Class Sequence

Class representing a sequence of protein residues.

Instance Methods

__init__(self, st, atoms)

_getAtomIterator(self)

_getResidueIterator(self)

getAtomList(self)
Return a list of atom indices in this sequence.

extractStructure(self, copy_props=False)
Return a new Structure containing only this sequence.

Properties

atom
Returns an atom iterator for all atoms in the sequence

residue
Returns residue iterator for all residues in the sequence

Method Details

Return a new Structure containing only this sequence. Structure properties, including the title, are inherited only if copy_props is set to True.

Property Details

Returns an atom iterator for all atoms in the sequence

Returns residue iterator for all residues in the sequence