Home
Trees
Indices
Help
Suite 2012 Schrodinger Python API
[
hide private
]
[
frames
] |
no frames
]
[
Identifiers
|
To Do
|
Deprecations
]
Identifier Index
[
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
_
]
N
NA
(in
schrodinger.application.glide.glide
)
neut_protein()
(in
_Neut
)
non_default_print_options()
(in
schrodinger.application.jaguar.output
)
NAME
(in
StageBase
)
NEUTRAL_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
non_het_resnames
(in
schrodinger.protein.findhets
)
NAME
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
NEUTRAL_RESIDUES
(in
schrodinger.structutils
)
NON_POLAR_RESIDUES
(in
schrodinger.structutils
)
NAME
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
NEVERCHECKOUT
(in
schrodinger.infra.licensing
)
NON_RETRIABLE_FAILURE
(in
JobStatus
)
name
(in
_FEPIO
)
NEW_CONFIG_DIR
(in
schrodinger.application.desmond.mdkey
)
nonbonded_cutoff
(in
Minimizer
)
name
(in
_FFIO
)
new_License()
(in
schrodinger.infra._licensing
)
NONE
(in
schrodinger.application.bioluminate.pml_menus
)
name
(in
_FFIOVdwtype
)
newaxis
(in
schrodinger.protein.assignment
)
NONE
(in
schrodinger.project
)
name
(in
_OtherBlock
)
newconfigdir
(in
schrodinger.application.desmond.mplchart
)
NONE
(in
SecondaryStructure
)
NAME
(in
BoxSize
)
NEWLINE
(in
schrodinger.application.desmond.enhanced_sampling.mexpLexer
)
NONE_IS_LAST
(in
schrodinger.structutils.sort
)
NAME
(in
E_f
)
NEWLINE
(in
schrodinger.application.desmond.enhanced_sampling.mexpParser
)
NONETOBORROW
(in
schrodinger.infra.licensing
)
NAME
(in
E_k
)
newSet()
(in
AsetFrame
)
NONETWORK
(in
schrodinger.infra.licensing
)
NAME
(in
E_x
)
newxp_qsar_file
(in
schrodinger.application.glide.newxp_reorg_fit
)
NONPOLAR_HEAVY_ELEMENTS
(in
schrodinger.application.bioluminate.protein
)
NAME
(in
Energy
)
newxp_reorg_fit
(in
schrodinger.application.glide
)
NONPOLAR_RESIDUES
(in
schrodinger.application.bioluminate.protein
)
NAME
(in
Job_Details
)
newxp_steps
(in
schrodinger.application.glide.xp6classes
)
NOREADLIC
(in
schrodinger.infra.licensing
)
NAME
(in
PotentialEnergy
)
newxpdicetemplate
(in
schrodinger.application.glide.xp6classes
)
norm()
(in
schrodinger.application.desmond.cms
)
NAME
(in
Pressure
)
NewxpJobdata
(in
schrodinger.application.glide.xp6classes
)
norm()
(in
schrodinger.application.desmond.mdkey
)
NAME
(in
T_0
)
next()
(in
TokenSource
)
normalize()
(in
Grid3D
)
NAME
(in
Temperature
)
next()
(in
CMSReader
)
normalizeArray2d()
(in
schrodinger.application.lid.lid2d.utils
)
NAME
(in
V
)
next()
(in
_Step
)
normalizeArray3d()
(in
schrodinger.application.lid.lid2d.utils
)
NAME
(in
Analysis
)
next()
(in
line_enumerate
)
NormalMode
(in
schrodinger.application.jaguar.output
)
NAME
(in
AssignForcefield
)
next()
(in
EmptyIterator
)
NOSERVCAP
(in
schrodinger.infra.licensing
)
NAME
(in
BuildGeometry
)
next()
(in
MaestroReader
)
NOSERVER
(in
schrodinger.infra.licensing
)
NAME
(in
Concluder
)
next()
(in
MaestroReaderWithPositions
)
NOSERVICE
(in
schrodinger.infra.licensing
)
NAME
(in
Extern
)
next()
(in
MaestroTextReader
)
NOSERVRESP
(in
schrodinger.infra.licensing
)
NAME
(in
FepAnalysis
)
next()
(in
Mol2Reader
)
NOSERVSUPP
(in
schrodinger.infra.licensing
)
NAME
(in
FepVrun
)
next()
(in
PDBReader
)
NOSOCKET
(in
schrodinger.infra.licensing
)
NAME
(in
LambdaHopping
)
next()
(in
SDReader
)
NOSUCHATTR
(in
schrodinger.infra.licensing
)
NAME
(in
McproSimulate
)
next()
(in
SmilesCsvReader
)
NOT_AROMATIC
(in
schrodinger.structutils.assignbondorders
)
NAME
(in
McproStageBase
)
next()
(in
SmilesReader
)
NOT_ASSIGNED
(in
schrodinger.structutils.assignbondorders
)
NAME
(in
McproSystemBuilder
)
next()
(in
StructureReader
)
NOT_CONTAINS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
Minimize
)
next()
(in
MultiFileReader
)
not_equal
(in
schrodinger.protein.assignment
)
NAME
(in
Multisim
)
next_prime()
(in
schrodinger.application.desmond.autopartition
)
NOT_EQUALS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
Primer
)
nextafter
(in
schrodinger.protein.assignment
)
NOT_EXISTS
(in
schrodinger.application.bioluminate.propfilter
)
NAME
(in
ReplicaExchange
)
nextBranch()
(in
AddNeighborGroups
)
NOT_IN_WORKSPACE
(in
schrodinger.maestro.maestro
)
NAME
(in
Simulate
)
nextChar()
(in
_MySplit
)
NOT_IN_WORKSPACE
(in
schrodinger.project
)
NAME
(in
SolvatePocket
)
nextMessage()
(in
_Backend
)
NOT_INCORPORATABLE
(in
schrodinger.maestro.maestro
)
NAME
(in
Stop
)
nextNode()
(in
RewriteRuleNodeStream
)
NOT_MY_JOB
(in
schrodinger.maestro.maestro
)
NAME
(in
SystemBuilder
)
nextNode()
(in
RewriteRuleSubtreeStream
)
NOT_THIS_HOST
(in
schrodinger.infra.licensing
)
NAME
(in
Task
)
nextNode()
(in
RewriteRuleTokenStream
)
NoteBook
(in
schrodinger.ui.widget.pmwwidget
)
NAME
(in
Trajectory
)
nextOutFile()
(in
PostLigPrepStage
)
NoteBookButton
(in
schrodinger.ui.widget.tkinterwidget
)
NAME
(in
Trim
)
nextToken()
(in
Lexer
)
NOTLICADMIN
(in
schrodinger.infra.licensing
)
NAME
(in
Vrun
)
nextToken()
(in
TokenSource
)
NOTONSERVER
(in
schrodinger.infra.licensing
)
NAME
(in
WaterMap
)
nextToken()
(in
RewriteRuleTokenStream
)
NOTRLSUPPORT
(in
schrodinger.infra.licensing
)
NAME
(in
WaterMapCluster
)
nextToken()
(in
TreePatternLexer
)
NOTTHISHOST
(in
schrodinger.infra.licensing
)
NAME
(in
WaterMapPostAnalysis
)
nextTree()
(in
RewriteRuleElementStream
)
noViableAlt()
(in
DFA
)
NAME
(in
DesmondTyper
)
NFLEXRATOMPROPS
(in
schrodinger.infra.mm
)
NoViableAltException
(in
schrodinger.application.desmond.antlr3.exceptions
)
NAME
(in
McproTyper
)
NFLEXRCTPROPS
(in
schrodinger.infra.mm
)
NPA
(in
schrodinger.infra.mm
)
NAME
(in
TyperBase
)
nfrzmm()
(in
schrodinger.application.qsite.output
)
nparticles()
(in
_FepFrame
)
NAME
(in
WatermapTyper
)
nhcaps()
(in
schrodinger.application.qsite.output
)
NSTRUCTS
(in
schrodinger.utils.cmdline
)
name
(in
JaguarInput
)
NICE
(in
schrodinger.utils.cmdline
)
nucrep()
(in
schrodinger.application.jaguar.output
)
name
(in
EntryGroup
)
nil()
(in
DebugTreeAdaptor
)
nucrep_precision
(in
JaguarResults
)
name
(in
_Chain
)
nil()
(in
BaseTreeAdaptor
)
NULL
(in
schrodinger.infra.mm
)
name
(in
_StructureAtom
)
nil()
(in
TreeAdaptor
)
Null
(in
schrodinger.infra.mm
)
name
(in
_FFVdwtype
)
nilNode()
(in
DebugEventListener
)
null()
(in
ProteinStructureQualityViewer
)
name1
(in
_FFIOVdwtypescombined
)
nilNode()
(in
DebugEventSocketProxy
)
Num_aliphatic_rings()
(in
schrodinger.utils.ligfilter
)
name2
(in
_FFIOVdwtypescombined
)
nilNode()
(in
TraceDebugEventListener
)
num_args
(in
schrodinger.application.desmond.predict_remd_temp
)
nameContextCallback()
(in
SimplifiedSequenceViewer
)
NINF
(in
schrodinger.protein.assignment
)
Num_aromatic_rings()
(in
schrodinger.utils.ligfilter
)
NAN
(in
schrodinger.protein.assignment
)
NJOBS
(in
schrodinger.application.macromodel.paraUtils
)
Num_atoms()
(in
schrodinger.utils.ligfilter
)
NaN
(in
schrodinger.protein.assignment
)
NJOBS
(in
schrodinger.utils.cmdline
)
NUM_BITS_PER_RESIDUE
(in
StructuralInteractionFingerprintGenerator
)
nan
(in
schrodinger.protein.assignment
)
nmr_precision
(in
JaguarAtomicResults
)
Num_chiral_centers()
(in
schrodinger.utils.ligfilter
)
navbar
(in
schrodinger.application.desmond.guide
)
NO_EXECUTION
(in
schrodinger.application.macromodel.paraUtils
)
NUM_CONSTRAINT
(in
Constraint
)
navbar
(in
schrodinger.application.mcpro.guide
)
NO_HYDROGENS
(in
schrodinger.infra.mm
)
num_constraint()
(in
Constraint
)
navbar_cmd_chop()
(in
ModelSystemPanel
)
no_next_arg
(in
schrodinger.application.lid.ligand_interaction_diagram
)
num_cpu()
(in
schrodinger.application.desmond.config
)
navbar_cmd_flex()
(in
ModelSystemPanel
)
NO_OS
(in
schrodinger.utils.preferences
)
Num_heavy_atoms()
(in
schrodinger.utils.ligfilter
)
navbar_cmd_monitor()
(in
ModelSystemPanel
)
NO_SERVER_IN_FILE
(in
schrodinger.infra.licensing
)
Num_heteroaromatic_rings()
(in
schrodinger.utils.ligfilter
)
navbar_cmd_neut()
(in
ModelSystemPanel
)
no_stack()
(in
schrodinger.application.jaguar
)
num_lambda_window()
(in
schrodinger.application.desmond.config
)
navbar_toggle()
(in
ModelSystemPanel
)
NO_STEREO
(in
schrodinger.structure
)
Num_molecules()
(in
schrodinger.utils.ligfilter
)
nb_cutoff()
(in
schrodinger.application.qsite.output
)
NO_TYPE
(in
schrodinger.utils.preferences
)
Num_negative_atoms()
(in
schrodinger.utils.ligfilter
)
nb_update()
(in
schrodinger.application.qsite.output
)
NOADMINAPI
(in
schrodinger.infra.licensing
)
Num_positive_atoms()
(in
schrodinger.utils.ligfilter
)
nbasis()
(in
schrodinger.application.jaguar.output
)
noautofit_call()
(in
schrodinger.application.desmond.maestro
)
num_replica()
(in
schrodinger.application.desmond.config
)
nbytes
(in
schrodinger.protein.assignment
)
NOBORROWCOMP
(in
schrodinger.infra.licensing
)
Num_residues()
(in
schrodinger.utils.ligfilter
)
NC
(in
schrodinger.application.macromodel.paraUtils
)
NOBORROWSUPP
(in
schrodinger.infra.licensing
)
num_retry()
(in
RetryTimer
)
ncl
(in
schrodinger.application.lid.lid2d.draw
)
NOCLOCKCHECK
(in
schrodinger.infra.licensing
)
Num_rings()
(in
schrodinger.utils.ligfilter
)
nconmm()
(in
schrodinger.application.qsite.output
)
NOCONFFILE
(in
schrodinger.infra.licensing
)
Num_rotatable_bonds()
(in
schrodinger.utils.ligfilter
)
ncpusChanged()
(in
_SdDetailFrame
)
Node
(in
schrodinger.application.desmond.enhsamp
)
num_temp
(in
schrodinger.application.desmond.predict_remd_temp
)
ncpusModified()
(in
_SdJobFrame
)
NODEFAULT
(in
schrodinger.utils.preferences
)
num_wildcard()
(in
Atom
)
ncpusModified()
(in
_SdSubjobFrame
)
NODONGLE
(in
schrodinger.infra.licensing
)
number
(in
_Molecule
)
ncuts()
(in
schrodinger.application.qsite.output
)
NODONGLEDRIVER
(in
schrodinger.infra.licensing
)
number_by_entry
(in
_StructureAtom
)
NDDO
(in
schrodinger.application.qsite.input
)
NOE
(in
schrodinger.application.glide.glide
)
number_by_molecule
(in
_StructureAtom
)
nddo_atoms()
(in
schrodinger.application.qsite.output
)
NOEConstraint
(in
schrodinger.application.glide.glide
)
NUMBER_OPS
(in
schrodinger.application.bioluminate.propfilter
)
nddo_hcaps()
(in
schrodinger.application.qsite.output
)
NOFEATSET
(in
schrodinger.infra.licensing
)
number_regexs
(in
schrodinger.infra.propedit
)
NEAR_METHOD_NAMEMAP
(in
InteractionTab
)
NOFEATURE
(in
schrodinger.infra.licensing
)
number_REs
(in
schrodinger.infra.propedit
)
nearestIndexToPoint()
(in
Grid3D
)
nofitgrow_call()
(in
schrodinger.application.desmond.maestro
)
numeric_prop_RE
(in
schrodinger.infra.propedit
)
nearMethodChanged()
(in
InteractionTab
)
NOFLEXLMINIT
(in
schrodinger.infra.licensing
)
numerical_freqs()
(in
schrodinger.application.jaguar.output
)
need_next_arg
(in
schrodinger.application.lid.ligand_interaction_diagram
)
NOGEOPT
(in
schrodinger.application.moldescriptors
)
NumericalDatabaseCriterion
(in
schrodinger.application.bioluminate.propfilter
)
needsUpdateFromProjectTable()
(in
sketcher
)
NOJOBID
(in
schrodinger.utils.cmdline
)
NumericLineEdit
(in
schrodinger.application.bioluminate.bwidgets
)
negative
(in
schrodinger.protein.assignment
)
NOKEYDATA
(in
schrodinger.infra.licensing
)
numGroupsChanged()
(in
EnsembleTab
)
NEGATIVES
(in
schrodinger.structutils.interactions
)
NOLAUNCH
(in
schrodinger.utils.cmdline
)
numHeavyAtoms()
(in
WriteInputs
)
NETWORK
(in
schrodinger.utils.fileutils
)
NOLIMIT
(in
schrodinger.job.queue
)
NZERO
(in
schrodinger.protein.assignment
)
neut_display_update()
(in
ModelSystemPanel
)
NOLOCAL
(in
schrodinger.utils.cmdline
)
NEUT_NAME
(in
ModelSystem
)
NOMM
(in
MopacCalculation
)
Home
Trees
Indices
Help
Suite 2012 Schrodinger Python API
Generated by Epydoc 3.0.1 on Fri Aug 31 21:31:26 2012
http://epydoc.sourceforge.net