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Identifier Index

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W

w_gb (in schrodinger.application.lid.lid2d.draw)	windowQueryWithoutEdges() (in IntervalTree)	write_file() (in Rama)
WAIT (in schrodinger.utils.cmdline)	WINDOWS (in schrodinger.utils.preferences)	write_glide_input_file() (in DockingStage)
wait() (in Job)	within_group1_global_max (in TwoGroupFingerprintAnalyzer)	write_hst_file() (in schrodinger.application.macromodel.utils)
waitForFiles() (in Stage)	within_group1_global_min (in TwoGroupFingerprintAnalyzer)	write_log() (in schrodinger.trajectory.analyze_trajectories)
waitForFileStatus() (in Stage)	within_group2_global_max (in TwoGroupFingerprintAnalyzer)	write_msj() (in schrodinger.application.desmond.cmj)
WAITING (in JobStatus)	within_group2_global_min (in TwoGroupFingerprintAnalyzer)	write_n_ct() (in schrodinger.application.desmond.util)
WAITING (in schrodinger.job.queue)	within_three_bonds() (in steric_clash_data_set)	write_parameter_file() (in Membrane_Model)
WAITING (in schrodinger.pipeline.pipeline)	withinTB_changed() (in App)	write_sba_file() (in schrodinger.application.desmond.simulation_block_data)
waiting_jobs (in JobDJ)	WOFF (in schrodinger.application.glide.xp6classes)	write_sea2msj() (in schrodinger.application.desmond.cmj)
WalkerMain (in schrodinger.application.desmond.antlr3.main)	work_val() (in CfgAtom)	write_sequences_to_fasta() (in schrodinger.application.prepwizard)
WARNING (in schrodinger.utils.log)	WORKSPACE (in SimplifiedSequenceViewer)	write_structure() (in Membrane_Model)
warning() (in PropFilterDialog)	Workspace (in schrodinger.application.desmond.maestro)	write_to_stdout() (in Report)
warning() (in Report2D)	WORKSPACE (in JobInputFrame)	write_to_string() (in Cms)
warning() (in schrodinger.maestro.maestro)	WORKSPACE (in JobInputFrame)	write_warning() (in schrodinger.trajectory.analyze_trajectories)
warning() (in Stage)	WORKSPACE (in schrodinger.ui.qt.appframework)	write_watermap() (in WaterMapAnaJob)
warning() (in AppFramework)	workspace_bounding_box_function_add() (in schrodinger.maestro.maestro)	writeAlignData() (in BindingSiteAligner)
warning() (in JobInputFrame)	workspace_bounding_box_function_remove() (in schrodinger.maestro.maestro)	writeBestStereos() (in PostLigPrepStage)
warning() (in StartDialog)	WORKSPACE_CHANGED_APPEND (in schrodinger.maestro.maestro)	writeCluFile() (in CluUtil)
warning() (in WriteDialog)	WORKSPACE_CHANGED_COLOR (in schrodinger.maestro.maestro)	writeCmdFile() (in WriteInputs)
warning() (in AddDefinitionDialog)	WORKSPACE_CHANGED_CONNECTIVITY (in schrodinger.maestro.maestro)	writeCmjFile() (in _App)
warning() (in LigfilterFrame)	WORKSPACE_CHANGED_COORDINATES (in schrodinger.maestro.maestro)	writeCms() (in CmsStructure)
warning() (in AppFramework)	WORKSPACE_CHANGED_EVERYTHING (in schrodinger.maestro.maestro)	writeCms() (in DesmondSimulation)
warning() (in JobInputFrame)	workspace_changed_function_add() (in schrodinger.maestro.maestro)	writeCNS() (in Grid3D)
warning() (in StartDialog)	workspace_changed_function_remove() (in schrodinger.maestro.maestro)	writeComFile() (in _MacroModel)
warning() (in WriteDialog)	WORKSPACE_CHANGED_GEOMETRY (in schrodinger.maestro.maestro)	writeComFile() (in ComUtil)
warning() (in schrodinger.utils.openpdf)	WORKSPACE_CHANGED_PROPERTIES (in schrodinger.maestro.maestro)	writeCommand() (in GuiApp)
warning_dialog() (in schrodinger.application.desmond.gui)	WORKSPACE_CHANGED_REPRESENTATION (in schrodinger.maestro.maestro)	writeCommand() (in ConformerRmsd)
watch_sel() (in Table)	WORKSPACE_CHANGED_SELECTION (in schrodinger.maestro.maestro)	writeCommand() (in ConformerRmsdX)
WATER (in schrodinger.application.bioluminate.actions.icons)	WORKSPACE_CHANGED_UNKNOWN (in schrodinger.maestro.maestro)	writeCommandScript() (in liaison)
WATER (in schrodinger.application.bioluminate.pml_menus)	WORKSPACE_CHANGED_VISIBILITY (in schrodinger.maestro.maestro)	writeComplex() (in GenerateCovalentComplexesStage)
water_action (in ConsensusToolBar)	workspace_draw_function_add() (in schrodinger.maestro.maestro)	writeCsv() (in ActiveDecoyFingerprintAnalyzer)
water_c (in schrodinger.application.lid.lid2d.draw)	workspace_draw_function_remove() (in schrodinger.maestro.maestro)	writeCSVFile() (in StructuralInteractionFingerprintGenerator)
water_c_bw (in schrodinger.application.lid.lid2d.draw)	workspace_get() (in FakeMaestro)	WriteDialog (in schrodinger.ui.appframework)
water_changeable (in ProtAssign)	workspace_get() (in FakeMaestro)	WriteDialog (in schrodinger.ui.qt.appframework)
WaterMap	workspace_get() (in schrodinger.maestro.maestro)	writeDice() (in GlideJob)
watermap (in schrodinger.application)	workspace_get_coordinate_center() (in schrodinger.maestro.maestro)	writeDirectory() (in liaison)
WATERMAP (in schrodinger.infra.mm)	workspace_get_size_and_scale() (in schrodinger.maestro.maestro)	writeDockingStage() (in VSWWriter)
WATERMAP (in schrodinger.utils.preferences)	workspace_get_translation() (in schrodinger.maestro.maestro)	writeDstFile() (in CluUtil)
WATERMAP_CMD (in WaterMap)	workspace_get_view_matrix() (in schrodinger.maestro.maestro)	writeFES() (in MetaDynamicsAnalysis)
WATERMAP_DEVELOPMENT (in schrodinger.infra.licensing)	workspace_get_view_matrix_inverse() (in schrodinger.maestro.maestro)	writeFile() (in Job)
WATERMAP_EXEC_DIR (in CONST)	workspace_get_view_matrix_inverse_no_center() (in schrodinger.maestro.maestro)	writeFPFile() (in StructuralInteractionFingerprintGenerator)
watermap_inp (in schrodinger.application.watermap)	workspace_get_viewing_volume() (in schrodinger.maestro.maestro)	writeFrameWater() (in WaterMapAnaJob)
WATERMAP_MAIN (in schrodinger.infra.licensing)	workspace_set() (in schrodinger.maestro.maestro)	writeGenConfsStage() (in VSWWriter)
watermap_scoring (in schrodinger.application.watermap)	workspace_set_view_matrix_4x4() (in schrodinger.application.lid.lid2d.utils)	writeGrd() (in JaguarOutput)
WATERMAP_VERSION() (in CONST)	workspaceChanged() (in ReportFrame)	writeGridData() (in WaterMapAnaJob)
WaterMapAnaJob	workspaceChanged() (in MultiReportWithChart)	writeHeader() (in WriteInputs)
WaterMapCluster	workspaceChanged() (in _App)	writeHSWater() (in WaterMapAnaJob)
WaterMapInput (in schrodinger.application.watermap.watermap_inp)	WRAP (in schrodinger.protein.assignment)	writeInput() (in liaison)
WaterMapPostAnalysis	wrap() (in schrodinger.application.desmond.periodicfix)	writeInputFile() (in InputConfig)
WatermapTyper (in schrodinger.application.desmond.systype)	write() (in CanvasFingerprintGenerator)	writeInputFile() (in VSWWriter)
wb (in schrodinger.application.lid.ligand_interaction_diagram_gui)	write() (in DebugEventSocketProxy)	writeinputs (in schrodinger.application.mcpro)
WCUT (in schrodinger.application.glide.xp6classes)	write() (in _Main)	WriteInputs (in schrodinger.application.mcpro.writeinputs)
wdaystr (in schrodinger.job.timestamp)	write() (in Cms)	writeJob() (in _App)
WEB (in schrodinger.protein.getpdb)	write() (in FFIOStructure)	writeLigand() (in Complex)
wheelEvent() (in sketcher)	write() (in GaussianFilter)	writeln() (in _Main)
wheelEvent() (in sketcherGUIMultiColumnToolBar)	write() (in Entry)	writeMaeFile() (in _App)
wheelEvent() (in sketcherView)	write() (in EntryGroup)	writeMaefile() (in JaguarInput)
WHICH (in schrodinger.utils.cmdline)	write() (in Structure)	writeMatrixData() (in BindingSiteAligner)
which() (in schrodinger.job.remote_command)	write() (in Reporter)	writeParBlock() (in WriteInputs)
whichSideIsPoint() (in schrodinger.application.lid.lid2d.utils)	write() (in SystemBuilderInput)	writeParBlocks() (in WriteInputs)
WHITE (in schrodinger.application.bioluminate.pml_menus)	write() (in PoseLibrary)	writePreFilterStage() (in VSWWriter)
white_c (in schrodinger.application.lid.ligand_interaction_diagram_gui)	write() (in _XpDesBlock)	writePrepareStages() (in VSWWriter)
white_color (in schrodinger.application.lid.lid2d.draw)	write() (in JaguarOutput)	writePressed() (in WriteDialog)
whiteColorMap (in schrodinger.application.lid.lid2d.render)	write() (in CtObj)	writePrimeInput() (in Refiner)
whiteXPen (in schrodinger.application.lid.lid2d.draw)	write() (in MopacCalculation)	writePTEntries() (in JobInputFrame)
WHY (in schrodinger.utils.cmdline)	write() (in Hypothesis)	writePv() (in Complex)
widget (in schrodinger.ui)	write() (in Prime)	Writer (in schrodinger.pipeline.input)
WIDGET_LOOK (in Table)	write() (in QSiteInput)	writeReceptor() (in Complex)
widgettable (in schrodinger.ui)	write() (in WaterMapInput)	writeRequiredFiles() (in WriteInputs)
WidgetTable (in schrodinger.ui.widgettable)	write() (in Writer)	writeRoot() (in DrugLikeSplitStage)
WILDCARD_PATTERN (in Atom)	write() (in PDBWriter)	writeSamplingBlocks() (in WriteInputs)
WildcardTreePattern (in schrodinger.application.desmond.antlr3.treewizard)	write() (in SmilesStructure)	writeSbcFile() (in ComUtil)
WILL_HANDLE_JOB (in schrodinger.maestro.maestro)	write() (in Structure)	writeSbcFile() (in SbcUtil)
win (in schrodinger.application.desmond.guide)	write() (in TextualStructure)	writeSchemeFile() (in ColorScheme)
win (in schrodinger.application.mcpro.guide)	write() (in StructureFileSorter)	writeSelectedEntries() (in JobInputFrame)
window (in schrodinger.application.mcpro.ddg)	write_checkpoint() (in Engine)	writeSelectedEntries() (in JobInputFrame)
window (in schrodinger.application.mcpro.fep)	write_cms() (in schrodinger.application.desmond.ffiostructure)	writeSIFFile() (in ConfSearchStage)
window (in schrodinger.application.mcpro.lrm)	write_cms() (in schrodinger.trajectory.cmsstructure)	writeSIFFile() (in SampleRingsStage)
window (in schrodinger.application.mcpro.mc)	write_cms_to_string() (in schrodinger.application.desmond.ffiostructure)	writeSimplified() (in GlideJob)
window (in schrodinger.application.mcpro.mini)	write_ct() (in schrodinger.structure)	writeSimplified() (in _MacroModel)
window (in schrodinger.application.mcpro.solvent)	write_ct_as_text() (in schrodinger.structure)	writeStructures() (in ConformerRmsd)
window_length (in StructAlign)	write_ct_mol2() (in schrodinger.structure)	writeStructures() (in ConformerRmsdX)
WINDOW_TITLE (in SequenceDockWidget)	write_ct_pdb() (in schrodinger.structure)	writeStructures() (in BindingSiteAligner)
WINDOW_TITLE (in ViewerWindow)	write_ct_pdb_psp() (in proteinHandler)	writeTopNFromBlock() (in StructureFileSorter)
windowActivationChange() (in sketcher)	write_ct_sd() (in schrodinger.structure)	writeTopPoses() (in PoseLibrary)
windowActivationChange() (in sketcherGUIMultiColumnToolBar)	write_ct_smiles() (in schrodinger.structure)	writeToString() (in Structure)
windowActivationChange() (in sketcherView)	write_ct_to_sd_string() (in schrodinger.structure)	writeValidPoses() (in PoseLibrary)
windowQuery() (in FirstSecondaryStructure)	write_ct_to_string() (in schrodinger.structure)	WS (in schrodinger.application.desmond.enhanced_sampling.mexpLexer)
windowQuery() (in IntervalTree)	WRITE_DICE (in schrodinger.pipeline.stages.glide)	WS (in schrodinger.application.desmond.enhanced_sampling.mexpParser)
windowQuery() (in SecondSecondaryStructure)	write_entries_from_project() (in schrodinger.maestro.maestro)	wspace (in schrodinger.application.inputconfig)
windowQueryDetailed() (in IntervalTree)	write_error() (in schrodinger.trajectory.analyze_trajectories)