Package schrodinger :: Module structure :: Class Mol2Reader

Class Mol2Reader

  object --+    
           |    
FormatReader --+
               |
              Mol2Reader

A class for reading structures from a mol2 format file.

Instance Methods

[hide private]

__init__(self, filename, index=1, error_handler=None)
Initialize the reader.

__del__(self)

close(self)
Close the file.

__iter__(self)

getErrorHandler(self)
Returns the error handler by querying the mmmmol2 library and if the refcount is > 0 then return the error handler that is in use by mmmol2.

next(self)
Return the next Structure object from the file.

Inherited from FormatReader: clearReadErrors, getReadErrors, startErrorQueuing, stopErrorQueuing

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, filename, index=1, error_handler=None)
(Constructor)

Initialize the reader.

Parameters:

filename (string) - The filename to read.
index (int) - The index of the first structure to read.
error_handler (int) - The handle of the mmerr object to use for error logging. Defaults to schrodinger.infra.mm.error_handler.

Overrides: object.__init__

getErrorHandler(self)

Returns the error handler by querying the mmmmol2 library and if the refcount is > 0 then return the error handler that is in use by mmmol2. Otherwise None is returned.

Overrides: FormatReader.getErrorHandler

Class Mol2Reader

__init__(self, filename, index=1, error_handler=None) (Constructor)

getErrorHandler(self)

init(self, filename, index=1, error_handler=None)
(Constructor)