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Suite 2012 Schrodinger Python API
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]
R
r
(in
MaestroArrow
)
remove_stereo_annotation()
(in
schrodinger.structutils.smiles
)
restart_name()
(in
schrodinger.application.jaguar.output
)
r
(in
MaestroSphere
)
remove_tag()
(in
Sea
)
restart_re
(in
schrodinger.application.jaguar.output
)
r_
(in
schrodinger.protein.assignment
)
remove_temp_dir()
(in
schrodinger.application.desmond.mplchart
)
RESTARTING
(in
schrodinger.pipeline.pipeline
)
r_clone
(in
schrodinger.application.desmond.fepana
)
remove_zero_order_bonds()
(in
ProtAssign
)
restore()
(in
Rotamers
)
rad2deg
(in
schrodinger.protein.assignment
)
removeAction()
(in
Factory
)
restore_cursor()
(in
schrodinger.application.bioluminate.pml_menus
)
RADIAN_CONVERSION_FACTOR
(in
schrodinger.infra.mm
)
removeAllRows()
(in
WidgetTable
)
restore_stages()
(in
Engine
)
radians
(in
schrodinger.protein.assignment
)
RemoveHydrogens
(in
schrodinger.application.bioluminate.pml_menus
)
restore_zobs()
(in
ProtAssign
)
RADIOBUTTON
(in
Table
)
removeKey()
(in
Definition
)
restoreCursor()
(in
AppFramework
)
Radiobutton
(in
schrodinger.ui.widget.tkinterwidget
)
removeOneRow()
(in
AtomGroupModel
)
RestoreTitlesStage
(in
schrodinger.pipeline.stages.gencodes
)
RadiobuttonCell
(in
schrodinger.ui.widgettable
)
removeOneRow()
(in
PosResModel
)
Restrain
(in
schrodinger.application.desmond.cms
)
RadiobuttonColumn
(in
schrodinger.ui.widgettable
)
removeOrientDummyAtoms()
(in
schrodinger.application.mcpro.zmat
)
restraint()
(in
_FFIO
)
RadioSelect
(in
schrodinger.ui.widget.pmwwidget
)
RemovePC
(in
schrodinger.application.bioluminate.pml_menus
)
restraint_builtin_prop
(in
schrodinger.trajectory.ffstructure
)
radius
(in
MaestroArrow
)
removeRowNumbers()
(in
ResiduesModel
)
RestraintsTab
(in
schrodinger.application.desmond.gui
)
radius
(in
MaestroSphere
)
removeRows()
(in
WidgetTable
)
restrictByChains()
(in
DataModelWithChart
)
RadiusOfGyration
(in
schrodinger.trajectory.analysis
)
removeSearchType()
(in
DBManagePanel
)
RestrictSelection
(in
schrodinger.application.bioluminate.pml_menus
)
RAISE
(in
schrodinger.protein.assignment
)
removeSelectedRow()
(in
WidgetTable
)
RestrictSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
raise_main_window()
(in
schrodinger.maestro.maestro
)
removeSelectedRows()
(in
WidgetTable
)
RestrictToInorganic
(in
schrodinger.application.bioluminate.pml_menus
)
rama
(in
schrodinger.ui
)
removeToolBar()
(in
ViewerWindow
)
RestrictToOrganic
(in
schrodinger.application.bioluminate.pml_menus
)
Rama
(in
schrodinger.ui.rama
)
REMOVETOOSOON
(in
schrodinger.infra.licensing
)
RestrictToPolymer
(in
schrodinger.application.bioluminate.pml_menus
)
Ramachandran
(in
schrodinger.trajectory.analysis
)
RemoveWaters
(in
schrodinger.application.bioluminate.pml_menus
)
RestrictToSolvent
(in
schrodinger.application.bioluminate.pml_menus
)
randn()
(in
schrodinger.protein.assignment
)
Rename
(in
schrodinger.application.bioluminate.pml_menus
)
RestrictToVisible
(in
schrodinger.application.bioluminate.pml_menus
)
random_string()
(in
schrodinger.application.desmond.util
)
rename()
(in
Entry
)
results_window
(in
schrodinger.application.bioluminate.pml_menus
)
RandVelFrame
(in
schrodinger.application.desmond.gui
)
rename_atom_property()
(in
schrodinger.application.desmond.struc
)
ResultsWindow
(in
schrodinger.application.bioluminate.pml_menus
)
range()
(in
Bitset
)
renameProperty()
(in
schrodinger.infra.propedit
)
RESVFOROTHERS
(in
schrodinger.infra.licensing
)
ranges
(in
schrodinger.infra.propedit
)
render
(in
schrodinger.application.lid.lid2d
)
retranslateUi()
(in
Ui_Form
)
RAW_AFEP
(in
DesmondTyper
)
render_2d_image()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
retranslateUi()
(in
Ui_Form
)
RAW_FEP
(in
DesmondTyper
)
render_model
(in
schrodinger.application.lid.lid2d.render
)
retranslateUi()
(in
Ui_Dialog
)
RAW_FEP
(in
McproTyper
)
renderer
(in
schrodinger.application.lid.lid2d.render
)
retranslateUi()
(in
Ui_Form
)
RAW_REGULAR
(in
DesmondTyper
)
RenderFlag
retranslateUi()
(in
Ui_Dialog
)
RAW_REGULAR
(in
McproTyper
)
RenderFlags
retranslateUi()
(in
Ui_Form
)
RAW_REGULAR
(in
WatermapTyper
)
renderSurface()
(in
SurfaceRender
)
RETRIABLE_FAILURE
(in
JobStatus
)
raw_val
(in
Atom
)
renumber_structures
(in
ConformerRmsd
)
RETRIES
(in
schrodinger.utils.cmdline
)
raw_val
(in
List
)
renumberByMolecule()
(in
FixForPrime
)
retrieve_ent()
(in
schrodinger.protein.getpdb
)
raw_val
(in
Map
)
reorder_atoms()
(in
schrodinger.structutils.build
)
retrieve_pdb()
(in
schrodinger.protein.getpdb
)
Ray
(in
schrodinger.application.bioluminate.pml_menus
)
reorder_solute()
(in
WaterMapInput
)
retry_http_basic_auth()
(in
ProxyBasicAuthHandler
)
RCE
(in
schrodinger.application.macromodel.input
)
reorderByConnectivity()
(in
CapTermini
)
retry_http_digest_auth()
(in
ProxyDigestAuthHandler
)
RCE_SPECS
(in
schrodinger.application.macromodel.input
)
reorderResidues()
(in
proteinHandler
)
retry_interval()
(in
RetryTimer
)
re_str
(in
schrodinger.infra.propedit
)
ReorgFitting
(in
schrodinger.application.glide.newxp_reorg_fit
)
RETRY_INTERVAL_BASE
(in
RetryTimer
)
read()
(in
SystemBuilderInput
)
repair_box_vector()
(in
schrodinger.application.desmond.repair_cms
)
RetryTimer
(in
schrodinger.application.desmond.cmj
)
read()
(in
schrodinger.application.jaguar.input
)
repair_cms
(in
schrodinger.application.desmond
)
ReturnCode
(in
schrodinger.infra.mm
)
read()
(in
schrodinger.job.jobcontrol
)
REPLACE
(in
schrodinger.project
)
retype()
(in
Structure
)
read()
(in
Structure
)
replace()
(in
TokenRewriteStream
)
retype()
(in
_StructureAtom
)
read_all_ct()
(in
schrodinger.application.desmond.struc
)
replace_slot()
(in
schrodinger.application.bioluminate.actions.factory
)
reverse_iter()
(in
LinkedList
)
read_anni_fep_cms()
(in
schrodinger.application.desmond.struc
)
replaceChildren()
(in
DebugTreeAdaptor
)
revert_to_original()
(in
Rama
)
read_cluster_file()
(in
WaterMapAnaJob
)
replaceChildren()
(in
BaseTree
)
revert_to_saved()
(in
Rama
)
read_cms()
(in
schrodinger.trajectory.cmsstructure
)
replaceChildren()
(in
CommonTreeAdaptor
)
revertInitialRunParams()
(in
WriteInputs
)
read_constraints()
(in
schrodinger.application.glide.glide
)
replaceChildren()
(in
CommonTreeNodeStream
)
rewind()
(in
DebugEventListener
)
read_csv()
(in
EnsembleSelection
)
replaceChildren()
(in
Tree
)
rewind()
(in
DebugEventSocketProxy
)
read_ct()
(in
schrodinger.structure
)
replaceChildren()
(in
TreeAdaptor
)
rewind()
(in
DebugTokenStream
)
read_dE_file()
(in
schrodinger.application.desmond.fepana
)
replaceChildren()
(in
TreeNodeStream
)
rewind()
(in
ANTLRStringStream
)
read_exp_dg()
(in
EnsembleSelection
)
REPLACECOMMA
(in
schrodinger.application.moldescriptors
)
rewind()
(in
CommonTokenStream
)
read_fep_cms()
(in
schrodinger.application.desmond.struc
)
ReplaceOp
(in
schrodinger.application.desmond.antlr3.streams
)
rewind()
(in
IntStream
)
read_frame()
(in
_FepTrajectory
)
REPLICA_EXCHANGE
(in
schrodinger.application.desmond.gui
)
rewind()
(in
CommonTreeNodeStream
)
read_keys()
(in
schrodinger.utils.ligfilter
)
ReplicaExchange
RewriteCardinalityException
(in
schrodinger.application.desmond.antlr3.tree
)
read_meta_cfg()
(in
schrodinger.application.desmond.meta
)
replot()
(in
SliderPlot
)
RewriteEarlyExitException
(in
schrodinger.application.desmond.antlr3.tree
)
read_mode
(in
CMSReader
)
replotChart()
(in
MultiReportWithChart
)
RewriteEmptyStreamException
(in
schrodinger.application.desmond.antlr3.tree
)
read_mode
(in
MaestroReader
)
Report
(in
schrodinger.protein.analysis
)
RewriteOperation
(in
schrodinger.application.desmond.antlr3.streams
)
read_mode
(in
MaestroTextReader
)
report()
(in
Calculator
)
RewriteRuleElementStream
(in
schrodinger.application.desmond.antlr3.tree
)
read_only
(in
ProjectRow
)
report()
(in
data_set
)
RewriteRuleNodeStream
(in
schrodinger.application.desmond.antlr3.tree
)
READ_ONLY_COLOR
(in
schrodinger.antibody_db_manage_gui
)
report()
(in
schrodinger.protein.assignment
)
RewriteRuleSubtreeStream
(in
schrodinger.application.desmond.antlr3.tree
)
read_output
(in
schrodinger.application.mcpro
)
report2d
(in
schrodinger.application
)
RewriteRuleTokenStream
(in
schrodinger.application.desmond.antlr3.tree
)
read_text()
(in
SystemBuilderInput
)
Report2D
(in
schrodinger.application.report2d
)
rgb
(in
schrodinger.application.bioluminate.pml_menus
)
read_trj_idx_file()
(in
schrodinger.trajectory.analyze_trajectories
)
report_data_points()
(in
data_set
)
rgb
(in
Color
)
read_unique_field()
(in
schrodinger.pipeline.pipeutils
)
Reporter
RIBBON_RAINBOW_COLORS
(in
schrodinger.application.bioluminate.pml_menus
)
read_zmat()
(in
Zmat
)
reportError()
(in
DebugParser
)
RIBBON_STYLE
(in
schrodinger.application.bioluminate.pml_menus
)
readAgain()
(in
Job
)
reportError()
(in
BaseRecognizer
)
right()
(in
WidgetTable
)
readCommand()
(in
GuiApp
)
reportError()
(in
Lexer
)
right_click_callback_add()
(in
schrodinger.maestro.maestro
)
readComplexes()
(in
NewxpJobdata
)
reportError()
(in
mexpLexer
)
right_click_callback_remove()
(in
schrodinger.maestro.maestro
)
readData()
(in
schrodinger.infra.propedit
)
reportError()
(in
mexpParser
)
RIGHT_DOCK_AREA
(in
schrodinger.ui.qt.appframework
)
ReadDialog
(in
schrodinger.ui.appframework
)
ReportFrame
(in
schrodinger.application.bioluminate.protein_report_widget
)
right_shift
(in
schrodinger.protein.assignment
)
ReadDialog
(in
schrodinger.ui.qt.appframework
)
reportParameters()
(in
Pipeline
)
rigidify_geo_vars()
(in
Zmat
)
readFile()
(in
Pipeline
)
reportParameters()
(in
Stage
)
ring
(in
TextualStructure
)
readFilterCriteria()
(in
LigfilterFrame
)
reposition()
(in
_ScrolledDouble
)
ring()
(in
Structure
)
readNewFormat()
(in
Pipeline
)
rept_file_ext
(in
Calculator
)
ring_centroid()
(in
schrodinger.structutils.interactions
)
readNewFormatStage()
(in
Pipeline
)
request
(in
schrodinger.application.desmond.ana
)
RING_MARKER
(in
_RingMut
)
readNewFormatVariable()
(in
Pipeline
)
requestCpus()
(in
Pipeline
)
RING_MUTATION
(in
schrodinger.application.desmond.fep_gui
)
readNewxpInputFile()
(in
NewxpJobdata
)
requiredProduct()
(in
Stage
)
rint
(in
schrodinger.protein.assignment
)
readValueList()
(in
SubSetStage
)
requiredProductRuntime()
(in
Stage
)
RM1
(in
schrodinger.application.mopac
)
readyToRun()
(in
StageJob
)
requirement
(in
LocalhostJob
)
rmsd
(in
schrodinger.application.vsw.stages
)
reassignHets()
(in
FixForPrime
)
requirement
(in
RequirementsJob
)
rmsd
(in
schrodinger.pipeline.stages
)
reassignResNums()
(in
FixForPrime
)
RequirementsJob
(in
schrodinger.job.queue
)
rmsd
(in
schrodinger.structutils
)
rebuild_scripts_menu()
(in
schrodinger.maestro.maestro
)
requires_energy()
(in
_KeywordProcessor
)
RMSD
(in
schrodinger.trajectory.analysis
)
rebuild_workflows_menu()
(in
schrodinger.maestro.maestro
)
res_can_be_capped()
(in
schrodinger.protein.captermini
)
rmsd2d
(in
schrodinger.trajectory
)
recalc()
(in
_StructureChainIterator
)
RES_MARKER
(in
_ProMut
)
rmsd_comb()
(in
EnsembleSelection
)
recalc()
(in
_StructureMoleculeIterator
)
res_marker_value
(in
_Site
)
RMSDCalculator
(in
schrodinger.trajectory.rmsd2d
)
recalc()
(in
_StructureRingIterator
)
rescale_ff()
(in
schrodinger.application.desmond.remd
)
RMSDMultiprocessing
(in
schrodinger.trajectory.rmsd2d
)
receivers()
(in
sketcher
)
rescale_ff_solute_tempering()
(in
schrodinger.application.desmond.remd
)
RmsdStage
(in
schrodinger.pipeline.stages.rmsd
)
receivers()
(in
sketcherGUIMultiColumnToolBar
)
reset()
(in
AdvancedOptionsPanel
)
RMSDSyntax
(in
schrodinger.application.desmond.enhanced_sampling.FcnTypes
)
receivers()
(in
sketcherView
)
reset()
(in
PresetAction
)
RMSDThreading
(in
schrodinger.trajectory.rmsd2d
)
RecentCarbonColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
reset()
(in
BaseRecognizer
)
RMSF
(in
schrodinger.trajectory.analysis
)
RecentColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
reset()
(in
Lexer
)
rock_data
(in
schrodinger.application.bioluminate.pml_menus
)
RecentHydrogenColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
reset()
(in
Parser
)
rock_workspace()
(in
schrodinger.application.bioluminate.pml_menus
)
RecentObjectColorSubMenu
(in
schrodinger.application.bioluminate.pml_menus
)
reset()
(in
ANTLRStringStream
)
RockData
(in
schrodinger.application.bioluminate.pml_menus
)
receptor_atom_flags
(in
schrodinger.structutils.interactions
)
reset()
(in
CommonTokenStream
)
rollback()
(in
TokenRewriteStream
)
reciprocal
(in
schrodinger.protein.assignment
)
reset()
(in
CommonTreeNodeStream
)
rollback()
(in
CfgAtom
)
RecognitionException
(in
schrodinger.application.desmond.antlr3.exceptions
)
reset()
(in
RewriteRuleElementStream
)
rollback()
(in
Key
)
recognitionException()
(in
DebugEventListener
)
reset()
(in
TreeParser
)
rolmp2()
(in
schrodinger.application.jaguar.output
)
recognitionException()
(in
DebugEventSocketProxy
)
reset()
(in
Engine
)
rot_vect()
(in
schrodinger.application.lid.lid2d.utils
)
recognizers
(in
schrodinger.application.desmond.antlr3
)
reset()
(in
Queue
)
rotamers
(in
schrodinger.protein
)
RecognizerSharedState
(in
schrodinger.application.desmond.antlr3.recognizers
)
reset()
(in
RetryTimer
)
Rotamers
(in
schrodinger.protein.rotamers
)
recolorPlot()
(in
HomologyRama
)
reset()
(in
_DesmondProt
)
rotamers
(in
Rotamers
)
recombine_solutions()
(in
hbond_cluster
)
reset()
(in
_LigMut
)
rotatable_changeable
(in
ProtAssign
)
recombineInputLigands()
(in
DockingStage
)
reset()
(in
_McproProt
)
rotate
(in
schrodinger.application.lid.lid2d
)
recombineInputLigands()
(in
LigPrepStage
)
reset()
(in
_ProMut
)
rotate_all_bonds_and_save()
(in
schrodinger.application.lid.lid2d.rotate
)
recombineInputLigands()
(in
ConfSearchStage
)
reset()
(in
_ProtItem
)
rotate_all_bonds_and_save_path_sorted()
(in
schrodinger.application.lid.lid2d.rotate
)
recombineInputLigands()
(in
QikPropStage
)
reset()
(in
_RingMut
)
rotate_bond_test_and_return_best()
(in
schrodinger.application.lid.lid2d.rotate
)
recombineInputLigands()
(in
SemiEmpStage
)
reset()
(in
Guide
)
rotate_bonds_in_order_and_save()
(in
schrodinger.application.lid.lid2d.rotate
)
record()
(in
RecordDebugEventListener
)
reset()
(in
SystemBuilderInput
)
rotate_structure()
(in
schrodinger.structutils.transform
)
record()
(in
TraceDebugEventListener
)
reset()
(in
Counter
)
rotateProteinToMembrane()
(in
Membrane_Model
)
record_current_indices()
(in
ProtAssign
)
reset()
(in
DrawDdgPanel
)
rotational_strength_precision
(in
NormalMode
)
record_error()
(in
_Evalor
)
reset()
(in
DrawFepPanel
)
rotVector()
(in
schrodinger.application.lid.lid2d.utils
)
record_error()
(in
_Evalor
)
reset()
(in
DrawLrmPanel
)
round()
(in
WriteInputs
)
RecordDebugEventListener
(in
schrodinger.application.desmond.antlr3.debug
)
reset()
(in
DrawMcPanel
)
row
(in
WidgetTable
)
recover()
(in
BaseRecognizer
)
reset()
(in
DrawMiniPanel
)
RowActionItem
(in
schrodinger.application.bioluminate.bwidgets
)
recover()
(in
Lexer
)
reset()
(in
ModelSystem
)
rowCount()
(in
CriteriaListModel
)
recover_macro()
(in
CfgAtom
)
reset()
(in
DrawSolventPanel
)
rowCount()
(in
DataModel
)
recover_macro()
(in
Key
)
reset()
(in
HuntCache
)
rowCount()
(in
PathModel
)
recoverFromMismatchedSet()
(in
BaseRecognizer
)
reset()
(in
StructuralInteractionFingerprintGenerator
)
rowCount()
(in
ResiduesModel
)
recoverFromMismatchedToken()
(in
BaseRecognizer
)
reset_protein()
(in
_ChopCap
)
rowCount()
(in
StrucListModel
)
rectangle_overlaps_sphere()
(in
schrodinger.application.lid.lid2d.utils
)
reset_protein()
(in
_Neut
)
rowCount()
(in
AtomGroupModel
)
rectangles_overlap()
(in
schrodinger.application.lid.lid2d.utils
)
reset_sizes_clicked()
(in
SaveFileDialog
)
rowCount()
(in
PosResModel
)
rectArea2D()
(in
schrodinger.application.lid.lid2d.utils
)
reset_tag()
(in
Sea
)
rowCount()
(in
TableModel
)
RED
(in
schrodinger.application.bioluminate.pml_menus
)
reset_workspace_transformations()
(in
schrodinger.maestro.maestro
)
rowCount()
(in
ChooseLigandModel
)
red
(in
schrodinger.application.lid.lid2d.rotate
)
resetApp()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
rowCount()
(in
ChooseLigandModel
)
red
(in
schrodinger.application.lid.ligand_interaction_diagram
)
resetAtomGroupTable()
(in
AtomGroupFrame
)
rowCount()
(in
CriteriaListModel
)
redraw()
(in
ClusterStatisticsPlotDialog
)
resetClicked()
(in
_LigMut
)
rowCount()
(in
PatternModel
)
redraw()
(in
DendrogramPlotDialog
)
resetClicked()
(in
_ProMut
)
rowGetExpanded()
(in
Table
)
redraw()
(in
DistanceMatrixPlotDialog
)
resetClicked()
(in
_RingMut
)
rowGetVisible()
(in
Table
)
redraw()
(in
schrodinger.maestro.maestro
)
resetEnsClass()
(in
EnsembleTab
)
RowIterator
(in
schrodinger.ui.widgettable
)
redraw_request()
(in
schrodinger.maestro.maestro
)
resetfp()
(in
CanvasFingerprintGeneratorGUI
)
rowPos()
(in
_Cell
)
redraw_sphere()
(in
DrawSolventPanel
)
resetFromModel()
(in
AtomGroupFrame
)
rowPos()
(in
_Row
)
reduced_mass_precision
(in
NormalMode
)
resetFromModel()
(in
InteractionTab
)
rowSetExpanded()
(in
Table
)
reduced_set()
(in
Zmat
)
resetFromModel()
(in
MdcMiscTab
)
rowSetVisible()
(in
Table
)
reduceToSingleOperationPerIndex()
(in
TokenRewriteStream
)
resetFromModel()
(in
RestraintsTab
)
rrho()
(in
ComUtil
)
REDUDANT_SIGNATURES
(in
schrodinger.infra.licensing
)
resetFromModel()
(in
_BaseAdvancedDialog
)
rsh_exec
(in
schrodinger.job.remote_command
)
redundancy_tolerance
(in
water_changeable
)
resetGroup()
(in
Preferences
)
rsh_max_retries
(in
schrodinger.job.remote_command
)
ref_keys
(in
SiteMatchLookup
)
resetInputContext()
(in
sketcher
)
rsh_src
(in
schrodinger.job.remote_command
)
refcount
(in
_StructureDeleter
)
resetInputContext()
(in
sketcherGUIMultiColumnToolBar
)
rsh_test()
(in
schrodinger.job.remote_command
)
REFERENCE_FILTERS
(in
SequenceFileDialog
)
resetInputContext()
(in
sketcherView
)
rsh_timeout
(in
schrodinger.job.remote_command
)
referenceFragChanged()
(in
_Pert
)
resetMaxIter()
(in
MinimizationTab
)
RT_COLOR_LABEL_END
(in
schrodinger.application.bioluminate.pml_menus
)
refill_queue()
(in
Queue
)
resetMaxIter()
(in
MinimizerFrame
)
RT_COLOR_LABEL_START
(in
schrodinger.application.bioluminate.pml_menus
)
refinePrime()
(in
Refiner
)
resetMode()
(in
DrawSolventPanel
)
RT_TO_MAESTRO_COLORS
(in
schrodinger.application.bioluminate.pml_menus
)
Refiner
(in
schrodinger.application.bioluminate.protein
)
resetPanel()
(in
_App
)
RULE
(in
DesmondTyper
)
refresh()
(in
_MdcBase
)
resetPanel()
(in
GuiApp
)
RULE
(in
McproTyper
)
refreshFragList()
(in
_Pert
)
resetPanel()
(in
App
)
RULE
(in
WatermapTyper
)
refreshTable()
(in
Project
)
resetPosResTable()
(in
RestraintsTab
)
rulePostProcessing()
(in
DebugTreeAdaptor
)
reg_checking()
(in
schrodinger.application.desmond.cmj
)
resetThermoTemp()
(in
EnsembleTab
)
rulePostProcessing()
(in
BaseTreeAdaptor
)
reg_xcheck()
(in
schrodinger.application.desmond.mdkey
)
residue
(in
Sequence
)
rulePostProcessing()
(in
TreeAdaptor
)
reg_xcheck()
(in
schrodinger.utils.sea
)
residue
(in
Structure
)
RuleReturnScope
(in
schrodinger.application.desmond.antlr3.recognizers
)
regenerate_markers()
(in
schrodinger.maestro.maestro
)
residue
(in
TextualStructure
)
run()
(in
Queue
)
RegionInfo
(in
schrodinger.application.bioluminate.pml_menus
)
residue
(in
_Chain
)
run()
(in
AnalysisJob
)
regularized_structure
(in
Ligand
)
residue
(in
_Molecule
)
run()
(in
FepanaJob
)
Reinitialize
(in
schrodinger.application.bioluminate.pml_menus
)
RESIDUE_CALCULATIONS
(in
PropertyCalculator
)
run()
(in
MetadynamicsAnalysisJob
)
reject()
(in
ValueSelectionDialog
)
residue_indices
(in
Consensus
)
run()
(in
SeaJob
)
rejected()
(in
AddDefinitionDialog
)
residue_is_nonpolar()
(in
schrodinger.application.bioluminate.protein
)
run()
(in
TimeSeriesAnalysisJob
)
relative_to_ligand_scale
(in
schrodinger.application.lid.ligand_interaction_diagram
)
residue_is_polar()
(in
schrodinger.application.bioluminate.protein
)
run()
(in
WaterMapAnaJob
)
RelaxFrame
(in
schrodinger.application.desmond.gui
)
residue_outside_of_image()
(in
schrodinger.application.lid.lid2d.overlap
)
run()
(in
SystemBuilderInput
)
release()
(in
DebugTokenStream
)
residue_overlaps_hbond_or_pipi()
(in
schrodinger.application.lid.lid2d.overlap
)
run()
(in
TestSuite
)
release()
(in
ANTLRStringStream
)
residue_overlaps_ligand_or_label()
(in
schrodinger.application.lid.lid2d.overlap
)
run()
(in
JaguarInput
)
release()
(in
CommonTokenStream
)
RESIDUE_ROTOR_COUNT
(in
schrodinger.application.bioluminate.protein
)
run()
(in
schrodinger.application.lid.ligand_interaction_diagram_test
)
release()
(in
IntStream
)
residues
(in
Consensus
)
run()
(in
schrodinger.application.mopac
)
release()
(in
CommonTreeNodeStream
)
ResiduesDelegate
(in
schrodinger.application.desmond.fep_gui
)
run()
(in
WaterMapInput
)
release()
(in
StageBase
)
ResiduesModel
(in
schrodinger.application.desmond.fep_gui
)
run()
(in
App
)
release()
(in
Concluder
)
residuetools
(in
schrodinger.application.mcpro
)
run()
(in
BaseJob
)
reload
(in
JaguarInput
)
ResidueTools
(in
schrodinger.application.mcpro.residuetools
)
run()
(in
JobDJ
)
reload()
(in
schrodinger.application.lid.ligand_interaction_diagram_gui
)
residueUID()
(in
schrodinger.application.lid.lid2d.schroutils
)
run()
(in
SubprocessJob
)
relpath()
(in
schrodinger.application.desmond.util
)
resize()
(in
Bitset
)
run()
(in
ThreadedJob
)
remainder
(in
schrodinger.protein.assignment
)
resize()
(in
_Column
)
run()
(in
Pipeline
)
REMD
(in
schrodinger.application.desmond.config
)
resize_restr_block()
(in
_AtomGroup
)
run()
(in
Stage
)
remd
(in
schrodinger.application.desmond
)
resize_restr_block()
(in
schrodinger.application.desmond.mdkey
)
run()
(in
schrodinger.trajectory.analyze_trajectories
)
REMD()
(in
DEFAULT_SETTING
)
RESIZE_THRESHOLD
(in
schrodinger.ui.widgettable
)
run()
(in
FrameLoader
)
remediate
(in
schrodinger.protein
)
resize_window()
(in
schrodinger.application.desmond.util
)
run()
(in
RMSDCalculator
)
remediate_ct()
(in
schrodinger.protein.remediate
)
resize_window2()
(in
schrodinger.application.desmond.util
)
run_align()
(in
schrodinger.application.ska
)
remote_command
(in
schrodinger.job
)
resizeCells()
(in
WidgetTable
)
run_bennett()
(in
schrodinger.application.desmond.fepana
)
remote_command()
(in
schrodinger.job.remote_command
)
resizeEvent()
(in
sketcher
)
RUN_JOBS
(in
schrodinger.application.macromodel.paraUtils
)
REMOTE_MMSHARE_EXEC
(in
Startup
)
resizeEvent()
(in
sketcherGUIMultiColumnToolBar
)
run_kwargs
(in
JaguarInput
)
REMOVE
(in
schrodinger.application.mopac
)
resizeEvent()
(in
sketcherView
)
run_propka()
(in
ProtAssign
)
remove()
(in
SearchType
)
ResizeMode
run_ska()
(in
schrodinger.infra._ska
)
remove()
(in
SlidableLine
)
resizeTableColumns()
(in
DBManagePanel
)
runAll()
(in
schrodinger.application.lid.ligand_interaction_diagram_test
)
remove()
(in
JobOutput
)
resnum
(in
Cut
)
runCluFile()
(in
CluUtil
)
remove()
(in
_MdcBase
)
resnum
(in
_Residue
)
runCommand()
(in
AppFramework
)
remove()
(in
FirstSecondaryStructure
)
resnum
(in
_StructureAtom
)
runJobDJ()
(in
Stage
)
remove()
(in
SecondSecondaryStructure
)
RESOLUTION_DEFAULT
(in
schrodinger.graphics3d.arrow
)
RUNNING
(in
JobStatus
)
remove()
(in
Group
)
RESOLUTION_DEFAULT
(in
schrodinger.graphics3d.sphere
)
RUNNING
(in
schrodinger.pipeline.pipeline
)
remove()
(in
LinkedList
)
RESOLUTION_MAX
(in
schrodinger.graphics3d.arrow
)
RunningJobs
(in
schrodinger.job.queue
)
remove()
(in
RunningJobs
)
RESOLUTION_MAX
(in
schrodinger.graphics3d.sphere
)
runpKa()
(in
PropertyCalculator
)
remove()
(in
_Callback
)
RESOLUTION_MIN
(in
schrodinger.graphics3d.arrow
)
runPrimeLoopPrediction()
(in
Refiner
)
remove()
(in
_Column
)
RESOLUTION_MIN
(in
schrodinger.graphics3d.sphere
)
runPrimeMinimization()
(in
Refiner
)
remove()
(in
Preferences
)
resolve_atomsel()
(in
FcnCall
)
runPrimeMultiLoopPrediction()
(in
Refiner
)
remove_changeables_from_hbonders()
(in
ProtAssign
)
resolve_atomsel()
(in
Node
)
runPrimeSidechain()
(in
Refiner
)
remove_dummy_atoms()
(in
Membrane_Model
)
resolve_atomsel()
(in
schrodinger.application.desmond.enhsamp
)
runPrimeSidechainBB()
(in
Refiner
)
remove_dupes()
(in
schrodinger.structutils.smilesfilter
)
respaBondChanged()
(in
IntegrationTab
)
runPrimeSidechainCBeta()
(in
Refiner
)
remove_file()
(in
schrodinger.application.desmond.util
)
restart
(in
JaguarInput
)
runPythonMinimize()
(in
Refiner
)
remove_hypo_if_present()
(in
schrodinger.application.phase.hypothesis
)
restart
(in
JaguarOutput
)
runRefinement()
(in
Refiner
)
REMOVE_LINGER
(in
schrodinger.infra.licensing
)
RESTART
(in
schrodinger.application.macromodel.paraUtils
)
runsLocally()
(in
BaseJob
)
remove_object()
(in
schrodinger.maestro.maestro
)
RESTART
(in
schrodinger.utils.cmdline
)
runsLocally()
(in
JobControlJob
)
remove_option()
(in
SingleDashOptionParser
)
restart()
(in
RetryTimer
)
runXCluFile()
(in
CluUtil
)
remove_plugin()
(in
schrodinger.application.desmond.config
)
Restart()
(in
schrodinger.pipeline.pipeline
)
rxn_coord_precision
(in
JaguarResults
)
remove_plugin()
(in
schrodinger.application.desmond.mdkey
)
restart()
(in
StageJob
)
remove_Reorg_zroff_GS_contribution()
(in
ReorgFitting
)
Restart()
(in
schrodinger.pipeline.stage
)
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Suite 2012 Schrodinger Python API
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