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Suite 2012 Schrodinger Python API
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_
]
_
__abs__()
(in
Measurement
)
__init__()
(in
Text
)
_get_entry_hypo_data_file()
(in
schrodinger.application.phase.hypothesis
)
__add__()
(in
Measurement
)
__init__()
(in
Tk
)
_get_fake_jlaunch_cmd_for_write()
(in
_App
)
__add__()
(in
List
)
__init__()
(in
Toplevel
)
_get_file()
(in
Startup
)
__attach_msj()
(in
schrodinger.application.desmond.config
)
__init__()
(in
schroWidget
)
_get_geometry()
(in
Table
)
__calc_bonded_lambda()
(in
schrodinger.application.desmond.config
)
__init__()
(in
ButtonCell
)
_get_geometry_defaults()
(in
schroPmwWrapper
)
__calc_charge_lambda()
(in
schrodinger.application.desmond.config
)
__init__()
(in
ButtonColumn
)
_get_gluepoints_impl()
(in
schrodinger.application.desmond.cms
)
__calc_vdw_lambda()
(in
schrodinger.application.desmond.config
)
__init__()
(in
CanvasCell
)
_get_gluepoints_impl_old()
(in
schrodinger.application.desmond.cms
)
__call__()
(in
_Bool
)
__init__()
(in
CanvasColumn
)
_get_handlers()
(in
schrodinger.infra.mmim
)
__call__()
(in
_Evalor
)
__init__()
(in
CellIterator
)
_get_home()
(in
schrodinger.application.desmond.mplchart
)
__call__()
(in
_Index
)
__init__()
(in
CheckbuttonCell
)
_get_host()
(in
Queue
)
__call__()
(in
EntryRestrictor
)
__init__()
(in
CheckbuttonColumn
)
_get_host()
(in
schrodinger.job.jobcontrol
)
__call__()
(in
InfAutofill
)
__init__()
(in
ColumnIterator
)
_get_hosts()
(in
schrodinger.application.desmond.cwidget
)
__call__()
(in
_CCodeProfiler
)
__init__()
(in
EntryFieldCell
)
_get_index()
(in
Map
)
__call__()
(in
_Wrapper
)
__init__()
(in
EntryFieldColumn
)
_get_jlaunch_cmd()
(in
_App
)
__call__()
(in
_MultiJobFinalizer
)
__init__()
(in
LabelCell
)
_get_job()
(in
schrodinger.pipeline.pipeline
)
__call__()
(in
SmilesErrorHandler
)
__init__()
(in
LabelColumn
)
_get_jobname_and_dir()
(in
StageBase
)
__call__()
(in
_PBCMeasureMananger
)
__init__()
(in
OptionMenuCell
)
_get_jobs_to_run()
(in
schrodinger.application.macromodel.paraUtils
)
__call__()
(in
_RamachandranCallback
)
__init__()
(in
OptionMenuColumn
)
_get_key_data()
(in
schrodinger.infra.mmim
)
__call__()
(in
_Evalor
)
__init__()
(in
RadiobuttonCell
)
_get_key_index()
(in
Map
)
__canonicalize_coulomb_method()
(in
schrodinger.application.desmond.config
)
__init__()
(in
RadiobuttonColumn
)
_get_lowest_residue()
(in
schrodinger.protein.captermini
)
__canonicalize_ensemble()
(in
schrodinger.application.desmond.config
)
__init__()
(in
RowIterator
)
_get_macro_dict()
(in
StageBase
)
__canonicalize_fep()
(in
schrodinger.application.desmond.config
)
__init__()
(in
WidgetTable
)
_get_maestro_type()
(in
schrodinger.application.moldescriptors
)
__canonicalize_pressure()
(in
schrodinger.application.desmond.config
)
__init__()
(in
_Cell
)
_get_mm_prefix()
(in
schrodinger.infra.mm
)
__canonicalize_temperature()
(in
schrodinger.application.desmond.config
)
__init__()
(in
_Column
)
_get_mmsym_map()
(in
schrodinger.structutils.rmsd
)
__CHECK_CFG_DEBUG
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
_Row
)
_get_model()
(in
Simulate
)
__CHECK_SEA_DEBUG
(in
schrodinger.utils.sea
)
__init__()
(in
_ScrolledDouble
)
_get_mopac_keyword()
(in
schrodinger.application.moldescriptors
)
__clean_cfg()
(in
schrodinger.application.desmond.config
)
__init__()
(in
SingleDashOption
)
_get_mopac_results()
(in
schrodinger.application.moldescriptors
)
__cmp__()
(in
PairDict
)
__init__()
(in
SingleDashOptionParser
)
_get_msj()
(in
GuiApp
)
__cmp__()
(in
Counter
)
__init__()
(in
AslCriterion
)
_get_name_method
(in
_FEPIOOtherBlock
)
__cmp__()
(in
BondCharge
)
__init__()
(in
Criterion
)
_get_name_method
(in
_FFIOOtherBlock
)
__cmp__()
(in
Dipole
)
__init__()
(in
CriterionParser
)
_get_name_method()
(in
_OtherBlock
)
__cmp__()
(in
Orbital
)
__init__()
(in
Definition
)
_get_ncpu()
(in
Startup
)
__cmp__()
(in
ThermoProp
)
__init__()
(in
DefinitionParser
)
_get_num_constraint()
(in
schrodinger.application.desmond.predict_remd_temp
)
__cmp__()
(in
_Attribute
)
__init__()
(in
PredefinedCriterion
)
_get_num_nonwateratom()
(in
schrodinger.application.desmond.predict_remd_temp
)
__cmp__()
(in
BaseJob
)
__init__()
(in
PropertyCriterion
)
_get_num_wateratom()
(in
schrodinger.application.desmond.predict_remd_temp
)
__cmp__()
(in
Ligand
)
__init__()
(in
SmartsCriterion
)
_get_option()
(in
SingleDashOptionParser
)
__CONFIG_VALIDATION
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
_MySplit
)
_get_param_dist()
(in
ReorgFitting
)
__contains__()
(in
PairDict
)
__init__()
(in
ModuleProxy
)
_get_parent()
(in
FepVrun
)
__contains__()
(in
mmlist
)
__init__()
(in
Preferences
)
_get_pathway_helper()
(in
schrodinger.application.desmond.fepana
)
__contains__()
(in
Map
)
__init__()
(in
Atom
)
_get_percent_ss_type()
(in
schrodinger.utils.ligfilter
)
__CONVERTIBLE_TO
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
Key
)
_get_principal_quantum_number()
(in
schrodinger.application.moldescriptors
)
__CONVERTIBLE_TO
(in
schrodinger.utils.sea
)
__init__()
(in
List
)
_get_prob_profile()
(in
Analysis
)
__copy__()
(in
Cms
)
__init__()
(in
Map
)
_get_qikprop_cmd()
(in
schrodinger.application.moldescriptors
)
__copy__()
(in
FFIOStructure
)
__init__()
(in
Sea
)
_get_reader()
(in
schrodinger.pipeline.stages.filtering
)
__copy__()
(in
Reporter
)
__init__()
(in
_Evalor
)
_get_reader()
(in
schrodinger.pipeline.stages.gencodes
)
__copy__()
(in
JaguarInput
)
__init__()
(in
IncrementalTimer
)
_get_reader()
(in
schrodinger.pipeline.stages.glide
)
__copy__()
(in
Zmat
)
__init__()
(in
ProxyHandler
)
_get_reader()
(in
schrodinger.pipeline.stages.ligprep
)
__copy__()
(in
Initializer
)
__init__()
(in
ProxyPasswordManager
)
_get_reader()
(in
schrodinger.pipeline.stages.macromodel
)
__copy__()
(in
Structure
)
__init__()
(in
ProxyPasswordManagerQt
)
_get_reader()
(in
schrodinger.pipeline.stages.pull
)
__copy__()
(in
CmsStructure
)
__init__()
(in
ProxyTunnelError
)
_get_reader()
(in
schrodinger.pipeline.stages.qikprop
)
__copy__()
(in
_DesmondFrame
)
__init__()
(in
schrodinger.utils.urllib
)
_get_requestname()
(in
TimeSeriesAnalysisJob
)
__copy__()
(in
FFStructure
)
__int__()
(in
_FEPIOSubBlock
)
_get_salt_list()
(in
schrodinger.structutils.smiles
)
__cvs_version__
(in
schrodinger.application.jaguar.input
)
__int__()
(in
_FFIOSubBlock
)
_get_scientific_matrix()
(in
schrodinger.application.moldescriptors
)
__cvs_version__
(in
schrodinger.application.jaguar.output
)
__int__()
(in
Measurement
)
_get_temp_file_name()
(in
schrodinger.structutils.sort
)
__cvs_version__
(in
schrodinger.application.jaguar.scan
)
__int__()
(in
Counter
)
_get_time_helper()
(in
Job
)
__debug_str_buf
(in
schrodinger.application.desmond.mdkey
)
__int__()
(in
MmObject
)
_get_title()
(in
Analysis
)
__debug_str_buf
(in
schrodinger.utils.sea
)
__int__()
(in
Table
)
_get_title()
(in
TimeSeriesAnalysisJob
)
__deepcopy__()
(in
Job
)
__int__()
(in
EntryGroup
)
_get_type()
(in
_KeywordProcessor
)
__deepcopy__()
(in
JobOutput
)
__int__()
(in
Project
)
_get_value()
(in
Startup
)
__deepcopy__()
(in
List
)
__int__()
(in
_Rotamer
)
_get_value()
(in
Multisim
)
__deepcopy__()
(in
Initializer
)
__int__()
(in
Structure
)
_get_version()
(in
schrodinger.application.desmond.envir
)
__deepcopy__()
(in
Atom
)
__int__()
(in
_Molecule
)
_getABC()
(in
CanvasFingerprintSimilarity
)
__deepcopy__()
(in
List
)
__int__()
(in
_StructureAtom
)
_getActiveJobs()
(in
JobDJ
)
__deepcopy__()
(in
Map
)
__int__()
(in
Color
)
_getActiveSampleSize()
(in
Calculator
)
__deepcopy__()
(in
Sea
)
__iter__()
(in
FingerprintFromFileGenerator
)
_getActiveSampleSizeStar()
(in
Calculator
)
__deepcopy__old()
(in
Sea
)
__iter__()
(in
TokenSource
)
_getAi()
(in
_FFAngle
)
__del__()
(in
License
)
__iter__()
(in
CommonTreeNodeStream
)
_getAi()
(in
_FFBond
)
__del__()
(in
CanvasFingerprintCluster
)
__iter__()
(in
JobOutput
)
_getAi()
(in
_FFConstraint
)
__del__()
(in
CanvasFingerprintGenerator
)
__iter__()
(in
CMSReader
)
_getAi()
(in
_FFDihedral
)
__del__()
(in
CMSReader
)
__iter__()
(in
_FEPIOSubBlockContainer
)
_getAi()
(in
_FFExclusion
)
__del__()
(in
FFIOStructure
)
__iter__()
(in
_FFIOSubBlockContainer
)
_getAi()
(in
_FFPair
)
__del__()
(in
TestSuite
)
__iter__()
(in
_OtherBlock
)
_getAi()
(in
_FFRestraint
)
__del__()
(in
JaguarInput
)
__iter__()
(in
_OtherBlockContainer
)
_getAi()
(in
_FFVirtual
)
__del__()
(in
JaguarOutput
)
__iter__()
(in
line_enumerate
)
_getAj()
(in
_FFAngle
)
__del__()
(in
LigandInteractionDiagram
)
__iter__()
(in
Bitset
)
_getAj()
(in
_FFBond
)
__del__()
(in
App
)
__iter__()
(in
MMIMArgList
)
_getAj()
(in
_FFConstraint
)
__del__()
(in
QSiteInput
)
__iter__()
(in
mmlist
)
_getAj()
(in
_FFDihedral
)
__del__()
(in
Group
)
__iter__()
(in
Table
)
_getAj()
(in
_FFExclusion
)
__del__()
(in
Primitive
)
__iter__()
(in
LinkedList
)
_getAj()
(in
_FFPair
)
__del__()
(in
License
)
__iter__()
(in
BackwardsReader
)
_getAj()
(in
_FFVirtual
)
__del__()
(in
ErrorHandler
)
__iter__()
(in
EmptyIterator
)
_getAk()
(in
_FFAngle
)
__del__()
(in
Initializer
)
__iter__()
(in
Project
)
_getAk()
(in
_FFConstraint
)
__del__()
(in
MmObject
)
__iter__()
(in
_AllRowsIterator
)
_getAk()
(in
_FFDihedral
)
__del__()
(in
_Backend
)
__iter__()
(in
_EntryGroupIterator
)
_getAk()
(in
_FFVirtual
)
__del__()
(in
_JobResourceHolder
)
__iter__()
(in
_EntrySurfaceIterator
)
_getAl()
(in
_FFConstraint
)
__del__()
(in
MaestroReader
)
__iter__()
(in
_IncludedRowsIterator
)
_getAl()
(in
_FFDihedral
)
__del__()
(in
MaestroTextReader
)
__iter__()
(in
_SelectedRowsIterator
)
_getAl()
(in
_FFVirtual
)
__del__()
(in
MaestroWriter
)
__iter__()
(in
AddNeighborGroups
)
_getAllInteractionEnergyComponents()
(in
Minimizer
)
__del__()
(in
Mol2Reader
)
__iter__()
(in
GroupByConnectivity
)
_getAllJobs()
(in
JobDJ
)
__del__()
(in
Mol2Writer
)
__iter__()
(in
_RotamerIterator
)
_getAllRowsIterator()
(in
EntryGroup
)
__del__()
(in
PDBReader
)
__iter__()
(in
MaestroReader
)
_getAllRowsIterator()
(in
Project
)
__del__()
(in
SDReader
)
__iter__()
(in
MaestroTextReader
)
_getAltXYZ()
(in
_StructureAtom
)
__del__()
(in
SDWriter
)
__iter__()
(in
Mol2Reader
)
_getAm()
(in
_FFConstraint
)
__del__()
(in
SmilesCsvReader
)
__iter__()
(in
PDBReader
)
_getAm()
(in
_FFVirtual
)
__del__()
(in
SmilesCsvWriter
)
__iter__()
(in
SDReader
)
_getAn()
(in
_FFVirtual
)
__del__()
(in
SmilesReader
)
__iter__()
(in
SmilesCsvReader
)
_getAncestor()
(in
TreeParser
)
__del__()
(in
SmilesWriter
)
__iter__()
(in
SmilesReader
)
_getAndApplyKeyword()
(in
GlideJob
)
__del__()
(in
_StructureDeleter
)
__iter__()
(in
StructureReader
)
_getAtomBondContainer()
(in
_StructureAtom
)
__del__()
(in
Minimizer
)
__iter__()
(in
_AtomBondContainer
)
_getAtomChain()
(in
_StructureAtom
)
__del__()
(in
FFStructure
)
__iter__()
(in
_AtomIterator
)
_getAtomChirality()
(in
_StructureAtom
)
__del__()
(in
AppFramework
)
__iter__()
(in
_ResidueIterator
)
_getAtomColor()
(in
_StructureAtom
)
__del__()
(in
Preferences
)
__iter__()
(in
_RingEdgeIterator
)
_getAtomElement()
(in
_StructureAtom
)
__delitem__()
(in
PairDict
)
__iter__()
(in
_StructureAtomContainer
)
_getAtomEntryID()
(in
_StructureAtom
)
__delitem__()
(in
_FEPIOSubBlockContainer
)
__iter__()
(in
_StructureBondContainer
)
_getAtomFormalCharge()
(in
_StructureAtom
)
__delitem__()
(in
_FFIOSubBlockContainer
)
__iter__()
(in
_StructureChainIterator
)
_getAtomicNumber()
(in
_StructureAtom
)
__delitem__()
(in
_GenDict
)
__iter__()
(in
_StructureMoleculeIterator
)
_getAtomicWeight()
(in
_StructureAtom
)
__delitem__()
(in
_MopacDict
)
__iter__()
(in
_StructureRingIterator
)
_getAtomIterator()
(in
Sequence
)
__delitem__()
(in
MMIMDict
)
__iter__()
(in
ColorScheme
)
_getAtomIterator()
(in
_Chain
)
__delitem__()
(in
mmlist
)
__iter__()
(in
StructuralInteractionFingerprintGenerator
)
_getAtomIterator()
(in
_Molecule
)
__delitem__()
(in
ProjectRow
)
__iter__()
(in
MultiFileReader
)
_getAtomIterator()
(in
_Residue
)
__delitem__()
(in
_AtomBondContainer
)
__iter__()
(in
_AtomSelection
)
_getAtomIterator()
(in
_Ring
)
__delitem__()
(in
_StructureAtomContainer
)
__iter__()
(in
_FFAngleIterator
)
_getAtomLabelColor()
(in
_StructureAtom
)
__delitem__()
(in
_StructureAtomProperty
)
__iter__()
(in
_FFBondIterator
)
_getAtomLabelFormat()
(in
_StructureAtom
)
__delitem__()
(in
_StructureBondProperty
)
__iter__()
(in
_FFConstraintIterator
)
_getAtomLabelUserText()
(in
_StructureAtom
)
__delitem__()
(in
_StructureChainIterator
)
__iter__()
(in
_FFDihedralIterator
)
_getAtomMoleculeNumber()
(in
_StructureAtom
)
__delitem__()
(in
_StructureMoleculeIterator
)
__iter__()
(in
_FFExclusionIterator
)
_getAtomName()
(in
_StructureAtom
)
__delitem__()
(in
_StructureProperty
)
__iter__()
(in
_FFPairIterator
)
_getAtomNameWarning()
(in
_StructureAtom
)
__delitem__()
(in
RowIterator
)
__iter__()
(in
_FFPseudoIterator
)
_getAtomNumberByEntry()
(in
_StructureAtom
)
__delitem__()
(in
Map
)
__iter__()
(in
_FFRestraintIterator
)
_getAtomNumberByMolecule()
(in
_StructureAtom
)
__deref__()
(in
_FepFrame
)
__iter__()
(in
_FFSiteIterator
)
_getAtomPartialCharge()
(in
_StructureAtom
)
__div__()
(in
Measurement
)
__iter__()
(in
_FFVdwtypeIterator
)
_getAtomProperty()
(in
_StructureAtom
)
__doc__
(in
schrodinger.antibody_db_manage_gui
)
__iter__()
(in
_FFVirtualIterator
)
_getAtoms()
(in
Dihedral
)
__doc__
(in
schrodinger.application.bioluminate.protein_report_widget
)
__iter__()
(in
CellIterator
)
_getAtomSecondaryStructure()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.bioluminate.protein_structure_quality
)
__iter__()
(in
ColumnIterator
)
_getAtomSolvationCharge()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.canvas.cluster
)
__iter__()
(in
RowIterator
)
_getAtomStyle()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.canvas.clustergui
)
__iter__()
(in
WidgetTable
)
_getAtomTemperatureFactor()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.canvas.fingerprint
)
__iter__()
(in
Map
)
_getAtomTotal()
(in
Structure
)
__doc__
(in
schrodinger.application.canvas.fingerprintgui
)
__le__()
(in
CaseInsensitiveString
)
_getAtomTotal()
(in
FFStructure
)
__doc__
(in
schrodinger.application.canvas.similarity
)
__len__()
(in
FingerprintFromFileGenerator
)
_getAtomType()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.canvas.similaritygui
)
__len__()
(in
JobOutput
)
_getAtomTypeName()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.desmond.ffiostructure
)
__len__()
(in
PairDict
)
_getAtomVisible()
(in
_StructureAtom
)
__doc__
(in
schrodinger.application.desmond.gui
)
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schrodinger.application.desmond.cms
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schrodinger.application.desmond.config
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schrodinger.application.desmond.cwidget
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schrodinger.application.desmond.destro
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schrodinger.application.desmond.energygroup
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schrodinger.application.desmond.enhanced_sampling.FcnTypes
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FFStructure
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StructuralInteractionFingerprintGenerator
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FFStructure
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_AtomSelection
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schrodinger.application.desmond.enhanced_sampling.mexpLexer
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schrodinger.application.desmond.enhanced_sampling.mexpParser
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schrodinger.application.desmond.enhsamp
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schrodinger.application.desmond.envir
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schrodinger.application.desmond.fep_gui
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_FFConstraintIterator
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ConformerRmsd
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_FFConstraintProperty
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schrodinger.application.desmond.ffiostructure
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ConformerRmsdX
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_FFDihedralIterator
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schrodinger.application.desmond.framesettools
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ConformerRmsd
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_FFDihedralProperty
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schrodinger.application.desmond.gaussian_filter
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ConformerRmsdX
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_FFExclusionIterator
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schrodinger.application.desmond.gchart
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Sequence
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_FFExclusionProperty
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schrodinger.application.desmond.generictrajectory
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_Residue
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_FFPairIterator
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schrodinger.application.desmond.gui
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_StructureAtom
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_FFPairProperty
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schrodinger.application.desmond.guide
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JaguarInput
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_FFPseudoIterator
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schrodinger.application.desmond.icon
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JaguarOutput
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_FFPseudoProperty
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schrodinger.application.desmond.maestro
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_Ring
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_FFRestraintIterator
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schrodinger.application.desmond.mdkey
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Rotamers
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_FFRestraintProperty
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schrodinger.application.desmond.measurement
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WidgetTable
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_FFSiteIterator
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schrodinger.application.desmond.meta
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BaseRecognizer
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_FFSiteProperty
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schrodinger.application.desmond.mplchart
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SbcUtil
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_FFVdwtypeIterator
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schrodinger.application.desmond.multisimstartup
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Calculator
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_FFVdwtypeProperty
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schrodinger.application.desmond.periodicfix
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_Residue
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_FFVirtualIterator
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schrodinger.application.desmond.picklejar
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EntryGroup
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_FFVirtualProperty
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schrodinger.application.desmond.predict_remd_temp
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Project
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CellIterator
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schrodinger.application.desmond.remd
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Project
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ColumnIterator
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schrodinger.application.desmond.repair_cms
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_FFSite
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RowIterator
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schrodinger.application.desmond.simulation_block_data
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SmilesStructure
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Map
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schrodinger.application.desmond.simulation_block_test
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_FEPIO
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List
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schrodinger.application.desmond.stage
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BaseJob
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List
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schrodinger.application.desmond.struc
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Job
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Job
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schrodinger.application.desmond.system_builder_inp
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JobOutput
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schrodinger.application.desmond.system_builder_util
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StageBase
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schrodinger.application.desmond.systype
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AnalysisJob
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schrodinger.application.desmond.table
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Extern
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schrodinger.application.desmond.util
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FepanaJob
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schrodinger.application.glide
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MetadynamicsAnalysisJob
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schrodinger.application.glide.ensemble_selection
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_ProMut
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Task
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schrodinger.application.glide.glide
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_Backend
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ProjectRow
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JobControlJob
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TextualStructure
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LinkedList
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schrodinger.application.glide.newxp_reorg_fit
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TextualStructure
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SubprocessJob
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TextualStructure
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ThreadedJob
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Structure
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Pipeline
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schrodinger.application.glide.xpdes
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Stage
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schrodinger.application.inputconfig
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Sea
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schrodinger.application.jaguar
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schrodinger.application.desmond.guide
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schrodinger.application.jaguar.constants
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schrodinger.application.jaguar.input
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schrodinger.application.desmond.util
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schrodinger.application.jaguar.mmjag
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Hypothesis
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TreePatternLexer
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ProjectRow
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ActiveDecoyFingerprintAnalyzer
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FingerprintFromFileGenerator
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CmsStructure
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Plotter
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FFStructure
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FFStructure
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ColumnSelectDialog
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schrodinger.application.lid.lid_savedialog_ui
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StructAlign
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DBManagePanel
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Editable
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EditableDelegate
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EditableModel
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JobDJ
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EditableProxyModel
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SearchType
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MaestroSphere
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Factory
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SAction
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ActiveDatabaseDialog
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ActiveDatabaseTable
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FrameworkTemplate
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FrameworkTemplate
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ImportWidget
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LoadingIcon
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schrodinger.application.mcpro.read_output
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NumericLineEdit
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QuickHelpButton
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RowActionItem
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schrodinger.application.mcpro.zmat
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SequenceFileDialog
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schrodinger.application.medchem
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License
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schrodinger.application.medchem.property
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ActionMenu
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schrodinger.application.moldescriptors
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AroundExpandSubMenu
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schrodinger.application.mopac
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schrodinger.application.desmond.icon
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AsMenu
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schrodinger.application.phase
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ColorBySubstructure
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Arrow
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CompleteSubMenu
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Box
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PolyhedronCore
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HideHydrogenSubMenu
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schrodinger.application.vsw.vswinput
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FFIOStructure
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IncludeSubMenu
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JobControlJob
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InvertCompleteSelection
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schrodinger.application.watermap.watermap_scoring
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InvertSubMenu
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LabelAtom
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LabelAtomIdentSubMenu
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schrodinger.graphics3d.common
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LigandSitesSubMenu
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MWidgetAction
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schrodinger.infra
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schrodinger.infra._licensing
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schrodinger.application.mcpro.modelsystemwizard
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ObjectFreeContextSubMenu
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schrodinger.infra._ska
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InputGroup
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PMLMenu
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schrodinger.infra.ark
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PolarContactsSubMenu
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schrodinger.infra.licensing
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InputGroup
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PresetSubMenu
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schrodinger.infra.mm
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PrettyPubPreset
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schrodinger.infra.mmbitset
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schrodinger.project
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RecentColorSubMenu
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schrodinger.infra.mmerr
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schrodinger.structutils.sort
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RegionInfo
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schrodinger.infra.mmim
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TreeParser
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schrodinger.infra.mmlist
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schrodinger.protein.captermini
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ResultsWindow
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schrodinger.infra.mmobject
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schrodinger.application.desmond.table
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RockData
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schrodinger.infra.mopac
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TreeWizard
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SelectedAtomContextActionSubMenu
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schrodinger.infra.propedit
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ASLObject
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SelectedAtomContextMenu
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schrodinger.infra.table
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HuntCache
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SelectionSubMenu
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schrodinger.infra.util
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_JobInitializer
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ShowMenu
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schrodinger.job
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schrodinger.structutils.minimize
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ShowOrganicMenu
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schrodinger.job.app
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schrodinger.structutils.analyze
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ShowSubstructureMenu
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schrodinger.job.hunt_cache
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schrodinger.structutils.build
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SimplePreset
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schrodinger.job.jobcontrol
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schrodinger.ui.appframework
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SpaceContextMenu
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schrodinger.job.launcher
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schrodinger.ui.qt.style
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SubstructureContextSubMenu
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schrodinger.job.queue
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SurfaceAreaSubMenu
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schrodinger.job.remote_command
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Stage
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ToggleState
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schrodinger.job.timestamp
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Table
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ToggleStateSubMenu
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schrodinger.job.util
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Project
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CriteriaListModel
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schrodinger.pipeline
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schrodinger.trajectory.desmondsimulation
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PropFilterDialog
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schrodinger.pipeline.input
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PropertySelectorWithRanges
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schrodinger.pipeline.pipeio
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StringDatabaseCriterion
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schrodinger.pipeline.pipeline
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ValueSelectionDialog
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schrodinger.pipeline.pipeutils
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schrodinger.maestro.maestro
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schrodinger.pipeline.stage
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schrodinger.maestro.maestro
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Mutation
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schrodinger.pipeline.stages
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schrodinger.maestro.maestro
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Mutator
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schrodinger.pipeline.stages.combine
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schrodinger.maestro.maestro
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OrderedResidueDict
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schrodinger.pipeline.stages.convert
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schrodinger.maestro.maestro
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PrimeConfig
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schrodinger.pipeline.stages.filtering
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PrimeStructure
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schrodinger.pipeline.stages.gencodes
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PropertyCalculator
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schrodinger.pipeline.stages.glide
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Refiner
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schrodinger.pipeline.stages.ligprep
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DataModel
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schrodinger.pipeline.stages.macromodel
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schrodinger.maestro.maestro
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ReportFrame
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schrodinger.pipeline.stages.mmgbsa
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schrodinger.maestro.maestro
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schrodinger.pipeline.stages.phase
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_Cell
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HomologyRama
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schrodinger.pipeline.stages.prime
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MultiReportWithChart
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schrodinger.pipeline.stages.pull
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ProteinStructureQualityViewer
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schrodinger.pipeline.stages.qikprop
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McproSystemBuilder
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SlidableHLine
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schrodinger.pipeline.stages.qsite
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schrodinger.pipeline.stages.rmsd
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schrodinger.trajectory.analysis
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SlidableVLine
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schrodinger.pipeline.stages.semiemp
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SliderPlot
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schrodinger.project
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schrodinger.protein
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_StructureRingIterator
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schrodinger.protein.analysis
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_StructureAtom
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schrodinger.protein.assignment
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schrodinger.protein.captermini
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WidgetTable
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SequenceDockWidget
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schrodinger.protein.findhets
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schrodinger.protein.getpdb
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schrodinger.protein.helix
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schrodinger.protein.membrane
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CanvasFingerprintClusterGUI
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schrodinger.protein.rotamers
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schrodinger.protein.sequence
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schrodinger.structure
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DistanceMatrixPlotDialog
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schrodinger.structutils
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schrodinger.structutils.analyze
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schrodinger.structutils.assignbondorders
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schrodinger.structutils.build
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schrodinger.structutils.color
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schrodinger.structutils.interactionfp
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CanvasFingerprintSimilarityCLI
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schrodinger.structutils.interactions
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CanvasSimilarityNotImplemented
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schrodinger.structutils.io
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SubstCoreDatabase
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schrodinger.structutils.measure
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DebugEventSocketProxy
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schrodinger.structutils.minimize
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DebugParser
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schrodinger.structutils.rmsd
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DebugTokenStream
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schrodinger.structutils.sitealign
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DebugTreeAdaptor
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schrodinger.structutils.smiles
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RecordDebugEventListener
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schrodinger.structutils.smilesfilter
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TraceDebugEventListener
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schrodinger.structutils.sort
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DFA
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schrodinger.structutils.structalign
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DOTTreeGenerator
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schrodinger.structutils.transform
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EarlyExitException
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schrodinger.trajectory
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FailedPredicateException
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schrodinger.trajectory.analysis
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MismatchedRangeException
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schrodinger.trajectory.analysistool
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MismatchedSetException
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schrodinger.trajectory.analyze_trajectories
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MismatchedTokenException
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_item_delete_method
(in
_FEPIOAtomMapContainer
)
__init__()
(in
MismatchedTreeNodeException
)
__package__
(in
schrodinger.trajectory.cmsstructure
)
_item_delete_method
(in
_FEPIOBondMapContainer
)
__init__()
(in
MissingTokenException
)
__package__
(in
schrodinger.trajectory.desmondsimulation
)
_item_delete_method
(in
_FEPIODihedMapContainer
)
__init__()
(in
NoViableAltException
)
__package__
(in
schrodinger.trajectory.ffstructure
)
_item_delete_method
(in
_FEPIOExclMapContainer
)
__init__()
(in
RecognitionException
)
__package__
(in
schrodinger.trajectory.rmsd2d
)
_item_delete_method
(in
_FEPIOPairMapContainer
)
__init__()
(in
LexerMain
)
__package__
(in
schrodinger.ui
)
_item_delete_method
(in
_FFIOAngleContainer
)
__init__()
(in
ParserMain
)
__package__
(in
schrodinger.ui.appframework
)
_item_delete_method
(in
_FFIOAngleFBHWContainer
)
__init__()
(in
WalkerMain
)
__package__
(in
schrodinger.ui.chooseligand
)
_item_delete_method
(in
_FFIOBondContainer
)
__init__()
(in
_Main
)
__package__
(in
schrodinger.ui.ligfilter
)
_item_delete_method
(in
_FFIOConstraintContainer
)
__init__()
(in
BaseRecognizer
)
__package__
(in
schrodinger.ui.ligfilter_definition_dialog_ui
)
_item_delete_method
(in
_FFIODihedralContainer
)
__init__()
(in
Lexer
)
__package__
(in
schrodinger.ui.ligfilter_ui
)
_item_delete_method
(in
_FFIOExclusionContainer
)
__init__()
(in
Parser
)
__package__
(in
schrodinger.ui.macromodel
)
_item_delete_method
(in
_FFIOImproperFBHWContainer
)
__init__()
(in
ParserRuleReturnScope
)
__package__
(in
schrodinger.ui.multilistbox
)
_item_delete_method
(in
_FFIOPairContainer
)
__init__()
(in
RecognizerSharedState
)
__package__
(in
schrodinger.ui.picking
)
_item_delete_method
(in
_FFIOPosFBHWContainer
)
__init__()
(in
ANTLRFileStream
)
__package__
(in
schrodinger.ui.propertyselector
)
_item_delete_method
(in
_FFIOPseudoContainer
)
__init__()
(in
ANTLRInputStream
)
__package__
(in
schrodinger.ui.qt
)
_item_delete_method
(in
_FFIORestraintContainer
)
__init__()
(in
ANTLRStringStream
)
__package__
(in
schrodinger.ui.qt.appframework
)
_item_delete_method
(in
_FFIOSiteContainer
)
__init__()
(in
CommonTokenStream
)
__package__
(in
schrodinger.ui.qt.filedialog
)
_item_delete_method
(in
_FFIOStretchFBHWContainer
)
__init__()
(in
DeleteOp
)
__package__
(in
schrodinger.ui.qt.style
)
_item_delete_method
(in
_FFIOVdwtypeContainer
)
__init__()
(in
ReplaceOp
)
__package__
(in
schrodinger.ui.rama
)
_item_delete_method
(in
_FFIOVdwtypescombinedContainer
)
__init__()
(in
RewriteOperation
)
__package__
(in
schrodinger.ui.sequencealignment
)
_item_delete_method
(in
_FFIOVirtualContainer
)
__init__()
(in
TokenRewriteStream
)
__package__
(in
schrodinger.ui.sketcher
)
_job_manager
(in
schrodinger.job.jobcontrol
)
__init__()
(in
ClassicToken
)
__package__
(in
schrodinger.ui.widget
)
_job_objects
(in
schrodinger.pipeline.pipeline
)
__init__()
(in
CommonToken
)
__package__
(in
schrodinger.ui.widget.default
)
_jobFailed()
(in
JobDJ
)
__init__()
(in
BaseTree
)
__package__
(in
schrodinger.ui.widget.pmwwidget
)
_jobFinished()
(in
JobDJ
)
__init__()
(in
CommonErrorNode
)
__package__
(in
schrodinger.ui.widget.tkinterwidget
)
_JobInitializer
(in
schrodinger.job.jobcontrol
)
__init__()
(in
CommonTree
)
__package__
(in
schrodinger.ui.widgettable
)
_JobManager
(in
schrodinger.job.jobcontrol
)
__init__()
(in
CommonTreeNodeStream
)
__package__
(in
schrodinger.utils
)
_JobResourceHolder
(in
schrodinger.job.jobcontrol
)
__init__()
(in
RewriteCardinalityException
)
__package__
(in
schrodinger.utils.cmdline
)
_keep_largest_molecule()
(in
schrodinger.structutils.smiles
)
__init__()
(in
RewriteEarlyExitException
)
__package__
(in
schrodinger.utils.fileutils
)
_keyCheck()
(in
MopacResults
)
__init__()
(in
RewriteRuleElementStream
)
__package__
(in
schrodinger.utils.imputils
)
_KeywordProcessor
(in
schrodinger.trajectory.analyze_trajectories
)
__init__()
(in
TreeParser
)
__package__
(in
schrodinger.utils.ligfilter
)
_last_dir_used
(in
schrodinger.ui.widget.tkinterwidget
)
__init__()
(in
TreeRuleReturnScope
)
__package__
(in
schrodinger.utils.log
)
_last_numcal
(in
MopacResults
)
__init__()
(in
TreeVisitor
)
__package__
(in
schrodinger.utils.moduleproxy
)
_last_selected_directory
(in
schrodinger.ui.qt.filedialog
)
__init__()
(in
TreePattern
)
__package__
(in
schrodinger.utils.openpdf
)
_last_selected_filter
(in
schrodinger.ui.qt.filedialog
)
__init__()
(in
TreePatternLexer
)
__package__
(in
schrodinger.utils.preferences
)
_launchVrun()
(in
EnergyGroupAnalysis
)
__init__()
(in
TreePatternParser
)
__package__
(in
schrodinger.utils.sea
)
_leave_event_handler()
(in
TextButton
)
__init__()
(in
TreeWizard
)
__package__
(in
schrodinger.utils.subproc
)
_licensing
(in
schrodinger.infra
)
__init__()
(in
AslValidator
)
__package__
(in
schrodinger.utils.subprocess
)
_lighting
(in
ArrowCore
)
__init__()
(in
Engine
)
__package__
(in
schrodinger.utils.system
)
_lighting
(in
Box
)
__init__()
(in
Time
)
__package__
(in
schrodinger.utils.timers
)
_lighting
(in
Polygon
)
__init__()
(in
Job
)
__package__
(in
schrodinger.utils.urllib
)
_lighting
(in
Polyhedron
)
__init__()
(in
JobAdapter
)
__pos__()
(in
Measurement
)
_lighting
(in
Quadrilateral
)
__init__()
(in
JobInput
)
__radd__()
(in
Measurement
)
_lighting
(in
SphereCore
)
__init__()
(in
JobOutput
)
__rdiv__()
(in
Measurement
)
_lighting_model
(in
ArrowCore
)
__init__()
(in
JobStatus
)
__refmemo
(in
Atom
)
_lighting_model
(in
Box
)
__init__()
(in
ParseError
)
__repr__()
(in
Calculator
)
_lighting_model
(in
Polygon
)
__init__()
(in
Queue
)
__repr__()
(in
Measurement
)
_lighting_model
(in
Polyhedron
)
__init__()
(in
RetryTimer
)
__repr__()
(in
BondCharge
)
_lighting_model
(in
Quadrilateral
)
__init__()
(in
StageBase
)
__repr__()
(in
Dipole
)
_lighting_model
(in
SphereCore
)
__init__()
(in
__metaclass__
)
__repr__()
(in
FukuiIndices
)
_LigMut
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
StopRequest
)
__repr__()
(in
JaguarAtomicResults
)
_line_width
(in
Box
)
__init__()
(in
_create_param_when_needed
)
__repr__()
(in
Orbital
)
_list2array()
(in
schrodinger.application.desmond.autopartition
)
__init__()
(in
AtomGroup
)
__repr__()
(in
Cut
)
_list_defaults
(in
QMRegion
)
__init__()
(in
Cms
)
__repr__()
(in
HydrogenCap
)
_list_filter()
(in
Key
)
__init__()
(in
Constraint
)
__repr__()
(in
License
)
_list_filter()
(in
schrodinger.utils.sea
)
__init__()
(in
Pseudo
)
__repr__()
(in
Bitset
)
_LIST_PRECISION
(in
schrodinger.application.jaguar.output
)
__init__()
(in
Restrain
)
__repr__()
(in
mmlist
)
_load_cache()
(in
HuntCache
)
__init__()
(in
Site
)
__repr__()
(in
Table
)
_load_scheme_dict()
(in
schrodinger.structutils.color
)
__init__()
(in
Vdw
)
__repr__()
(in
TableRow
)
_log
(in
schrodinger.application.jaguar.output
)
__init__()
(in
Helper
)
__repr__()
(in
Host
)
_log()
(in
Job
)
__init__()
(in
_FepSchedule
)
__repr__()
(in
Job
)
_log()
(in
StageBase
)
__init__()
(in
_create_when_needed
)
__repr__()
(in
Project
)
_logger
(in
schrodinger.application.mopac
)
__init__()
(in
AdvLabel
)
__repr__()
(in
ProjectRow
)
_logger
(in
schrodinger.infra.mm
)
__init__()
(in
CpuValidator
)
__repr__()
(in
Structure
)
_logger
(in
schrodinger.job.launcher
)
__init__()
(in
DesresTradeMark
)
__repr__()
(in
ConformerRmsd
)
_logger
(in
schrodinger.job.util
)
__init__()
(in
EntryField
)
__repr__()
(in
JobInputParams
)
_loglevel_stacks
(in
schrodinger.infra.mmerr
)
__init__()
(in
FileEntry
)
__repr__()
(in
MultiInputParams
)
_logZeroDivisionError()
(in
Calculator
)
__init__()
(in
StartDialog1
)
__repr__()
(in
JobInputParams
)
_MacroModel
(in
schrodinger.application.macromodel.input
)
__init__()
(in
StartDialog2
)
__rmul__()
(in
Measurement
)
_Main
(in
schrodinger.application.desmond.antlr3.main
)
__init__()
(in
StartDialogBase
)
__rsub__()
(in
Measurement
)
_main()
(in
schrodinger.application.lid.ligand_interaction_diagram
)
__init__()
(in
_SdDetailFrame
)
__set_annealing()
(in
schrodinger.application.desmond.config
)
_main()
(in
schrodinger.structutils.smilesfilter
)
__init__()
(in
_SdIncorpFrame
)
__set_backend()
(in
schrodinger.application.desmond.config
)
_make_ark_str()
(in
Startup
)
__init__()
(in
_SdJobFrame
)
__set_checkpt()
(in
schrodinger.application.desmond.config
)
_make_mae_writer()
(in
schrodinger.structutils.smilesfilter
)
__init__()
(in
_SdMasterjob
)
__set_convergence()
(in
schrodinger.application.desmond.config
)
_make_scratch_dir()
(in
schrodinger.application.mopac
)
__init__()
(in
_SdSubjobFrame
)
__set_coulomb_method()
(in
schrodinger.application.desmond.config
)
_make_smiles_writer()
(in
schrodinger.structutils.smilesfilter
)
__init__()
(in
EnergyComponent
)
__set_cpu()
(in
schrodinger.application.desmond.config
)
_makeItem()
(in
AppFramework
)
__init__()
(in
EnergyGroup
)
__set_cutoff_radius()
(in
schrodinger.application.desmond.config
)
_makeItem()
(in
AppFramework
)
__init__()
(in
EnergyGroupAnalysis
)
__set_elapsed_time()
(in
schrodinger.application.desmond.config
)
_makeMenu()
(in
AppFramework
)
__init__()
(in
PairDict
)
__set_energy_group()
(in
schrodinger.application.desmond.config
)
_makeMenu()
(in
AppFramework
)
__init__()
(in
_Group
)
__set_eneseq()
(in
schrodinger.application.desmond.config
)
_makeValidationBasename()
(in
ReorgFitting
)
__init__()
(in
ArraySyntax
)
__set_ensemble()
(in
schrodinger.application.desmond.config
)
_makeValidationBasename()
(in
Complex
)
__init__()
(in
BinaryThreadSyntax
)
__set_fep()
(in
schrodinger.application.desmond.config
)
_map
(in
_Evalor
)
__init__()
(in
MetaSyntax
)
__set_glue()
(in
schrodinger.application.desmond.config
)
_map_event_handler()
(in
Table
)
__init__()
(in
RMSDSyntax
)
__set_maeff_output()
(in
schrodinger.application.desmond.config
)
_map_to_dict()
(in
schrodinger.structure
)
__init__()
(in
SimpleSyntax
)
__set_max_steps()
(in
schrodinger.application.desmond.config
)
_map_to_dict()
(in
schrodinger.structutils.build
)
__init__()
(in
ThreadSyntax
)
__set_meta()
(in
schrodinger.application.desmond.config
)
_mark_atom()
(in
Workspace
)
__init__()
(in
mexpLexer
)
__set_model_file()
(in
schrodinger.application.desmond.config
)
_mark_res()
(in
_ProMut
)
__init__()
(in
mexpParser
)
__set_num_vector()
(in
schrodinger.application.desmond.config
)
_markFinished()
(in
JobControlJob
)
__init__()
(in
atom_return
)
__set_pressure()
(in
schrodinger.application.desmond.config
)
_match()
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
bind_return
)
__set_randomize_velocity()
(in
schrodinger.application.desmond.config
)
_match()
(in
schrodinger.utils.sea
)
__init__()
(in
block_return
)
__set_replica()
(in
schrodinger.application.desmond.config
)
_maxclock32
(in
IncrementalTimer
)
__init__()
(in
comp_return
)
__set_simbox()
(in
schrodinger.application.desmond.config
)
_McproProt
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
decl_meta_return
)
__set_steepest_descent_steps()
(in
schrodinger.application.desmond.config
)
_mcSolvDep()
(in
DrawSolventPanel
)
__init__()
(in
decl_output_return
)
__set_surface_tension()
(in
schrodinger.application.desmond.config
)
_MdcBase
(in
schrodinger.application.desmond.gui
)
__init__()
(in
decl_return
)
__set_taper()
(in
schrodinger.application.desmond.config
)
_merge_subjobs()
(in
schrodinger.application.macromodel.paraUtils
)
__init__()
(in
expComp_return
)
__set_temperature()
(in
schrodinger.application.desmond.config
)
_method_keywords
(in
schrodinger.application.mopac
)
__init__()
(in
exprOrBind_return
)
__set_time()
(in
schrodinger.application.desmond.config
)
_methods
(in
schrodinger.application.mopac
)
__init__()
(in
expr_return
)
__set_timestep()
(in
schrodinger.application.desmond.config
)
_minimizer_float_property()
(in
schrodinger.structutils.minimize
)
__init__()
(in
factor_return
)
__set_trajectory()
(in
schrodinger.application.desmond.config
)
_minimizer_int_property()
(in
schrodinger.structutils.minimize
)
__init__()
(in
fcnCall_return
)
__set_val()
(in
CfgAtom
)
_miniSolvDep()
(in
DrawSolventPanel
)
__init__()
(in
header_return
)
__set_val()
(in
Atom
)
_minVersionPresent()
(in
Stage
)
__init__()
(in
if__return
)
__set_val()
(in
List
)
_mmasl
(in
schrodinger.trajectory.atomselection
)
__init__()
(in
iter_return
)
__set_val()
(in
Map
)
_mmlist_from_pylist()
(in
schrodinger.infra.mmlist
)
__init__()
(in
meta_term_return
)
__set_vrun_frameset()
(in
schrodinger.application.desmond.config
)
_mmlist_to_pylist()
(in
schrodinger.infra.mmlist
)
__init__()
(in
output_term_return
)
__setattr__()
(in
License
)
_mmproj_set_data_dispatch_table
(in
schrodinger.maestro.maestro
)
__init__()
(in
prog_return
)
__setattr__()
(in
Map
)
_mmrotamer_initializer
(in
schrodinger.protein.rotamers
)
__init__()
(in
series_return
)
__setitem__()
(in
PairDict
)
_mmstereo_re
(in
schrodinger.structutils.smiles
)
__init__()
(in
signedExpComp_return
)
__setitem__()
(in
_ElementProperty
)
_model_source_changed()
(in
InputGroup
)
__init__()
(in
static_return
)
__setitem__()
(in
_FEPIOProperty
)
_module_name
(in
schrodinger.infra.table
)
__init__()
(in
varWithType_return
)
__setitem__()
(in
_FEPIOSubBlockProperty
)
_module_name
(in
schrodinger.project
)
__init__()
(in
ASLObject
)
__setitem__()
(in
_FFIOProperty
)
_Molecule
(in
schrodinger.structure
)
__init__()
(in
Bind
)
__setitem__()
(in
_FFIOSubBlockProperty
)
_Monitor
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
Env
)
__setitem__()
(in
GenOptions
)
_monitorJobs()
(in
JobDJ
)
__init__()
(in
FcnCall
)
__setitem__()
(in
QMRegion
)
_MopacDict
(in
schrodinger.application.qsite.input
)
__init__()
(in
If
)
__setitem__()
(in
_GenDict
)
_multicomb()
(in
schrodinger.application.desmond.autopartition
)
__init__()
(in
Iter
)
__setitem__()
(in
_MopacDict
)
_MultiJobFinalizer
(in
schrodinger.job.queue
)
__init__()
(in
Let
)
__setitem__()
(in
MMIMArgList
)
_mutate()
(in
_ProMut
)
__init__()
(in
Lit
)
__setitem__()
(in
MMIMDict
)
_mutate_impl()
(in
_ProMut
)
__init__()
(in
Meta
)
__setitem__()
(in
mmlist
)
_mw_event_handler()
(in
Table
)
__init__()
(in
Node
)
__setitem__()
(in
Table
)
_my_key()
(in
Key
)
__init__()
(in
Series
)
__setitem__()
(in
TableRow
)
_MySplit
(in
schrodinger.utils.ligfilter
)
__init__()
(in
String
)
__setitem__()
(in
property_dict
)
_Neut
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
Var
)
__setitem__()
(in
ProjectRow
)
_new_pdb_names
(in
schrodinger.structutils.assignbondorders
)
__init__()
(in
binding
)
__setitem__()
(in
PropertyDictionary
)
_newclass
(in
schrodinger.infra.licensing
)
__init__()
(in
_create_when_needed
)
__setitem__()
(in
_StructureAtomProperty
)
_newjob()
(in
Task
)
__init__()
(in
AdvLabel
)
__setitem__()
(in
_StructureBondProperty
)
_newResults()
(in
TextParser
)
__init__()
(in
DesmondApp
)
__setitem__()
(in
_StructureProperty
)
_next()
(in
RewriteRuleElementStream
)
__init__()
(in
FragClass
)
__setitem__()
(in
_FFAngleProperty
)
_next_multiset_comb()
(in
schrodinger.application.desmond.autopartition
)
__init__()
(in
HelpLabel
)
__setitem__()
(in
_FFBondProperty
)
_nextColId()
(in
WidgetTable
)
__init__()
(in
HorizontalBar
)
__setitem__()
(in
_FFConstraintProperty
)
_nextFile()
(in
MultiFileReader
)
__init__()
(in
McproApp
)
__setitem__()
(in
_FFDihedralProperty
)
_nextRowId()
(in
WidgetTable
)
__init__()
(in
MultiSelectComboBox
)
__setitem__()
(in
_FFExclusionProperty
)
_nodeST
(in
DOTTreeGenerator
)
__init__()
(in
MutClass
)
__setitem__()
(in
_FFPairProperty
)
_non_mm_functions
(in
schrodinger.infra.mm
)
__init__()
(in
PathModel
)
__setitem__()
(in
_FFPseudoProperty
)
_normalize_tag()
(in
Sea
)
__init__()
(in
PickAtomToggle
)
__setitem__()
(in
_FFRestraintProperty
)
_num_elements_method
(in
_FEPIOOtherBlock
)
__init__()
(in
PickBondToggle
)
__setitem__()
(in
_FFSiteProperty
)
_num_elements_method
(in
_FFIOOtherBlock
)
__init__()
(in
ResiduesDelegate
)
__setitem__()
(in
_FFVdwtypeProperty
)
_num_elements_method()
(in
_OtherBlock
)
__init__()
(in
ResiduesModel
)
__setitem__()
(in
_FFVirtualProperty
)
_old_keywords
(in
schrodinger.application.glide.glide
)
__init__()
(in
StrucListModel
)
__setitem__()
(in
List
)
_open_file()
(in
schrodinger.application.mopac
)
__init__()
(in
_App
)
__setitem__()
(in
Map
)
_opengl_level_changed()
(in
schrodinger.graphics3d.common
)
__init__()
(in
_Atom
)
__setstate__()
(in
Job
)
_openWriter()
(in
SmilesCsvWriter
)
__init__()
(in
_DesmondProt
)
__setstate__()
(in
StageBase
)
_operator
(in
schrodinger.application.desmond.cmj
)
__init__()
(in
_LigMut
)
__setstate__()
(in
JobControlJob
)
_orbe_precision
(in
JaguarResults
)
__init__()
(in
_McproProt
)
__setstate__()
(in
JobDJ
)
_orig_init
(in
schrodinger.utils.urllib
)
__init__()
(in
_Pert
)
__setstate__()
(in
LinkedList
)
_other_block_class
(in
_OtherBlockContainer
)
__init__()
(in
_Site
)
__setstate__()
(in
Sea
)
_OtherBlock
(in
schrodinger.application.desmond.ffiostructure
)
__init__()
(in
_ProMut
)
__step_cmd()
(in
schrodinger.application.mcpro.guide
)
_OtherBlockContainer
(in
schrodinger.application.desmond.ffiostructure
)
__init__()
(in
_ProtItem
)
__str__()
(in
FrameworkTemplate
)
_output_logger
(in
schrodinger.structutils.smilesfilter
)
__init__()
(in
_RingMut
)
__str__()
(in
FrameworkTemplate
)
_paint_asl()
(in
Workspace
)
__init__()
(in
DeltaEnergy
)
__str__()
(in
License
)
_paint_lig()
(in
_LigMut
)
__init__()
(in
FreeEnergyContrib
)
__str__()
(in
StringDatabaseCriterion
)
_paint_lig()
(in
_RingMut
)
__init__()
(in
CMSReader
)
__str__()
(in
FailedPredicateException
)
_paint_res()
(in
_ProMut
)
__init__()
(in
FFIOStructure
)
__str__()
(in
MismatchedNotSetException
)
_param_jlaunch_opt_check()
(in
StageBase
)
__init__()
(in
_Element
)
__str__()
(in
MismatchedRangeException
)
_parent_dir()
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
_ElementProperty
)
__str__()
(in
MismatchedSetException
)
_parse()
(in
TreeWizard
)
__init__()
(in
_FEPIO
)
__str__()
(in
MismatchedTokenException
)
_parse_arg()
(in
Startup
)
__init__()
(in
_FEPIOProperty
)
__str__()
(in
MismatchedTreeNodeException
)
_parse_colors_file()
(in
schrodinger.structutils.color
)
__init__()
(in
_FEPIOSubBlock
)
__str__()
(in
MissingTokenException
)
_parse_composite_key()
(in
Map
)
__init__()
(in
_FEPIOSubBlockContainer
)
__str__()
(in
NoViableAltException
)
_parse_options()
(in
schrodinger.structutils.smilesfilter
)
__init__()
(in
_FEPIOSubBlockMeta
)
__str__()
(in
UnwantedTokenException
)
_parse_scheme_files()
(in
schrodinger.structutils.color
)
__init__()
(in
_FEPIOSubBlockProperty
)
__str__()
(in
CommonToken
)
_parseActiveTitles()
(in
Calculator
)
__init__()
(in
_FFIO
)
__str__()
(in
CommonTreeNodeStream
)
_parseCsvResults()
(in
Calculator
)
__init__()
(in
_FFIOProperty
)
__str__()
(in
Job
)
_parseData()
(in
MetaDynamicsAnalysis
)
__init__()
(in
_FFIOSubBlock
)
__str__()
(in
JobStatus
)
_parseGlideReptResults()
(in
Calculator
)
__init__()
(in
_FFIOSubBlockContainer
)
__str__()
(in
Restrain
)
_parseInp()
(in
MetaDynamicsAnalysis
)
__init__()
(in
_FFIOSubBlockMeta
)
__str__()
(in
Bind
)
_parseOutput()
(in
EnergyGroupAnalysis
)
__init__()
(in
_FFIOSubBlockProperty
)
__str__()
(in
Env
)
_parseStructureFileResults()
(in
Calculator
)
__init__()
(in
_OtherBlock
)
__str__()
(in
FcnCall
)
_parseStructureResults()
(in
Calculator
)
__init__()
(in
_OtherBlockContainer
)
__str__()
(in
If
)
_parseTableResults()
(in
Calculator
)
__init__()
(in
GaussianFilter
)
__str__()
(in
Iter
)
_passesPropFilters()
(in
FingerprintFromFileGenerator
)
__init__()
(in
AdvOptionsFrame
)
__str__()
(in
Let
)
_PBCMeasureMananger
(in
schrodinger.trajectory.analysis
)
__init__()
(in
AtomGroupDelegate
)
__str__()
(in
Lit
)
_pdb_codes
(in
schrodinger.protein.helix
)
__init__()
(in
AtomGroupFrame
)
__str__()
(in
Meta
)
_pdb_lookup
(in
schrodinger.protein.helix
)
__init__()
(in
AtomGroupModel
)
__str__()
(in
Series
)
_pdb_lookup
(in
schrodinger.structure
)
__init__()
(in
AtomGroupRow
)
__str__()
(in
String
)
_pdf_viewers
(in
schrodinger.utils.openpdf
)
__init__()
(in
EnsembleClassFrame
)
__str__()
(in
Var
)
_peel_off_ligand()
(in
_ProMut
)
__init__()
(in
EnsembleTab
)
__str__()
(in
binding
)
_periodicCallback()
(in
AppFramework
)
__init__()
(in
GuiApp
)
__str__()
(in
_FEPIOSubBlock
)
_Pert
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
HorizontalBar
)
__str__()
(in
_FFIOSubBlock
)
_PERT_ID
(in
McproSystemBuilder
)
__init__()
(in
InputGroup
)
__str__()
(in
CfgAtom
)
_PERT_TRANS
(in
McproSystemBuilder
)
__init__()
(in
IntegrationTab
)
__str__()
(in
Key
)
_pick_callback
(in
schrodinger.maestro.maestro
)
__init__()
(in
InteractionTab
)
__str__()
(in
List
)
_PickToggle
(in
schrodinger.ui.picking
)
__init__()
(in
MdGroup
)
__str__()
(in
Measurement
)
_planarAngle()
(in
_PBCMeasureMananger
)
__init__()
(in
MdcAdvancedDialog
)
__str__()
(in
Ensemble
)
_play_movie()
(in
ModelSystemPanel
)
__init__()
(in
MdcMiscTab
)
__str__()
(in
Constraint
)
_polygon_mode
(in
Box
)
__init__()
(in
MinAdvancedDialog
)
__str__()
(in
JaguarAtomicResults
)
_polygon_mode
(in
Polygon
)
__init__()
(in
MinMiscTab
)
__str__()
(in
JaguarOptions
)
_polygon_mode
(in
Polyhedron
)
__init__()
(in
MinOutputFrame
)
__str__()
(in
NormalMode
)
_polygon_mode
(in
Quadrilateral
)
__init__()
(in
MinimizationTab
)
__str__()
(in
Orbital
)
_populate_frag_tbl()
(in
_RingMut
)
__init__()
(in
MinimizerFrame
)
__str__()
(in
ThermoCollection
)
_position()
(in
WidgetTable
)
__init__()
(in
OutputTab
)
__str__()
(in
ThermoProp
)
_position()
(in
_Cell
)
__init__()
(in
PosResDelegate
)
__str__()
(in
Cut
)
_position()
(in
_Column
)
__init__()
(in
PosResModel
)
__str__()
(in
HydrogenCap
)
_position()
(in
_Row
)
__init__()
(in
PosResRow
)
__str__()
(in
MmException
)
_postbuild()
(in
AssignForcefield
)
__init__()
(in
RandVelFrame
)
__str__()
(in
Bitset
)
_postbuild()
(in
SystemBuilder
)
__init__()
(in
RelaxFrame
)
__str__()
(in
Table
)
_postprocess_after_importing()
(in
InputGroup
)
__init__()
(in
RestraintsTab
)
__str__()
(in
Host
)
_ppg_host_change()
(in
StartDialog2
)
__init__()
(in
SimOptionsFrame
)
__str__()
(in
JobControlJob
)
_prepare_filter()
(in
GaussianFilter
)
__init__()
(in
TableModel
)
__str__()
(in
CommandError
)
_prepareCfg()
(in
EnergyGroupAnalysis
)
__init__()
(in
TempItemDelegate
)
__str__()
(in
Grid
)
_prepareCmsfile()
(in
EnergyGroupAnalysis
)
__init__()
(in
_AtomGroup
)
__str__()
(in
PhaseDB
)
_prepareStructure()
(in
ConformerRmsd
)
__init__()
(in
_BaseAdvancedDialog
)
__str__()
(in
Structures
)
_prepareStructures()
(in
ConformerRmsdX
)
__init__()
(in
_BaseGroup
)
__str__()
(in
Text
)
_prepInscode()
(in
PropertyCalculator
)
__init__()
(in
_MdcBase
)
__str__()
(in
EntryGroup
)
_print()
(in
Job
)
__init__()
(in
Guide
)
__str__()
(in
Project
)
_print()
(in
StageBase
)
__init__()
(in
_Step
)
__str__()
(in
PropertyName
)
_print()
(in
schrodinger.application.desmond.cmj
)
__init__()
(in
_Global
)
__str__()
(in
SmilesStructure
)
_print()
(in
_FepSchedule
)
__init__()
(in
Entry
)
__str__()
(in
TextualStructure
)
_print()
(in
FepSchedule
)
__init__()
(in
EntryGroup
)
__str__()
(in
_Chain
)
_print_descriptors()
(in
schrodinger.application.moldescriptors
)
__init__()
(in
Workspace
)
__str__()
(in
_Molecule
)
_print_subjob_logfile()
(in
schrodinger.application.macromodel.paraUtils
)
__init__()
(in
AtomGroup
)
__str__()
(in
_Residue
)
_print_validation_results()
(in
FitNewxpReorgEnergy
)
__init__()
(in
CfgAtom
)
__str__()
(in
_Ring
)
_printDebug()
(in
Table
)
__init__()
(in
FepSchedule
)
__str__()
(in
_StructureAtom
)
_printDebug()
(in
Project
)
__init__()
(in
Key
)
__str__()
(in
_StructureBond
)
_printJobInfo()
(in
App
)
__init__()
(in
List
)
__str__()
(in
Ligand
)
_process_angle()
(in
_KeywordProcessor
)
__init__()
(in
_Evalor
)
__str__()
(in
Color
)
_process_distance()
(in
_KeywordProcessor
)
__init__()
(in
Measurement
)
__str__()
(in
ConformerRmsd
)
_process_energy()
(in
_KeywordProcessor
)
__init__()
(in
CV
)
__str__()
(in
ConformerRmsdX
)
_process_hbonds()
(in
_KeywordProcessor
)
__init__()
(in
CVAngle
)
__str__()
(in
Criterion
)
_process_planar_angle()
(in
_KeywordProcessor
)
__init__()
(in
CVDihedral
)
__str__()
(in
Definition
)
_process_rmsd()
(in
_KeywordProcessor
)
__init__()
(in
CVDist
)
__str__()
(in
Atom
)
_process_rmsf()
(in
_KeywordProcessor
)
__init__()
(in
CVrmsd
)
__str__()
(in
List
)
_process_rog()
(in
_KeywordProcessor
)
__init__()
(in
CVzdist0
)
__str__()
(in
Map
)
_process_torsion()
(in
_KeywordProcessor
)
__init__()
(in
CmsModel
)
__str__()
(in
Sea
)
_processFF()
(in
FFStructure
)
__init__()
(in
Meta
)
__str__()
(in
ProxyTunnelError
)
_ProMut
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
MetaDynamicsAnalysis
)
__sub__()
(in
Measurement
)
_property_class
(in
_Element
)
__init__()
(in
_Backend
)
__sub__()
(in
NormalMode
)
_ProtItem
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
Help
)
__sub__()
(in
Orbital
)
_proxy()
(in
_FEPIO
)
__init__()
(in
Startup
)
__sub__()
(in
ThermoCollection
)
_proxy()
(in
_FFIO
)
__init__()
(in
__metaclass__
)
__sub__()
(in
ThermoProp
)
_proxy()
(in
Structure
)
__init__()
(in
Array_Prop
)
__swig_getmethods__
(in
License
)
_pruneGraph()
(in
BaseJob
)
__init__()
(in
Block
)
__swig_setmethods__
(in
License
)
_push_to_jobdj()
(in
Queue
)
__init__()
(in
BoxSize
)
__test()
(in
schrodinger.application.desmond.measurement
)
_qmregion_int_default
(in
schrodinger.application.qsite.input
)
__init__()
(in
E_f
)
__tuple__()
(in
Measurement
)
_qmregion_str_default
(in
schrodinger.application.qsite.input
)
__init__()
(in
E_k
)
__TYPE
(in
schrodinger.application.desmond.mdkey
)
_queueJob()
(in
JobDJ
)
__init__()
(in
E_x
)
__TYPE
(in
schrodinger.utils.sea
)
_quit()
(in
Tk
)
__init__()
(in
Energy
)
__warningregistry__
(in
schrodinger.ui.rama
)
_quote()
(in
InputConfig
)
__init__()
(in
Job_Details
)
__xcheck
(in
schrodinger.application.desmond.mdkey
)
_RamachandranCallback
(in
schrodinger.trajectory.analysis
)
__init__()
(in
PotentialEnergy
)
__xcheck
(in
schrodinger.utils.sea
)
_read()
(in
AppFramework
)
__init__()
(in
Pressure
)
_abc_invalidation_counter
(in
ABCMeta
)
_read()
(in
AppFramework
)
__init__()
(in
T_0
)
_abc_negative_cache_version
(in
OrderedResidueDict
)
_read_font_res()
(in
schrodinger.ui.widget.default
)
__init__()
(in
Temperature
)
_activate_hbar_mw()
(in
Table
)
_read_newxp_qsar_file()
(in
FitNewxpReorgEnergy
)
__init__()
(in
Test
)
_activate_vbar_mw()
(in
Table
)
_read_scheme_rules()
(in
schrodinger.structutils.color
)
__init__()
(in
V
)
_add_bond_entry()
(in
schrodinger.structutils.assignbondorders
)
_read_yaml_file()
(in
schrodinger.application.moldescriptors
)
__init__()
(in
Analysis
)
_add_cluster_statistics()
(in
schrodinger.application.canvas.clustergui
)
_readAgain()
(in
JobControlJob
)
__init__()
(in
AnalysisJob
)
_add_elements_method
(in
_FEPIOOtherBlock
)
_readClusterStatistics()
(in
CanvasFingerprintCluster
)
__init__()
(in
AssignForcefield
)
_add_elements_method
(in
_FFIOOtherBlock
)
_readDumpFile()
(in
App
)
__init__()
(in
BuildGeometry
)
_add_elements_method()
(in
_OtherBlock
)
_readDXYZFile()
(in
Hypothesis
)
__init__()
(in
Concluder
)
_add_extension_if_necessary()
(in
schrodinger.ui.qt.filedialog
)
_readFromPath()
(in
Hypothesis
)
__init__()
(in
DesmondJob
)
_add_script_arg()
(in
Startup
)
_readFromZipFile()
(in
Hypothesis
)
__init__()
(in
Extern
)
_add_tag_impl()
(in
Sea
)
_readGroupFile()
(in
CanvasFingerprintCluster
)
__init__()
(in
Structure
)
_addBlock()
(in
XpDesReader
)
_readMaskFile()
(in
Hypothesis
)
__init__()
(in
FepAnalysis
)
_addBond()
(in
schrodinger.structure
)
_readMessageFromDriver()
(in
Stage
)
__init__()
(in
FepJob
)
_addCCap()
(in
CapTermini
)
_readXYZFile()
(in
Hypothesis
)
__init__()
(in
FepVrun
)
_addNCap()
(in
CapTermini
)
_ref_frag_cmd()
(in
_Pert
)
__init__()
(in
FepanaJob
)
_addUserOut()
(in
Pipeline
)
_reg_param_postcheck()
(in
StageBase
)
__init__()
(in
LambdaHopping
)
_addVariable()
(in
Pipeline
)
_reg_param_precheck()
(in
StageBase
)
__init__()
(in
McproSimulate
)
_adjustNJobs()
(in
Stage
)
_reInitialize()
(in
_JobInitializer
)
__init__()
(in
McproStageBase
)
_all_groups
(in
schrodinger.graphics3d.common
)
_release_event_handler()
(in
TextButton
)
__init__()
(in
McproSystemBuilder
)
_AllRowsIterator
(in
schrodinger.project
)
_release_tk_widget_grabs()
(in
schrodinger.maestro.maestro
)
__init__()
(in
MetadynamicsAnalysisJob
)
_alterUpdateDelay()
(in
JobDJ
)
_remove()
(in
schrodinger.job.app
)
__init__()
(in
Minimize
)
_analyse_model()
(in
InputGroup
)
_remove_file()
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
Multisim
)
_angle()
(in
_PBCMeasureMananger
)
_remove_tag_impl()
(in
Sea
)
__init__()
(in
Primer
)
_App
(in
schrodinger.application.desmond.fep_gui
)
_remove_tmpfiles()
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
ReplicaExchange
)
_append_st_file()
(in
schrodinger.application.macromodel.paraUtils
)
_removeColumn()
(in
WidgetTable
)
__init__()
(in
Reporter
)
_apply()
(in
Rotamers
)
_removeRow()
(in
WidgetTable
)
__init__()
(in
SeaJob
)
_apply_filter()
(in
GaussianFilter
)
_removeZeroOrderBonds()
(in
AslLigandSearcher
)
__init__()
(in
Simulate
)
_applyKeyword()
(in
GlideJob
)
_reorder()
(in
PairDict
)
__init__()
(in
SolvatePocket
)
_arg_converters
(in
schrodinger.infra.mmim
)
_repack_component()
(in
schroPmwWrapper
)
__init__()
(in
Stop
)
_arg_endpoints
(in
schrodinger.infra.mmim
)
_reposition()
(in
_ScrolledDouble
)
__init__()
(in
SystemBuilder
)
_arg_handlers
(in
schrodinger.infra.mmim
)
_repositionTable()
(in
WidgetTable
)
__init__()
(in
Task
)
_arg_names
(in
schrodinger.infra.mmim
)
_res_sizes
(in
schrodinger.structure
)
__init__()
(in
TimeSeriesAnalysisJob
)
_array2list()
(in
schrodinger.application.desmond.autopartition
)
_reset()
(in
AppFramework
)
__init__()
(in
Trajectory
)
_aslselect_atom()
(in
schrodinger.application.desmond.cms
)
_reset()
(in
JobInputFrame
)
__init__()
(in
Trim
)
_assign_templated_residue()
(in
schrodinger.structutils.assignbondorders
)
_reset()
(in
AppFramework
)
__init__()
(in
Vrun
)
_Atom
(in
schrodinger.application.desmond.fep_gui
)
_reset()
(in
JobInputFrame
)
__init__()
(in
WaterMap
)
_atom_rec
(in
schrodinger.application.ska
)
_reset_mutant()
(in
_LigMut
)
__init__()
(in
WaterMapAnaJob
)
_AtomBondContainer
(in
schrodinger.structure
)
_reset_mutant()
(in
_ProMut
)
__init__()
(in
WaterMapCluster
)
_AtomGroup
(in
schrodinger.application.desmond.gui
)
_reset_mutant()
(in
_RingMut
)
__init__()
(in
WaterMapPostAnalysis
)
_AtomIterator
(in
schrodinger.structure
)
_reset_mutant_impl()
(in
_ProMut
)
__init__()
(in
SystemBuilderInput
)
_atomNameWarning()
(in
_StructureAtom
)
_reset_mutation_cmd()
(in
_ProMut
)
__init__()
(in
DesmondBoxSize
)
_AtomSelection
_reset_tag_impl()
(in
Sea
)
__init__()
(in
DetectionError
)
_atomStyleWarning()
(in
_StructureAtom
)
_Residue
(in
schrodinger.structure
)
__init__()
(in
FormatError
)
_Attribute
(in
schrodinger.application.jaguar.output
)
_residue_atom_subset()
(in
schrodinger.structutils.assignbondorders
)
__init__()
(in
SysType
)
_attributes
(in
JaguarAtomicResults
)
_ResidueIterator
(in
schrodinger.structure
)
__init__()
(in
__metaclass__
)
_attributes
(in
JaguarOutput
)
_resizeOneRow()
(in
WidgetTable
)
__init__()
(in
UnknownAppError
)
_attributes
(in
JaguarResults
)
_resizeUnsizedColumns()
(in
WidgetTable
)
__init__()
(in
UnknownRuleError
)
_attributes
(in
QSiteOutput
)
_respond_to_subjob_host_change()
(in
_SdMasterjob
)
__init__()
(in
Table
)
_attributes
(in
QSiteResults
)
_restr_grp_selector()
(in
_AtomGroup
)
__init__()
(in
TableButton
)
_attrs
(in
FukuiIndices
)
_restr_grp_selector()
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
TableCheckbutton
)
_attrs
(in
Cut
)
_restrict_entryfield()
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
_ComboBox
)
_availableHost()
(in
JobDJ
)
_retrieveDflts()
(in
schroWidget
)
__init__()
(in
TableComboBox
)
_b2motion()
(in
MultiListbox
)
_retrievePmwDflts()
(in
schroPmwWrapper
)
__init__()
(in
TableEntry
)
_Backend
(in
schrodinger.application.desmond.meta
)
_retrieveTkDflts()
(in
schroPmwWrapper
)
__init__()
(in
_EntryField
)
_Backend
(in
schrodinger.job.jobcontrol
)
_Ring
(in
schrodinger.structure
)
__init__()
(in
TableEntryField
)
_backend_singleton
(in
schrodinger.application.desmond.meta
)
_RingEdgeIterator
(in
schrodinger.structure
)
__init__()
(in
TableLabel
)
_backend_singleton
(in
schrodinger.job.jobcontrol
)
_RingMut
(in
schrodinger.application.desmond.fep_gui
)
__init__()
(in
TableRadiobutton
)
_ball_atom()
(in
Workspace
)
_rmsd()
(in
FitNewxpReorgEnergy
)
__init__()
(in
_Spinbox
)
_ball_rat()
(in
_RingMut
)
_rmsd()
(in
ReorgFitting
)
__init__()
(in
TableSpinbox
)
_BaseAdvancedDialog
(in
schrodinger.application.desmond.gui
)
_rocker_recall()
(in
schrodinger.application.bioluminate.pml_menus
)
__init__()
(in
TableTextButton
)
_BaseGroup
(in
schrodinger.application.desmond.gui
)
_Rotamer
(in
schrodinger.protein.rotamers
)
__init__()
(in
TableTitle
)
_BaseWriter
(in
schrodinger.structure
)
_RotamerIterator
(in
schrodinger.protein.rotamers
)
__init__()
(in
TextButton
)
_blend
(in
ArrowCore
)
_Row
(in
schrodinger.ui.widgettable
)
__init__()
(in
_Index
)
_blend
(in
Box
)
_rsh_cmd()
(in
schrodinger.job.remote_command
)
__init__()
(in
_TableWidget
)
_blend
(in
Lines
)
_run()
(in
schrodinger.application.desmond.maestro
)
__init__()
(in
Counter
)
_blend
(in
Polygon
)
_run_cleanup()
(in
schrodinger.application.mopac
)
__init__()
(in
EntryRestrictor
)
_blend
(in
Polyhedron
)
_run_command()
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
TestSuite
)
_blend
(in
Quadrilateral
)
_run_locally()
(in
schrodinger.application.mopac
)
__init__()
(in
Ensemble
)
_blend
(in
SphereCore
)
_run_prime_job()
(in
schrodinger.application.prepwizard
)
__init__()
(in
EnsembleSelection
)
_block_names_method
(in
_FEPIOOtherBlockContainer
)
_run_subjobs()
(in
schrodinger.application.macromodel.paraUtils
)
__init__()
(in
AcceptorConstraint
)
_block_names_method
(in
_FFIOOtherBlockContainer
)
_run_under_job_control()
(in
schrodinger.ui.qt.appframework
)
__init__()
(in
Constraint
)
_block_names_method()
(in
_OtherBlockContainer
)
_s_click_cell()
(in
Table
)
__init__()
(in
ConstraintGroup
)
_Bool
(in
schrodinger.application.desmond.mdkey
)
_savePicToFile()
(in
Report2D
)
__init__()
(in
Dock
)
_boolean()
(in
schrodinger.application.desmond.mdkey
)
_scheme_dict
(in
schrodinger.structutils.color
)
__init__()
(in
DonorConstraint
)
_browse_cmd()
(in
_FileSelection
)
_scroll()
(in
MultiListbox
)
__init__()
(in
FeaturePattern
)
_btn_cmd()
(in
_Step
)
_scrollbarToggleCallback()
(in
WidgetTable
)
__init__()
(in
GlideJob
)
_btn_cmd()
(in
Guide
)
_scrollBothNow()
(in
_ScrolledDouble
)
__init__()
(in
Gridgen
)
_button2()
(in
MultiListbox
)
_ScrolledDouble
(in
schrodinger.ui.widgettable
)
__init__()
(in
HydrophobicConstraint
)
_button_event_handler()
(in
TextButton
)
_SdDetailFrame
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
MetalConstraint
)
_c_click_cell()
(in
Table
)
_SdIncorpFrame
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
NOEConstraint
)
_c_function_proxy()
(in
schrodinger.infra.mm
)
_SdJobFrame
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
PositionalConstraint
)
_calc_types
(in
schrodinger.application.jaguar.output
)
_SdMasterjob
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
PoseLibrary
)
_calc_vdw_lambda()
(in
schrodinger.application.desmond.mdkey
)
_SdSubjobFrame
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
liaison
)
_calcAverageResidue()
(in
RMSF
)
_sel_cmd()
(in
AtomGroupFrame
)
__init__()
(in
FitNewxpReorgEnergy
)
_calcEnergy()
(in
EnergyGroupAnalysis
)
_select()
(in
MultiListbox
)
__init__()
(in
ReorgFitting
)
_calcRotTran()
(in
Superimposer
)
_select()
(in
_Cell
)
__init__()
(in
Complex
)
_calcStsPerJob()
(in
Stage
)
_select()
(in
_Row
)
__init__()
(in
Complex
)
_calculate_alogp()
(in
schrodinger.application.moldescriptors
)
_selectAdd()
(in
Project
)
__init__()
(in
EnsembleLigand
)
_calculate_balaban_and_looping_centic()
(in
schrodinger.application.moldescriptors
)
_selectAll()
(in
Project
)
__init__()
(in
NewxpJobdata
)
_calculate_charge_term_matrix()
(in
schrodinger.application.moldescriptors
)
_selectByFunction()
(in
Project
)
__init__()
(in
XpDesReader
)
_calculate_field_effect()
(in
schrodinger.application.moldescriptors
)
_selectCmd()
(in
_ComboBox
)
__init__()
(in
XpDesWriter
)
_calculate_mopac_desc()
(in
schrodinger.application.moldescriptors
)
_SelectedRowsIterator
(in
schrodinger.project
)
__init__()
(in
_XpDesBlock
)
_calculate_mr()
(in
schrodinger.application.moldescriptors
)
_selectInvert()
(in
Project
)
__init__()
(in
InputConfig
)
_calculate_peoe()
(in
schrodinger.application.moldescriptors
)
_selectionChanged()
(in
ProjectOpenDialog
)
__init__()
(in
GenOptions
)
_calculate_qikprop_desc()
(in
schrodinger.application.moldescriptors
)
_selectNone()
(in
Project
)
__init__()
(in
JaguarInput
)
_calculate_sum_of_topological_distances()
(in
schrodinger.application.moldescriptors
)
_selectUnpost()
(in
_ComboBox
)
__init__()
(in
MmJag
)
_calculate_topo_desc()
(in
schrodinger.application.moldescriptors
)
_set()
(in
StageBase
)
__init__()
(in
BondCharge
)
_calculateAtomicSasaList()
(in
PropertyCalculator
)
_set_count_function
(in
MMIMArgList
)
__init__()
(in
Dipole
)
_calculateBoundingBox()
(in
ArrowCore
)
_set_csb()
(in
BuildGeometry
)
__init__()
(in
FukuiIndices
)
_calculateBoundingBox()
(in
Box
)
_set_csb()
(in
SystemBuilder
)
__init__()
(in
JaguarAtomicResults
)
_calculateBoundingBox()
(in
Lines
)
_set_detail()
(in
_App
)
__init__()
(in
JaguarOptions
)
_calculateBoundingBox()
(in
Polygon
)
_set_detail()
(in
GuiApp
)
__init__()
(in
JaguarOutput
)
_calculateBoundingBox()
(in
Polyhedron
)
_set_entry_bg()
(in
_Spinbox
)
__init__()
(in
JaguarResults
)
_calculateBoundingBox()
(in
Quadrilateral
)
_set_freezing_atommass()
(in
schrodinger.application.desmond.predict_remd_temp
)
__init__()
(in
NormalMode
)
_calculateBoundingBox()
(in
SphereCore
)
_set_height()
(in
Table
)
__init__()
(in
Orbital
)
_calculateEnergiesByResidue()
(in
PropertyCalculator
)
_set_iterator()
(in
StructureReader
)
__init__()
(in
ScfIteration
)
_callback
(in
schrodinger.application.mcpro.modelsystemwizard
)
_set_name_method
(in
_FEPIOOtherBlock
)
__init__()
(in
TextParser
)
_Callback
(in
schrodinger.maestro.maestro
)
_set_name_method
(in
_FFIOOtherBlock
)
__init__()
(in
ThermoCollection
)
_callbacks
(in
schrodinger.maestro.maestro
)
_set_name_method()
(in
_OtherBlock
)
__init__()
(in
ThermoProp
)
_callCommand()
(in
PropertySelectorMenu
)
_set_oxygen_orders()
(in
schrodinger.application.prepwizard
)
__init__()
(in
ZVariables
)
_canvas
(in
schrodinger.structutils.analyze
)
_set_permanency()
(in
Task
)
__init__()
(in
_Attribute
)
_canvas_license
(in
schrodinger.application.lid.ligand_interaction_diagram
)
_set_row_bg()
(in
Table
)
__init__()
(in
line_enumerate
)
_canvas_license
(in
schrodinger.structutils.analyze
)
_set_spd()
(in
SolvatePocket
)
__init__()
(in
Scan
)
_canvas_license
(in
schrodinger.structutils.smiles
)
_set_takefocus()
(in
_EntryField
)
__init__()
(in
GetLabelBBXAnnotator
)
_CCodeProfiler
(in
schrodinger.infra.mm
)
_set_tunnel()
(in
schrodinger.utils.urllib
)
__init__()
(in
LidAnnotator
)
_Cell
(in
schrodinger.ui.widgettable
)
_set_value_helper()
(in
List
)
__init__()
(in
SetCoordinateAnnotator
)
_cellClicked()
(in
WidgetTable
)
_set_value_helper()
(in
Map
)
__init__()
(in
FirstSecondaryStructure
)
_cellDrag()
(in
WidgetTable
)
_set_width()
(in
Table
)
__init__()
(in
IntervalTree
)
_cellHover()
(in
WidgetTable
)
_setAi()
(in
_FFAngle
)
__init__()
(in
IntervalTreeNode
)
_cellRelease()
(in
WidgetTable
)
_setAi()
(in
_FFBond
)
__init__()
(in
SecondSecondaryStructure
)
_cfg_key()
(in
Key
)
_setAi()
(in
_FFConstraint
)
__init__()
(in
LigandInteractionDiagram
)
_Chain
(in
schrodinger.structure
)
_setAi()
(in
_FFDihedral
)
__init__()
(in
UserChooseNothingException
)
_chain_fmt
(in
schrodinger.application.ska
)
_setAi()
(in
_FFExclusion
)
__init__()
(in
App
)
_change_ens()
(in
MdGroup
)
_setAi()
(in
_FFPair
)
__init__()
(in
ChooseLigandDialog
)
_change_temp()
(in
MdGroup
)
_setAi()
(in
_FFRestraint
)
__init__()
(in
ChooseLigandModel
)
_charges_string
(in
schrodinger.structutils.assignbondorders
)
_setAi()
(in
_FFVirtual
)
__init__()
(in
LegendDialog
)
_check_arg()
(in
Startup
)
_setAj()
(in
_FFAngle
)
__init__()
(in
SaveFileDialog
)
_check_atom()
(in
schrodinger.application.desmond.mdkey
)
_setAj()
(in
_FFBond
)
__init__()
(in
TwoDWidget
)
_check_atom()
(in
schrodinger.utils.sea
)
_setAj()
(in
_FFConstraint
)
__init__()
(in
ConfSearch
)
_check_btn_cmd()
(in
_FileSelection
)
_setAj()
(in
_FFDihedral
)
__init__()
(in
EmbraceConfSearch
)
_check_canvas_license()
(in
schrodinger.application.moldescriptors
)
_setAj()
(in
_FFExclusion
)
__init__()
(in
EmbraceMinimization
)
_check_cpu()
(in
McproSimulate
)
_setAj()
(in
_FFPair
)
__init__()
(in
EnergyListing
)
_check_format()
(in
schrodinger.structure
)
_setAj()
(in
_FFVirtual
)
__init__()
(in
Minimization
)
_check_hydrogen()
(in
schrodinger.application.mcpro.modelsystemwizard
)
_setAk()
(in
_FFAngle
)
__init__()
(in
Minta
)
_check_jobparam()
(in
StartDialog1
)
_setAk()
(in
_FFConstraint
)
__init__()
(in
RCE
)
_check_jobparam()
(in
StartDialog2
)
_setAk()
(in
_FFDihedral
)
__init__()
(in
_MacroModel
)
_check_list()
(in
schrodinger.application.desmond.mdkey
)
_setAk()
(in
_FFVirtual
)
__init__()
(in
CluUtil
)
_check_list()
(in
schrodinger.utils.sea
)
_setAl()
(in
_FFConstraint
)
__init__()
(in
ComUtil
)
_check_map()
(in
schrodinger.utils.sea
)
_setAl()
(in
_FFDihedral
)
__init__()
(in
ComUtilAppSci
)
_check_prot_zmat()
(in
_Import
)
_setAl()
(in
_FFVirtual
)
__init__()
(in
ComUtil_2010
)
_check_stage()
(in
Engine
)
_setAltXYZ()
(in
_StructureAtom
)
__init__()
(in
SbcUtil
)
_check_topol()
(in
_SdDetailFrame
)
_setAm()
(in
_FFConstraint
)
__init__()
(in
DrawDdgPanel
)
_check_validity()
(in
GuiApp
)
_setAm()
(in
_FFVirtual
)
__init__()
(in
DrawFepPanel
)
_checkMessaging()
(in
JobDJ
)
_setAn()
(in
_FFVirtual
)
__init__()
(in
Guide
)
_checkSizeArgs()
(in
PolyhedronCore
)
_setAslExpr()
(in
_AtomSelection
)
__init__()
(in
DrawLrmPanel
)
_checkSmartDistribution()
(in
JobDJ
)
_setAtomChain()
(in
_StructureAtom
)
__init__()
(in
DrawMcPanel
)
_checkSubmitted()
(in
JobDJ
)
_setAtomColor()
(in
_StructureAtom
)
__init__()
(in
DrawMiniPanel
)
_checkVertexArgument()
(in
Box
)
_setAtomElement()
(in
_StructureAtom
)
__init__()
(in
CtObj
)
_checkVertexArgument()
(in
Lines
)
_setAtomFormalCharge()
(in
_StructureAtom
)
__init__()
(in
ModelSystem
)
_checkVertexArgument()
(in
Polygon
)
_setAtomicNumber()
(in
_StructureAtom
)
__init__()
(in
ModelSystemPanel
)
_checkVertexArgument()
(in
Quadrilateral
)
_setAtomLabelColor()
(in
_StructureAtom
)
__init__()
(in
_ChopCap
)
_ChopCap
(in
schrodinger.application.mcpro.modelsystemwizard
)
_setAtomLabelFormat()
(in
_StructureAtom
)
__init__()
(in
_DispOpt
)
_cleanup()
(in
Job
)
_setAtomLabelUserText()
(in
_StructureAtom
)
__init__()
(in
_FileSelection
)
_cleanup_component()
(in
schroPmwWrapper
)
_setAtomName()
(in
_StructureAtom
)
__init__()
(in
_Flex
)
_cleanup_external()
(in
schrodinger.application.mopac
)
_setAtomNameWarning()
(in
_StructureAtom
)
__init__()
(in
_Import
)
_clearSelection()
(in
WidgetTable
)
_setAtomPartialCharge()
(in
_StructureAtom
)
__init__()
(in
_Monitor
)
_click_cell()
(in
Table
)
_setAtomProperty()
(in
_StructureAtom
)
__init__()
(in
_Neut
)
_clicked()
(in
PickAtomToggle
)
_setAtomSecondaryStructure()
(in
_StructureAtom
)
__init__()
(in
_SysSpec
)
_clicked()
(in
PickBondToggle
)
_setAtomSolvationCharge()
(in
_StructureAtom
)
__init__()
(in
PertID
)
_clicked()
(in
_Cell
)
_setAtomStyle()
(in
_StructureAtom
)
__init__()
(in
PertReorder
)
_clicked()
(in
_Row
)
_setAtomTemperatureFactor()
(in
_StructureAtom
)
__init__()
(in
Perturbations
)
_clock_rollover_correction
(in
IncrementalTimer
)
_setAtomType()
(in
_StructureAtom
)
__init__()
(in
ImportSumfile
)
_cmp()
(in
DsuList
)
_setAtomVisible()
(in
_StructureAtom
)
__init__()
(in
ResidueTools
)
_collect_inputfile_from_file_list()
(in
schrodinger.application.desmond.cmj
)
_setAttributes()
(in
Job
)
__init__()
(in
DrawSolventPanel
)
_collect_inputfile_from_file_map()
(in
schrodinger.application.desmond.cmj
)
_setB()
(in
MaestroSphere
)
__init__()
(in
WriteInputs
)
_collect_inputfile_from_list()
(in
schrodinger.application.desmond.cmj
)
_setBondProperty()
(in
_StructureBond
)
__init__()
(in
Zmat
)
_collect_inputfile_from_map()
(in
schrodinger.application.desmond.cmj
)
_setBoolean
(in
_FEPIOElementProperty
)
__init__()
(in
ZmatAddAng
)
_color_index_to_name
(in
schrodinger.structutils.color
)
_setBoolean
(in
_FFIOElementProperty
)
__init__()
(in
ZmatAddBnd
)
_color_index_to_rgb
(in
schrodinger.structutils.color
)
_setBoolean()
(in
_ElementProperty
)
__init__()
(in
ZmatAddDih
)
_color_key()
(in
schrodinger.application.bioluminate.pml_menus
)
_setButtonDefaults()
(in
AppFramework
)
__init__()
(in
ZmatAtom
)
_color_name_to_index
(in
schrodinger.structutils.color
)
_setButtonDefaults()
(in
AppFramework
)
__init__()
(in
ZmatBondAtomtypes
)
_Column
(in
schrodinger.ui.widgettable
)
_setC0()
(in
_FFDihedral
)
__init__()
(in
ZmatDomDef
)
_ComboBox
(in
TableComboBox
)
_setC1()
(in
_FFAngle
)
__init__()
(in
ZmatGeoVar
)
_command()
(in
Table
)
_setC1()
(in
_FFBond
)
__init__()
(in
ZmatHarCons
)
_command()
(in
PickAtomToggle
)
_setC1()
(in
_FFConstraint
)
__init__()
(in
ZmatNonBond
)
_command()
(in
PickBondToggle
)
_setC1()
(in
_FFDihedral
)
__init__()
(in
ZmatVarDih
)
_command()
(in
PickAtomToggle
)
_setC1()
(in
_FFPair
)
__init__()
(in
proteinHandler
)
_command()
(in
PickBondToggle
)
_setC1()
(in
_FFRestraint
)
__init__()
(in
MolecularDescriptorsOptions
)
_command1()
(in
_Spinbox
)
_setC1()
(in
_FFSite
)
__init__()
(in
MopacCalculation
)
_commit()
(in
Entry
)
_setC1()
(in
_FFVdwtype
)
__init__()
(in
MopacResults
)
_commit()
(in
Workspace
)
_setC1()
(in
_FFVirtual
)
__init__()
(in
Hypothesis
)
_compare_sts_by_lowest_residue()
(in
schrodinger.protein.captermini
)
_setC2()
(in
_FFAngle
)
__init__()
(in
_HypothesisFeature
)
_component_list
(in
schrodinger.trajectory.analyze_trajectories
)
_setC2()
(in
_FFBond
)
__init__()
(in
Prime
)
_compute_ssets()
(in
EnsembleSelection
)
_setC2()
(in
_FFConstraint
)
__init__()
(in
FixForPrime
)
_condense_atom_group()
(in
_AtomGroup
)
_setC2()
(in
_FFDihedral
)
__init__()
(in
Cut
)
_condense_atom_group()
(in
schrodinger.application.desmond.mdkey
)
_setC2()
(in
_FFPair
)
__init__()
(in
HydrogenCap
)
_config_bg()
(in
_ComboBox
)
_setC2()
(in
_FFRestraint
)
__init__()
(in
QMRegion
)
_config_bg()
(in
_EntryField
)
_setC2()
(in
_FFSite
)
__init__()
(in
QSiteInput
)
_controlWidgetClick()
(in
WidgetTable
)
_setC2()
(in
_FFVdwtype
)
__init__()
(in
_GenDict
)
_convert_blob_to_int_array()
(in
schrodinger.application.combiglide.corehop
)
_setC2()
(in
_FFVirtual
)
__init__()
(in
_MopacDict
)
_convert_to_bool()
(in
schrodinger.infra.mmim
)
_setC3()
(in
_FFConstraint
)
__init__()
(in
Report2D
)
_convert_to_bool_array()
(in
schrodinger.infra.mmim
)
_setC3()
(in
_FFDihedral
)
__init__()
(in
SkaData
)
_convert_to_float_array()
(in
schrodinger.infra.mmim
)
_setC3()
(in
_FFRestraint
)
__init__()
(in
VSWWriter
)
_convert_to_int_array()
(in
schrodinger.infra.mmim
)
_setC3()
(in
_FFVirtual
)
__init__()
(in
WaterMapInput
)
_convert_to_string_array()
(in
schrodinger.infra.mmim
)
_setC4()
(in
_FFConstraint
)
__init__()
(in
Arrow
)
_count()
(in
schrodinger.application.macromodel.tools
)
_setC4()
(in
_FFDihedral
)
__init__()
(in
ArrowCore
)
_count_bonds()
(in
schrodinger.application.prepwizard
)
_setC4()
(in
_FFVirtual
)
__init__()
(in
MaestroArrow
)
_count_occurances()
(in
SmartsCriterion
)
_setC5()
(in
_FFConstraint
)
__init__()
(in
Box
)
_create_atom_tag()
(in
Workspace
)
_setC5()
(in
_FFDihedral
)
__init__()
(in
Group
)
_create_job()
(in
FepVrun
)
_setC5()
(in
_FFVirtual
)
__init__()
(in
Primitive
)
_create_job()
(in
Simulate
)
_setC6()
(in
_FFConstraint
)
__init__()
(in
Lines
)
_create_job()
(in
Task
)
_setC6()
(in
_FFDihedral
)
__init__()
(in
Polygon
)
_create_param_when_needed
(in
schrodinger.application.desmond.cmj
)
_setC6()
(in
_FFVirtual
)
__init__()
(in
Cube
)
_create_simulation()
(in
schrodinger.trajectory.desmondsimulation
)
_setChain()
(in
_Residue
)
__init__()
(in
Dodecahedron
)
_create_when_needed
(in
schrodinger.application.desmond.config
)
_setChainName()
(in
_Chain
)
__init__()
(in
Icosahedron
)
_create_when_needed
(in
schrodinger.application.desmond.envir
)
_setCharge()
(in
_FFSite
)
__init__()
(in
Octahedron
)
_createAngleMapContainer()
(in
_FEPIO
)
_setCollapsed()
(in
EntryGroup
)
__init__()
(in
Polyhedron
)
_createAtomContainer()
(in
Structure
)
_setCombiningRule()
(in
_FFIO
)
__init__()
(in
PolyhedronCore
)
_createAtomMapContainer()
(in
_FEPIO
)
_setContextMenus()
(in
SimplifiedSequenceViewer
)
__init__()
(in
Tetrahedron
)
_createBondContainer()
(in
Structure
)
_setCounterpoise()
(in
JaguarInput
)
__init__()
(in
Quadrilateral
)
_createBondMapContainer()
(in
_FEPIO
)
_setDeletionPenalty()
(in
StructAlign
)
__init__()
(in
MaestroSphere
)
_createByAtomProperty()
(in
Consensus
)
_setdir()
(in
schrodinger.ui.widget.tkinterwidget
)
__init__()
(in
Sphere
)
_createCell()
(in
ButtonColumn
)
_setEntryInWorkspace()
(in
ProjectRow
)
__init__()
(in
SphereCore
)
_createCell()
(in
CanvasColumn
)
_setEntryIsDeletable()
(in
ProjectRow
)
__init__()
(in
License
)
_createCell()
(in
CheckbuttonColumn
)
_setEntryIsReadOnly()
(in
ProjectRow
)
__init__()
(in
LicensePtr
)
_createCell()
(in
EntryFieldColumn
)
_setEntryIsSelected()
(in
ProjectRow
)
__init__()
(in
MmException
)
_createCell()
(in
LabelColumn
)
_setFinalStructure()
(in
MopacResults
)
__init__()
(in
ReturnCode
)
_createCell()
(in
OptionMenuColumn
)
_setFromStyle()
(in
_StructureBond
)
__init__()
(in
_CCodeProfiler
)
_createCell()
(in
RadiobuttonColumn
)
_setFunct()
(in
_FFAngle
)
__init__()
(in
_Wrapper
)
_createCell()
(in
_Column
)
_setFunct()
(in
_FFBond
)
__init__()
(in
Bitset
)
_createDihedMapContainer()
(in
_FEPIO
)
_setFunct()
(in
_FFConstraint
)
__init__()
(in
ErrorHandler
)
_createExclMapContainer()
(in
_FEPIO
)
_setFunct()
(in
_FFDihedral
)
__init__()
(in
MMIMArgList
)
_createFEPIOBlock()
(in
FFIOStructure
)
_setFunct()
(in
_FFPair
)
__init__()
(in
MMIMDict
)
_createFFIOAngleContainer()
(in
_FFIO
)
_setFunct()
(in
_FFRestraint
)
__init__()
(in
Initializer
)
_createFFIOAngleFBHWContainer()
(in
_FFIO
)
_setFunct()
(in
_FFVdwtype
)
__init__()
(in
mmlist
)
_createFFIOBlock()
(in
FFIOStructure
)
_setFunct()
(in
_FFVirtual
)
__init__()
(in
MmObject
)
_createFFIOBondContainer()
(in
_FFIO
)
_setG()
(in
MaestroSphere
)
__init__()
(in
Table
)
_createFFIOConstraintContainer()
(in
_FFIO
)
_setGapPenalty()
(in
StructAlign
)
__init__()
(in
TableRow
)
_createFFIODihedralContainer()
(in
_FFIO
)
_setGrowName()
(in
_StructureAtom
)
__init__()
(in
CreateWhenNeeded
)
_createFFIOExclusionContainer()
(in
_FFIO
)
_setHostPool()
(in
StageJob
)
__init__()
(in
App
)
_createFFIOImproperFBHWContainer()
(in
_FFIO
)
_setI1()
(in
_FFDihedral
)
__init__()
(in
HuntCache
)
_createFFIOOtherBlockContainer()
(in
_FFIO
)
_setId()
(in
Hypothesis
)
__init__()
(in
Host
)
_createFFIOPairContainer()
(in
_FFIO
)
_setIndex()
(in
_FFVirtual
)
__init__()
(in
Job
)
_createFFIOPosFBHWContainer()
(in
_FFIO
)
_setIndexMap()
(in
Consensus
)
__init__()
(in
_Backend
)
_createFFIOPseudoContainer()
(in
_FFIO
)
_setInPlaceRMSD()
(in
SiteMatchLookup
)
__init__()
(in
_JobInitializer
)
_createFFIORestraintContainer()
(in
_FFIO
)
_setInscode()
(in
_Residue
)
__init__()
(in
_JobManager
)
_createFFIOStretchFBHWContainer()
(in
_FFIO
)
_setInscode()
(in
_StructureAtom
)
__init__()
(in
_JobResourceHolder
)
_createFFIOVdwtypeContainer()
(in
_FFIO
)
_setInt
(in
_FEPIOElementProperty
)
__init__()
(in
Launcher
)
_createFFIOVdwtypescombinedContainer()
(in
_FFIO
)
_setInt
(in
_FFIOElementProperty
)
__init__()
(in
BaseJob
)
_createFFIOVirtualContainer()
(in
_FFIO
)
_setInt()
(in
_ElementProperty
)
__init__()
(in
JobControlJob
)
_createJobDir()
(in
Refiner
)
_setJobName()
(in
QSiteInput
)
__init__()
(in
JobDJ
)
_createMenuItem()
(in
AppFramework
)
_setLineWidth()
(in
Box
)
__init__()
(in
LinkedList
)
_createMenuItem()
(in
AppFramework
)
_setManageHandle()
(in
Structure
)
__init__()
(in
LinkedListNode
)
_createOtherBlockContainer()
(in
_FEPIO
)
_setManualUpdate()
(in
Structure
)
__init__()
(in
LocalhostJob
)
_createPairMapContainer()
(in
_FEPIO
)
_setMass()
(in
_FFSite
)
__init__()
(in
RunningJobs
)
_createProxy()
(in
_FEPIO
)
_setMaterial()
(in
MaestroSphere
)
__init__()
(in
SubprocessJob
)
_createProxy()
(in
_FFIO
)
_setMaxEfValue()
(in
Calculator
)
__init__()
(in
ThreadedJob
)
_createProxy()
(in
Structure
)
_setMinimumLength()
(in
StructAlign
)
__init__()
(in
_MultiJobFinalizer
)
_createSiteContainer()
(in
_FFIO
)
_setMinimumSimilarity()
(in
StructAlign
)
__init__()
(in
CommandError
)
_createStructureChainIterator()
(in
Structure
)
_setMinTcTotalActives()
(in
Calculator
)
__init__()
(in
MaestroCommand
)
_createStructureMoleculeIterator()
(in
Structure
)
_setName()
(in
_FEPIO
)
__init__()
(in
_Callback
)
_createStructureRingIterator()
(in
Structure
)
_setName()
(in
_FFIO
)
__init__()
(in
property_dict
)
_createTempFile()
(in
CanvasFingerprintCluster
)
_setName()
(in
_OtherBlock
)
__init__()
(in
LinearWriter
)
_createTempStructFile()
(in
PropertyCalculator
)
_setName()
(in
JaguarInput
)
__init__()
(in
Writer
)
_createTitle()
(in
_Column
)
_setName()
(in
EntryGroup
)
__init__()
(in
Grid
)
_criteria
(in
schrodinger.utils.ligfilter
)
_setName()
(in
_FFVdwtype
)
__init__()
(in
PhaseDB
)
_ct
(in
Workspace
)
_setNameFile()
(in
JaguarInput
)
__init__()
(in
Structures
)
_ct_set_restrain()
(in
Cms
)
_setNormals()
(in
Polyhedron
)
__init__()
(in
Text
)
_ctypes_to_numpy
(in
ThreadingModel
)
_setOpacity()
(in
MaestroSphere
)
__init__()
(in
Pipeline
)
_cull
(in
ArrowCore
)
_setOrder()
(in
_StructureBond
)
__init__()
(in
StageJob
)
_cull
(in
Box
)
_setPdbname()
(in
_StructureAtom
)
__init__()
(in
BackwardsReader
)
_cull
(in
Polygon
)
_setPdbRes()
(in
_Residue
)
__init__()
(in
DotPrinter
)
_cull
(in
Polyhedron
)
_setPdbres()
(in
_StructureAtom
)
__init__()
(in
DotPrinter
)
_cull
(in
Quadrilateral
)
_setPickCategory()
(in
MaestroSphere
)
__init__()
(in
Stage
)
_cull
(in
SphereCore
)
_setPickID()
(in
MaestroSphere
)
__init__()
(in
StageInput
)
_current_application_panel_callback
(in
schrodinger.maestro.maestro
)
_setProperty()
(in
_FFAngle
)
__init__()
(in
StageOutput
)
_CustomIconProvider
(in
schrodinger.ui.qt.filedialog
)
_setProperty()
(in
_FFBond
)
__init__()
(in
CombineStage
)
_data_fmt
(in
schrodinger.application.ska
)
_setProperty()
(in
_FFConstraint
)
__init__()
(in
GenerateCovalentComplexesStage
)
_data_names_method
(in
_FEPIOElementProperty
)
_setProperty()
(in
_FFDihedral
)
__init__()
(in
ConvertStage
)
_data_names_method
(in
_FFIOElementProperty
)
_setProperty()
(in
_FFExclusion
)
__init__()
(in
ChargeFilterStage
)
_data_names_method()
(in
_ElementProperty
)
_setProperty()
(in
_FFPair
)
__init__()
(in
DrugLikeSplitStage
)
_dclick_cell()
(in
Table
)
_setProperty()
(in
_FFPseudo
)
__init__()
(in
GeneratePropsStage
)
_ddgSolvDep()
(in
DrawSolventPanel
)
_setProperty()
(in
_FFRestraint
)
__init__()
(in
LigFilterStage
)
_deactivate_mw()
(in
Table
)
_setProperty()
(in
_FFSite
)
__init__()
(in
MergeDuplicatesStage
)
_deball_lig()
(in
_RingMut
)
_setProperty()
(in
_FFVdwtype
)
__init__()
(in
SubSetStage
)
_debug
(in
Table
)
_setProperty()
(in
_FFVirtual
)
__init__()
(in
GenCodesStage
)
_debug
(in
Project
)
_setR()
(in
MaestroSphere
)
__init__()
(in
RestoreTitlesStage
)
_debug_print()
(in
schrodinger.application.desmond.mdkey
)
_setRadius()
(in
MaestroSphere
)
__init__()
(in
DockingStage
)
_debug_print()
(in
schrodinger.application.desmond.simulation_block_data
)
_setReal
(in
_FEPIOElementProperty
)
__init__()
(in
GlideSortStage
)
_debug_print()
(in
schrodinger.application.desmond.simulation_block_test
)
_setReal
(in
_FFIOElementProperty
)
__init__()
(in
GridgenStage
)
_debug_print()
(in
schrodinger.utils.sea
)
_setReal()
(in
_ElementProperty
)
__init__()
(in
MergeStage
)
_default_group_selector()
(in
_AtomGroup
)
_setResnum()
(in
_Residue
)
__init__()
(in
LigPrepStage
)
_default_group_selector()
(in
schrodinger.application.desmond.mdkey
)
_setResnum()
(in
_StructureAtom
)
__init__()
(in
PostLigPrepStage
)
_defaultSortFunc()
(in
CheckbuttonColumn
)
_setSelection()
(in
_AtomSelection
)
__init__()
(in
ConfSearchStage
)
_defaultSortFunc()
(in
LabelColumn
)
_setSiteName()
(in
_FFSite
)
__init__()
(in
SampleRingsStage
)
_defaultSortFunc()
(in
_Column
)
_setSmilesTitle()
(in
SmilesStructure
)
__init__()
(in
DBConfSitesStage
)
_defaultStructureProperties()
(in
JaguarOutput
)
_setStage()
(in
_FEPIO
)
__init__()
(in
DBExportStage
)
_definedAttrs()
(in
Cut
)
_setState()
(in
BaseJob
)
__init__()
(in
DBManageStage
)
_definition_fh
(in
schrodinger.utils.ligfilter
)
_setString
(in
_FEPIOElementProperty
)
__init__()
(in
MMGBSAStage
)
_definition_file_name
(in
schrodinger.utils.ligfilter
)
_setString
(in
_FFIOElementProperty
)
__init__()
(in
PrimeStage
)
_delete()
(in
MmJag
)
_setString()
(in
_ElementProperty
)
__init__()
(in
PullStage
)
_delete()
(in
Bitset
)
_setStructOut()
(in
Pipeline
)
__init__()
(in
QikPropStage
)
_delete()
(in
mmlist
)
_setStructure()
(in
ProjectRow
)
__init__()
(in
QSiteStage
)
_delete()
(in
Table
)
_setStructureProperty()
(in
Structure
)
__init__()
(in
RmsdStage
)
_delete()
(in
Project
)
_setStyle()
(in
QuickHelpButton
)
__init__()
(in
SemiEmpStage
)
_delete()
(in
_Cell
)
_setStyle()
(in
_StructureAtom
)
__init__()
(in
EmptyIterator
)
_delete_atom_tag()
(in
Workspace
)
_setStyleOld()
(in
_StructureBond
)
__init__()
(in
EntryGroup
)
_delete_element_method
(in
_FEPIOOtherBlock
)
_setSuperimposedRMSD()
(in
SiteMatchLookup
)
__init__()
(in
EntrySurface
)
_delete_element_method
(in
_FFIOOtherBlock
)
_setT1()
(in
_FFRestraint
)
__init__()
(in
Project
)
_delete_element_method()
(in
_OtherBlock
)
_setT2()
(in
_FFRestraint
)
__init__()
(in
ProjectRow
)
_delete_method()
(in
_FEPIOSubBlockContainer
)
_setT3()
(in
_FFRestraint
)
__init__()
(in
PropertyDictionary
)
_delete_method()
(in
_FFIOSubBlockContainer
)
_setTitle()
(in
Hypothesis
)
__init__()
(in
_AllRowsIterator
)
_deleteIfExists()
(in
CanvasFingerprintCluster
)
_setTitle()
(in
EntryGroup
)
__init__()
(in
_EntryGroupIterator
)
_deleteItems()
(in
_FEPIO
)
_setTitle()
(in
ProjectRow
)
__init__()
(in
_EntrySurfaceIterator
)
_deleteItems()
(in
_FFIO
)
_setTitle()
(in
Structure
)
__init__()
(in
_IncludedRowsIterator
)
_deselect()
(in
_Cell
)
_setToStyle()
(in
_StructureBond
)
__init__()
(in
_SelectedRowsIterator
)
_deselect()
(in
_Row
)
_setType()
(in
_FFSite
)
__init__()
(in
Report
)
_DesmondFrame
(in
schrodinger.trajectory.desmondsimulation
)
_setup()
(in
ActiveDatabaseDialog
)
__init__()
(in
data_set
)
_DesmondProt
(in
schrodinger.application.desmond.fep_gui
)
_setup()
(in
AntibodyNumberingToolBar
)
__init__()
(in
data_point
)
_destroy_tk_widgets()
(in
schrodinger.maestro.maestro
)
_setup_sidebar()
(in
schrodinger.ui.qt.filedialog
)
__init__()
(in
local_atom
)
_detect_systype()
(in
Task
)
_setupBottomButtons()
(in
AppFramework
)
__init__()
(in
local_protein
)
_determine_stereo_option()
(in
schrodinger.structutils.smiles
)
_setupBottomButtons()
(in
AppFramework
)
__init__()
(in
local_residue
)
_determineSearchColumns()
(in
EditableProxyModel
)
_setupConstraints()
(in
Dock
)
__init__()
(in
PropKaException
)
_diff()
(in
schrodinger.application.jaguar.output
)
_setupConstraints()
(in
Gridgen
)
__init__()
(in
ProtAssign
)
_diff_param()
(in
ReorgFitting
)
_setupTorCons()
(in
Dock
)
__init__()
(in
amide_changeable
)
_dihedral()
(in
_PBCMeasureMananger
)
_setUseScanningAlignment()
(in
StructAlign
)
__init__()
(in
amine_changeable
)
_disableFileSelect()
(in
JobInputFrame
)
_setValue()
(in
TableRow
)
__init__()
(in
carboxyl_changeable
)
_disect_struc()
(in
_LigMut
)
_setValue()
(in
ProjectRow
)
__init__()
(in
changeable
)
_disect_struc()
(in
_ProMut
)
_setvalue_wo_vcmd()
(in
_Spinbox
)
__init__()
(in
hbond_cluster
)
_disect_struc()
(in
_RingMut
)
_setVdwtype()
(in
_FFSite
)
__init__()
(in
histidine_changeable
)
_disect_struc_impl()
(in
_LigMut
)
_setVersion()
(in
_FFIO
)
__init__()
(in
rotatable_changeable
)
_disect_struc_impl()
(in
_ProMut
)
_setWidth()
(in
_Column
)
__init__()
(in
water_changeable
)
_disect_struc_impl()
(in
_RingMut
)
_setWindowLength()
(in
StructAlign
)
__init__()
(in
CapTermini
)
_dismiss_current_application_panel()
(in
schrodinger.maestro.maestro
)
_setX()
(in
MaestroSphere
)
__init__()
(in
AddNeighborGroups
)
_display
(in
ModelSystem
)
_setX()
(in
_StructureAtom
)
__init__()
(in
GroupByConnectivity
)
_displayInWorkspace()
(in
ConsensusToolBar
)
_setXCoord()
(in
_FFPseudo
)
__init__()
(in
Membrane_Model
)
_DispOpt
(in
schrodinger.application.mcpro.modelsystemwizard
)
_setXVel()
(in
_FFPseudo
)
__init__()
(in
Rotamers
)
_distance()
(in
_PBCMeasureMananger
)
_setXYZ()
(in
_StructureAtom
)
__init__()
(in
_Rotamer
)
_DistanceCell
_setY()
(in
MaestroSphere
)
__init__()
(in
_RotamerIterator
)
_do_cleanup()
(in
schrodinger.application.moldescriptors
)
_setY()
(in
_StructureAtom
)
__init__()
(in
Sequence
)
_do_rocking()
(in
schrodinger.application.bioluminate.pml_menus
)
_setYCoord()
(in
_FFPseudo
)
__init__()
(in
FormatReader
)
_doc
(in
_FFIO
)
_setYVel()
(in
_FFPseudo
)
__init__()
(in
MaestroReader
)
_doc
(in
Rotamers
)
_setZ()
(in
MaestroSphere
)
__init__()
(in
MaestroReaderWithPositions
)
_doc
(in
Structure
)
_setZ()
(in
_StructureAtom
)
__init__()
(in
MaestroTextReader
)
_doc
(in
TextualStructure
)
_setZCoord()
(in
_FFPseudo
)
__init__()
(in
MaestroWriter
)
_doc
(in
_StructureAtom
)
_setZVel()
(in
_FFPseudo
)
__init__()
(in
Mol2Reader
)
_docking_specs
(in
schrodinger.application.glide.glide
)
_shading_model
(in
ArrowCore
)
__init__()
(in
Mol2Writer
)
_draw()
(in
Arrow
)
_shading_model
(in
Box
)
__init__()
(in
PDBReader
)
_draw()
(in
MaestroArrow
)
_shading_model
(in
Polygon
)
__init__()
(in
PDBWriter
)
_draw()
(in
Box
)
_shading_model
(in
Polyhedron
)
__init__()
(in
PropertyName
)
_draw()
(in
Lines
)
_shading_model
(in
Quadrilateral
)
__init__()
(in
SDReader
)
_draw()
(in
Polygon
)
_shading_model
(in
SphereCore
)
__init__()
(in
SDWriter
)
_draw()
(in
Polyhedron
)
_shiftWidgetClick()
(in
WidgetTable
)
__init__()
(in
SmilesCsvReader
)
_draw()
(in
Quadrilateral
)
_should_ignore_invalid_row()
(in
RestraintsTab
)
__init__()
(in
SmilesCsvWriter
)
_draw()
(in
MaestroSphere
)
_show()
(in
_ProMut
)
__init__()
(in
SmilesReader
)
_draw()
(in
Sphere
)
_show()
(in
PoseLibrary
)
__init__()
(in
SmilesStructure
)
_draw_arrow_callback()
(in
schrodinger.application.desmond.maestro
)
_show_entry()
(in
Workspace
)
__init__()
(in
SmilesWriter
)
_drawCylinder()
(in
Arrow
)
_show_mutant()
(in
_LigMut
)
__init__()
(in
Structure
)
_dropdownBtnRelease()
(in
_ComboBox
)
_show_mutant()
(in
_ProMut
)
__init__()
(in
StructureReader
)
_dump_impl()
(in
Atom
)
_show_mutant()
(in
_RingMut
)
__init__()
(in
StructureWriter
)
_dump_impl()
(in
List
)
_show_mutant_impl()
(in
_LigMut
)
__init__()
(in
TextualStructure
)
_dump_impl()
(in
Map
)
_show_mutant_impl()
(in
_ProMut
)
__init__()
(in
UnsupportedOption
)
_dump_impl()
(in
Sea
)
_show_mutant_impl()
(in
_RingMut
)
__init__()
(in
UnsupportedOptionValue
)
_edgeST
(in
DOTTreeGenerator
)
_show_only_entry()
(in
Workspace
)
__init__()
(in
_AtomBondContainer
)
_effect()
(in
StageBase
)
_showWarning()
(in
EntryField
)
__init__()
(in
_AtomIterator
)
_EINTR_RETRY
(in
schrodinger.job.util
)
_SIMPLE
(in
schrodinger.application.jaguar.output
)
__init__()
(in
_Chain
)
_Element
(in
schrodinger.application.desmond.ffiostructure
)
_Site
(in
_ProMut
)
__init__()
(in
_Molecule
)
_element_class
(in
_OtherBlock
)
_ska
(in
schrodinger.infra
)
__init__()
(in
_Residue
)
_ElementProperty
(in
schrodinger.application.desmond.ffiostructure
)
_slices
(in
schrodinger.graphics3d.arrow
)
__init__()
(in
_ResidueIterator
)
_enable_arrow()
(in
Guide
)
_smooth_line
(in
Lines
)
__init__()
(in
_Ring
)
_enableFileSelect()
(in
JobInputFrame
)
_smooth_point
(in
ArrowCore
)
__init__()
(in
_RingEdgeIterator
)
_encodeOriginalAtomNumbers()
(in
ConformerRmsdX
)
_smooth_point
(in
Box
)
__init__()
(in
_StructureAtom
)
_endOfFile()
(in
MultiFileReader
)
_smooth_point
(in
Lines
)
__init__()
(in
_StructureAtomContainer
)
_energy_attr_dict
(in
schrodinger.trajectory.analyze_trajectories
)
_smooth_point
(in
Polygon
)
__init__()
(in
_StructureAtomProperty
)
_enter_cmd()
(in
_EntryField
)
_smooth_point
(in
Polyhedron
)
__init__()
(in
_StructureBond
)
_enter_event_handler()
(in
TextButton
)
_smooth_point
(in
Quadrilateral
)
__init__()
(in
_StructureBondContainer
)
_entry_cmd()
(in
_FileSelection
)
_smooth_point
(in
SphereCore
)
__init__()
(in
_StructureBondProperty
)
_ENTRY_PREFIX
(in
ModelSystem
)
_sort()
(in
DsuList
)
__init__()
(in
_StructureChainIterator
)
_EntryField
(in
TableEntryField
)
_sort()
(in
MultiListbox
)
__init__()
(in
_StructureDeleter
)
_EntryField
(in
schrodinger.ui.qt.appframework
)
_sort_posre_helper()
(in
schrodinger.application.desmond.cms
)
__init__()
(in
_StructureManager
)
_EntryGroupIterator
(in
schrodinger.project
)
_sortCanvasCsv()
(in
Calculator
)
__init__()
(in
_StructureMoleculeIterator
)
_EntrySurfaceIterator
(in
schrodinger.project
)
_special_equiv
(in
Orbital
)
__init__()
(in
_StructureProperty
)
_equals()
(in
TreeWizard
)
_special_keys
(in
schrodinger.application.glide.glide
)
__init__()
(in
_StructureRingIterator
)
_err
(in
_Evalor
)
_Spinbox
(in
TableSpinbox
)
__init__()
(in
AslLigandSearcher
)
_err_break
(in
_Evalor
)
_split()
(in
Complex
)
__init__()
(in
Ligand
)
_error_dialog()
(in
schrodinger.application.mcpro.modelsystemwizard
)
_split_ct()
(in
schrodinger.application.desmond.predict_remd_temp
)
__init__()
(in
AssignBondOrders
)
_escape_dollar()
(in
schrodinger.utils.sea
)
_splitCanvasCsv()
(in
Calculator
)
__init__()
(in
Color
)
_escape_dollar2()
(in
schrodinger.utils.sea
)
_splitString()
(in
GenOptions
)
__init__()
(in
ColorScheme
)
_eval()
(in
schrodinger.application.desmond.mdkey
)
_stacks
(in
schrodinger.graphics3d.arrow
)
__init__()
(in
StructuralInteractionFingerprintGenerator
)
_eval()
(in
schrodinger.utils.sea
)
_start()
(in
JobDJ
)
__init__()
(in
CationPiInteraction
)
_Evalor
(in
schrodinger.application.desmond.mdkey
)
_start()
(in
AppFramework
)
__init__()
(in
Centroid
)
_Evalor
(in
schrodinger.utils.sea
)
_start()
(in
AppFramework
)
__init__()
(in
PiPiInteraction
)
_evaluateGaussian()
(in
Grid3D
)
_startJobs()
(in
JobDJ
)
__init__()
(in
MultiFileReader
)
_expandExcludes()
(in
Definition
)
_startup()
(in
App
)
__init__()
(in
MultiFileWriter
)
_expandIncludes()
(in
Definition
)
_status_messages
(in
schrodinger.job.queue
)
__init__()
(in
_DistanceCell
)
_export_to_csv()
(in
schrodinger.application.moldescriptors
)
_Step
(in
schrodinger.application.desmond.guide
)
__init__()
(in
Minimizer
)
_export_to_mae()
(in
schrodinger.application.moldescriptors
)
_stereo_enums
(in
schrodinger.structutils.smiles
)
__init__()
(in
ConformerRmsd
)
_external_re
(in
schrodinger.application.mopac
)
_store_input_geometry()
(in
schrodinger.application.jaguar.output
)
__init__()
(in
ConformerRmsdX
)
_extract_membrane()
(in
schrodinger.application.desmond.repair_cms
)
_str_()
(in
Key
)
__init__()
(in
BindingSiteAligner
)
_extract_solvent()
(in
schrodinger.application.desmond.repair_cms
)
_str_()
(in
List
)
__init__()
(in
SiteMatchLookup
)
_extractArguments()
(in
App
)
_strip_bracket()
(in
schrodinger.application.desmond.util
)
__init__()
(in
SmilesGenerator
)
_extractSuperimposeAslStructure()
(in
ConformerRmsdX
)
_strip_bracket()
(in
schrodinger.utils.sea
)
__init__()
(in
FilterReporter
)
_failure
(in
schrodinger.infra.mm
)
_strip_bracket2()
(in
schrodinger.utils.sea
)
__init__()
(in
SmilesErrorHandler
)
_fast_hunt()
(in
schrodinger.job.util
)
_STRIP_BRACKET_PATTERN
(in
schrodinger.utils.sea
)
__init__()
(in
DsuList
)
_FepFrame
(in
_FepTrajectory
)
_strip_procs()
(in
schrodinger.application.desmond.cwidget
)
__init__()
(in
StructureFileSorter
)
_FEPIO
(in
schrodinger.application.desmond.ffiostructure
)
_stripProcs()
(in
StartDialog
)
__init__()
(in
StructAlign
)
_FEPIOAngleMap
(in
schrodinger.application.desmond.ffiostructure
)
_stripProcs()
(in
StartDialog
)
__init__()
(in
Angle
)
_FEPIOAngleMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_structure_cache
(in
schrodinger.trajectory.desmondsimulation
)
__init__()
(in
AverageStructure
)
_FEPIOAtomMap
(in
schrodinger.application.desmond.ffiostructure
)
_structure_manager
(in
schrodinger.structure
)
__init__()
(in
CenterOfMass
)
_FEPIOAtomMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_StructureAtom
(in
schrodinger.structure
)
__init__()
(in
CenterOfMotion
)
_FEPIOBondMap
(in
schrodinger.application.desmond.ffiostructure
)
_StructureAtomContainer
(in
schrodinger.structure
)
__init__()
(in
CovarianceMatrix
)
_FEPIOBondMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_StructureAtomProperty
(in
schrodinger.structure
)
__init__()
(in
Dihedral
)
_FEPIODihedMap
(in
schrodinger.application.desmond.ffiostructure
)
_StructureBond
(in
schrodinger.structure
)
__init__()
(in
Distance
)
_FEPIODihedMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_StructureBondContainer
(in
schrodinger.structure
)
__init__()
(in
Grid3D
)
_FEPIOElement
(in
schrodinger.application.desmond.ffiostructure
)
_StructureBondProperty
(in
schrodinger.structure
)
__init__()
(in
HydrogenBondFinder
)
_FEPIOElementProperty
(in
schrodinger.application.desmond.ffiostructure
)
_StructureChainIterator
(in
schrodinger.structure
)
__init__()
(in
HydrogenBondTracker
)
_FEPIOExclMap
(in
schrodinger.application.desmond.ffiostructure
)
_StructureDeleter
(in
schrodinger.structure
)
__init__()
(in
PlanarAngle
)
_FEPIOExclMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_StructureManager
(in
schrodinger.structure
)
__init__()
(in
Position
)
_FEPIOOtherBlock
(in
schrodinger.application.desmond.ffiostructure
)
_StructureMoleculeIterator
(in
schrodinger.structure
)
__init__()
(in
RMSD
)
_FEPIOOtherBlockContainer
(in
schrodinger.application.desmond.ffiostructure
)
_StructureProperty
(in
schrodinger.structure
)
__init__()
(in
RMSF
)
_FEPIOPairMap
(in
schrodinger.application.desmond.ffiostructure
)
_StructureRingIterator
(in
schrodinger.structure
)
__init__()
(in
RadiusOfGyration
)
_FEPIOPairMapContainer
(in
schrodinger.application.desmond.ffiostructure
)
_style_sheet_read
(in
schrodinger.ui.qt.style
)
__init__()
(in
Ramachandran
)
_FEPIOProperty
(in
schrodinger.application.desmond.ffiostructure
)
_submit_job()
(in
_App
)
__init__()
(in
SecondaryStructure
)
_FEPIOSubBlock
(in
schrodinger.application.desmond.ffiostructure
)
_submit_job()
(in
GuiApp
)
__init__()
(in
Superimposer
)
_FEPIOSubBlockContainer
(in
schrodinger.application.desmond.ffiostructure
)
_submit_multisim_job()
(in
GuiApp
)
__init__()
(in
VolumeMapper
)
_FEPIOSubBlockMeta
(in
schrodinger.application.desmond.ffiostructure
)
_submitJobModeSpecific()
(in
DesmondApp
)
__init__()
(in
_PBCMeasureMananger
)
_FEPIOSubBlockProperty
(in
schrodinger.application.desmond.ffiostructure
)
_submitJobModeSpecific()
(in
McproApp
)
__init__()
(in
_RamachandranCallback
)
_FepSchedule
(in
schrodinger.application.desmond.config
)
_submitStage()
(in
Pipeline
)
__init__()
(in
AnalysisTool
)
_fepSolvDep()
(in
DrawSolventPanel
)
_sumSasaForAtoms()
(in
PropertyCalculator
)
__init__()
(in
_KeywordProcessor
)
_FepTrajectory
(in
schrodinger.trajectory.desmondsimulation
)
_superimpose()
(in
ConformerRmsdX
)
__init__()
(in
FrameAslSelection
)
_FFAngle
(in
schrodinger.trajectory.ffstructure
)
_swig_getattr()
(in
schrodinger.infra.licensing
)
__init__()
(in
FrameIndexSelection
)
_FFAngleIterator
(in
schrodinger.trajectory.ffstructure
)
_swig_setattr()
(in
schrodinger.infra.licensing
)
__init__()
(in
FrameSliceSelection
)
_FFAngleProperty
(in
schrodinger.trajectory.ffstructure
)
_synchronize_fsys_ct()
(in
Cms
)
__init__()
(in
_AtomSelection
)
_FFBond
(in
schrodinger.trajectory.ffstructure
)
_SysSpec
(in
schrodinger.application.mcpro.modelsystemwizard
)
__init__()
(in
CmsStructure
)
_FFBondIterator
(in
schrodinger.trajectory.ffstructure
)
_TableWidget
(in
schrodinger.application.desmond.table
)
__init__()
(in
DesmondSimulation
)
_FFBondProperty
(in
schrodinger.trajectory.ffstructure
)
_template_strings
(in
schrodinger.structutils.assignbondorders
)
__init__()
(in
FepSimulation
)
_FFConstraint
(in
schrodinger.trajectory.ffstructure
)
_temporarize_path()
(in
schrodinger.protein.getpdb
)
__init__()
(in
_DesmondFrame
)
_FFConstraintIterator
(in
schrodinger.trajectory.ffstructure
)
_test()
(in
schrodinger.application.desmond.table
)
__init__()
(in
_FepFrame
)
_FFConstraintProperty
(in
schrodinger.trajectory.ffstructure
)
_timestamp()
(in
schrodinger.application.macromodel.paraUtils
)
__init__()
(in
_FepTrajectory
)
_FFDihedral
(in
schrodinger.trajectory.ffstructure
)
_titleClick()
(in
WidgetTable
)
__init__()
(in
FFStructure
)
_FFDihedralIterator
(in
schrodinger.trajectory.ffstructure
)
_tk_widgets
(in
schrodinger.maestro.maestro
)
__init__()
(in
_FFAngle
)
_FFDihedralProperty
(in
schrodinger.trajectory.ffstructure
)
_toggleHorizScrollbar()
(in
_ScrolledDouble
)
__init__()
(in
_FFAngleIterator
)
_FFExclusion
(in
schrodinger.trajectory.ffstructure
)
_toggleVertScrollbar()
(in
_ScrolledDouble
)
__init__()
(in
_FFAngleProperty
)
_FFExclusionIterator
(in
schrodinger.trajectory.ffstructure
)
_toggleView()
(in
ConsensusToolBar
)
__init__()
(in
_FFBond
)
_FFExclusionProperty
(in
schrodinger.trajectory.ffstructure
)
_trace_log()
(in
schrodinger.infra.mm
)
__init__()
(in
_FFBondIterator
)
_FFIO
(in
schrodinger.application.desmond.ffiostructure
)
_trace_logging
(in
schrodinger.infra.mm
)
__init__()
(in
_FFBondProperty
)
_FFIOAngle
(in
schrodinger.application.desmond.ffiostructure
)
_translate_stereo_enum()
(in
schrodinger.structutils.smiles
)
__init__()
(in
_FFConstraint
)
_FFIOAngleContainer
(in
schrodinger.application.desmond.ffiostructure
)
_treat_arg()
(in
Startup
)
__init__()
(in
_FFConstraintIterator
)
_FFIOAngleFBHW
(in
schrodinger.application.desmond.ffiostructure
)
_treat_preference()
(in
Startup
)
__init__()
(in
_FFConstraintProperty
)
_FFIOAngleFBHWContainer
(in
schrodinger.application.desmond.ffiostructure
)
_treeST
(in
DOTTreeGenerator
)
__init__()
(in
_FFDihedral
)
_FFIOBond
(in
schrodinger.application.desmond.ffiostructure
)
_trolltop
(in
schrodinger.application.ska
)
__init__()
(in
_FFDihedralIterator
)
_FFIOBondContainer
(in
schrodinger.application.desmond.ffiostructure
)
_true_val
(in
schrodinger.application.ska
)
__init__()
(in
_FFDihedralProperty
)
_FFIOConstraint
(in
schrodinger.application.desmond.ffiostructure
)
_tryResizingColumn()
(in
WidgetTable
)
__init__()
(in
_FFExclusion
)
_FFIOConstraintContainer
(in
schrodinger.application.desmond.ffiostructure
)
_tunnel()
(in
schrodinger.utils.urllib
)
__init__()
(in
_FFExclusionIterator
)
_FFIODihedral
(in
schrodinger.application.desmond.ffiostructure
)
_unchecked_map
(in
_Evalor
)
__init__()
(in
_FFExclusionProperty
)
_FFIODihedralContainer
(in
schrodinger.application.desmond.ffiostructure
)
_undisplayInWorkspace()
(in
ConsensusToolBar
)
__init__()
(in
_FFPair
)
_FFIOElement
(in
schrodinger.application.desmond.ffiostructure
)
_unmap_event_handler()
(in
Table
)
__init__()
(in
_FFPairIterator
)
_FFIOElementProperty
(in
schrodinger.application.desmond.ffiostructure
)
_update_data()
(in
PickleJar
)
__init__()
(in
_FFPairProperty
)
_FFIOExclusion
(in
schrodinger.application.desmond.ffiostructure
)
_update_key()
(in
GuiApp
)
__init__()
(in
_FFPseudo
)
_FFIOExclusionContainer
(in
schrodinger.application.desmond.ffiostructure
)
_update_key_with_file()
(in
schrodinger.application.desmond.mdkey
)
__init__()
(in
_FFPseudoIterator
)
_FFIOImproperFBHW
(in
schrodinger.application.desmond.ffiostructure
)
_update_options()
(in
schrodinger.ui.widget.tkinterwidget
)
__init__()
(in
_FFPseudoProperty
)
_FFIOImproperFBHWContainer
(in
schrodinger.application.desmond.ffiostructure
)
_update_placement()
(in
schroPmwWrapper
)
__init__()
(in
_FFRestraint
)
_FFIOOtherBlock
(in
schrodinger.application.desmond.ffiostructure
)
_update_placement()
(in
schroWidget
)
__init__()
(in
_FFRestraintIterator
)
_FFIOOtherBlockContainer
(in
schrodinger.application.desmond.ffiostructure
)
_update_tk_widgets()
(in
schrodinger.maestro.maestro
)
__init__()
(in
_FFRestraintProperty
)
_FFIOPair
(in
schrodinger.application.desmond.ffiostructure
)
_updateCms()
(in
CmsStructure
)
__init__()
(in
_FFSite
)
_FFIOPairContainer
(in
schrodinger.application.desmond.ffiostructure
)
_updateRunningJobs()
(in
JobDJ
)
__init__()
(in
_FFSiteIterator
)
_FFIOPosFBHW
(in
schrodinger.application.desmond.ffiostructure
)
_updateSecondaryStructure()
(in
SecondaryStructure
)
__init__()
(in
_FFSiteProperty
)
_FFIOPosFBHWContainer
(in
schrodinger.application.desmond.ffiostructure
)
_updateStageStatus()
(in
Pipeline
)
__init__()
(in
_FFVdwtype
)
_FFIOProperty
(in
schrodinger.application.desmond.ffiostructure
)
_updateStageStatusRestarting()
(in
Pipeline
)
__init__()
(in
_FFVdwtypeIterator
)
_FFIOPseudo
(in
schrodinger.application.desmond.ffiostructure
)
_url_opener
(in
schrodinger.protein.getpdb
)
__init__()
(in
_FFVdwtypeProperty
)
_FFIOPseudoContainer
(in
schrodinger.application.desmond.ffiostructure
)
_val_filter()
(in
Key
)
__init__()
(in
_FFVirtual
)
_FFIORestraint
(in
schrodinger.application.desmond.ffiostructure
)
_val_filter()
(in
schrodinger.utils.sea
)
__init__()
(in
_FFVirtualIterator
)
_FFIORestraintContainer
(in
schrodinger.application.desmond.ffiostructure
)
_vcmd()
(in
_Spinbox
)
__init__()
(in
_FFVirtualProperty
)
_FFIOSite
(in
schrodinger.application.desmond.ffiostructure
)
_verify()
(in
CmsStructure
)
__init__()
(in
FrameLoader
)
_FFIOSiteContainer
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.analysis.enrichment
)
__init__()
(in
ModelBase
)
_FFIOStretchFBHW
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.application.bioluminate.protein
)
__init__()
(in
MultiprocessingModel
)
_FFIOStretchFBHWContainer
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.application.desmond.maestro
)
__init__()
(in
RMSDCalculator
)
_FFIOSubBlock
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.application.desmond.util
)
__init__()
(in
RMSDMultiprocessing
)
_FFIOSubBlockContainer
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.application.glide
)
__init__()
(in
RMSDThreading
)
_FFIOSubBlockMeta
(in
schrodinger.application.desmond.ffiostructure
)
_version
(in
schrodinger.application.glide.glideanalysis
)
__init__()
(in
ThreadingModel
)
_FFIOSubBlockProperty
(in
schrodinger.application.desmond.ffiostructure
)