrodinger.application.jaguar.output)	isEmpty() (in FirstSecondaryStructure)
ImportSumfile (in schrodinger.application.mcpro.read_output)	input_menu_changed() (in App)	isEmpty() (in IntervalTree)
ImportToolBar (in schrodinger.application.bioluminate.ssv.toolbars)	input_menu_changedOLD() (in App)	isEmpty() (in SecondSecondaryStructure)
ImportWidget (in schrodinger.application.bioluminate.bwidgets)	inputconfig (in schrodinger.application)	isEnclosedBy() (in IntervalTree)
improper_torsion_data_set (in Report)	InputConfig (in schrodinger.application.inputconfig)	isEnclosedByDetailed() (in IntervalTree)
improper_torsions (in schrodinger.protein.analysis)	InputGroup (in schrodinger.application.desmond.gui)	isEquivalent() (in GenOptions)
improperfbhw() (in _FFIO)	inputMethodEvent() (in sketcher)	isEquivalent() (in Structure)
imputils (in schrodinger.utils)	inputMethodEvent() (in sketcherGUIMultiColumnToolBar)	isFilled() (in Grid)
IN (in schrodinger.application.moldescriptors)	inputMethodEvent() (in sketcherView)	isFilled() (in PhaseDB)
in_alpha (in schrodinger.application.lid.lid2d.draw)	inputsForStagesDefined() (in Pipeline)	isFilled() (in PipeIO)
IN_COMPLEX (in schrodinger.application.desmond.fep_gui)	inputState() (in JobInputFrame)	isFilled() (in Structures)
in_fname (in schrodinger.application.desmond.predict_remd_temp)	inputState() (in JobInputFrame)	isFilled() (in Text)
in_maestro (in schrodinger.analysis.enrichment)	inRing() (in Structure)	isfinite (in schrodinger.protein.assignment)
in_maestro (in schrodinger.ui.rama)	inscode (in Cut)	isGroupShown() (in Primitive)
IN_PURE_SOLVENT (in schrodinger.application.desmond.fep_gui)	inscode (in _Residue)	isHeteroaromatic() (in _Ring)
IN_VACUUM (in schrodinger.application.desmond.fep_gui)	inscode (in _StructureAtom)	isInDisplayedChain() (in HomologyRama)
IN_WORKSPACE (in schrodinger.maestro.maestro)	INSCODES (in schrodinger.protein.captermini)	isinf (in schrodinger.protein.assignment)
IN_WORKSPACE (in schrodinger.project)	insert() (in MultiListbox)	isKeyConsistentWithPanel() (in GuiApp)
in_workspace (in ProjectRow)	insert() (in ButtonBox)	isMetal() (in schrodinger.structutils.assignbondorders)
inBetween() (in schrodinger.application.lid.lid2d.utils)	insert() (in NoteBook)	isnan (in schrodinger.protein.assignment)
incfg_file() (in JobInput)	insert() (in PanedWidget)	isNil() (in DebugTreeAdaptor)
include() (in AddDefinitionDialog)	insert() (in List)	isNil() (in BaseTree)
included (in EntrySurface)	insertAfter() (in TokenRewriteStream)	isNil() (in BaseTreeAdaptor)
INCLUDED_ENTRIES (in schrodinger.ui.qt.appframework)	insertBefore() (in TokenRewriteStream)	isNil() (in CommonErrorNode)
INCLUDED_ENTRIES (in JobInputFrame)	InsertBeforeOp (in schrodinger.application.desmond.antlr3.streams)	isNil() (in CommonTree)
INCLUDED_ENTRY (in schrodinger.ui.qt.appframework)	insertColumn() (in Table)	isNil() (in Tree)
INCLUDED_ENTRY (in JobInputFrame)	InsertPolicy	isNil() (in TreeAdaptor)
included_rows (in EntryGroup)	insertRow() (in Table)	isOnlySingleBonded() (in AssignBondOrders)
included_rows (in Project)	install_opener() (in schrodinger.utils.urllib)	isOrthogonal() (in HydrogenBondFinder)
IncludeInSelection (in schrodinger.application.bioluminate.pml_menus)	int	isPhaseDatabase() (in PhaseDatabaseIconProvider)
includeOnly() (in ProjectRow)	INT (in schrodinger.utils.preferences)	isQueue() (in Host)
includes() (in Definition)	IntegrationTab (in schrodinger.application.desmond.gui)	isQueued() (in Job)
IncludeSubMenu (in schrodinger.application.bioluminate.pml_menus)	INTERACTION_NAMES (in StructuralInteractionFingerprintGenerator)	isRingAaromatic() (in AssignBondOrders)
IncludeVisibleInSelection (in schrodinger.application.bioluminate.pml_menus)	interactionfp (in schrodinger.structutils)	isRowSelected() (in Table)
inContext() (in TreeParser)	interactions (in schrodinger.structutils)	isSelected() (in _Cell)
INCORP_NAME (in _SdIncorpFrame)	InteractionTab (in schrodinger.application.desmond.gui)	isSelected() (in _Row)
INCORP_VAL (in _SdIncorpFrame)	InterfaceMixin (in schrodinger.application.bioluminate.pml_menus)	isShown() (in Primitive)
increment_state_of_changeable() (in ProtAssign)	InterfacePreset (in schrodinger.application.bioluminate.pml_menus)	isStandardResidue() (in _Residue)
IncrementalTimer (in schrodinger.utils.timers)	interior() (in AppFramework)	isTERZ() (in ResidueTools)
incrementAuxSelected() (in PropertySelector)	interior() (in AppFramework)	isValid() (in License)
index (in _FEPIOSubBlock)	interior() (in _ScrolledDouble)	items() (in PairDict)
index (in _FFIOSubBlock)	INTERNAL_ERROR (in schrodinger.infra.licensing)	ITER (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
index (in _OtherBlock)	INTERVAL (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)	ITER (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
index (in ProjectRow)	INTERVAL (in schrodinger.application.desmond.enhanced_sampling.mexpParser)	Iter (in schrodinger.application.desmond.enhsamp)
index (in _StructureAtom)	IntervalTree	iter() (in mexpParser)
index (in _FFVirtual)	intervaltree2d (in schrodinger.application.lid.lid2d)	iter_return (in mexpParser)
index() (in DebugTokenStream)	IntervalTreeNode	iterate_to_convergence() (in hbond_cluster)
index() (in ANTLRStringStream)	IntStream (in schrodinger.application.desmond.antlr3.streams)	iterateRows() (in ResiduesModel)
index() (in CommonTokenStream)	IntVar (in schrodinger.ui.widget.tkinterwidget)	iterInputs() (in Stage)
index() (in IntStream)	INVALID_NODE (in schrodinger.application.desmond.antlr3.tree)	iteritems() (in PairDict)
index() (in CommonTreeNodeStream)	INVALID_PROJECT_HANDLE (in schrodinger.project)	iterkeys() (in PairDict)
index() (in TreeWizard)	INVALID_SIGNATURE (in schrodinger.infra.licensing)	itervalues() (in PairDict)