Module pml_menus
Classes
ActionMenu
AddHydrogens
AntibodyPreset
Around
AroundExpandSubMenu
AsMenu
AtomContextMenu
AutoColorCarbons
AutoColorObjects
AutoColorSubMenu
AutoCycleCarbonColor
AutoCycleColor
BAndSPreset
BFactorPreset
Center
Clean
ColorAtomsByBFactor
ColorAtomsBySpectrum
ColorByElementSubMenu
ColorBySubstructure
ColorCalphasByBFactor
ColorCalphasBySpectrum
ColorCarbons
ColorCarbonsBySpectrum
ColorChainSubMenu
ColorChainbows
ColorChains
ColorChainsByCalpha
ColorChainsByCarbon
ColorChooserPanel
ColorHNOS
ColorHydrogens
ColorLabel
ColorMenu
ColorObject
ColorRecentCarbons
ColorRecentHydrogens
ColorRecentObjects
ColorRibbonMixin
ColorSpectrumSubMenu
ColorSubstructureSubMenu
CompleteSubMenu
ComputeSubMenu
ComputeSurfaceArea
CountAtoms
CreateEntry
CustomColor
CustomRecentColor
DefaultPreset
DeleteAll
DeleteAtoms
DeleteProject
DeleteSelections
DeleteWS
Disable
Duplicate
EntrySubMenu
ExcludeFromSelection
ExcludeInorganicFromSelection
ExcludeOrganicFromSelection
ExcludePolymerFromSelection
ExcludeSolventFromSelection
ExcludeSubMenu
ExcludeVisibleFromSelection
Expand
Extend
ExtendSubMenu
FakeMaestro
FindPCSubMenu
GenSelectionSubMenu
GenSymMatesSubMenu
GeneralContextSubMenu
GenerateInterfaceSelection
GenerateLigandSelection
GenerateSelection
GenerateSubMenu
GenerateSurfResSelection
GenerateSymmetryMates
HideAllOthers
HideAtoms
HideEverything
HideHydrogenSubMenu
HideHydrogens
HideLabel
HideMainChain
HideMenu
HideNonBonded
HidePolarHydrogens
HideRibbons
HideSideChain
HideSurface
HideSymmetryMates
HideWaters
HydrogenSubMenu
IncludeInSelection
IncludeSubMenu
IncludeVisibleInSelection
InterfaceMixin
InterfacePreset
InvertCompleteSelection
InvertSubMenu
LabelAtom
LabelAtomByEntryIndex
LabelAtomByMolIndex
LabelAtomByNumType
LabelAtomByOccupancy
LabelAtomByProp
LabelAtomByStereo
LabelAtomByVDW
LabelAtomIdentSubMenu
LabelChains
LabelMenu
LabelOtherSubMenu
LabelResidues
LigandActionMixin
LigandPreset
LigandSitesSubMenu
MAction
MWidgetAction
MakeProjectEntry
ModifySubMenu
ObjectFreeContextSubMenu
Orient
Origin
PMLContextMenu
PMLMenu
PolarContactsObject
PolarContactsOnlyMainchain
PolarContactsOnlySidechain
PolarContactsSubMenu
PolarContactsToAnyAtoms
PolarContactsToAnyNonSolvent
PolarContactsToEntry
PolarContactsToEntryWithoutSolvent
PolarContactsWithSidechains
PolarContactsWithSolvent
PolarContactsWithoutIntraMainchain
PolarContactsWithoutMainchain
PolarContactsWithoutSolvent
PresetAction
PresetSubMenu
PrettyPubPreset
Quit
Ray
RecentCarbonColorSubMenu
RecentColorSubMenu
RecentHydrogenColorSubMenu
RecentObjectColorSubMenu
RegionInfo
Reinitialize
RemoveHydrogens
RemovePC
RemoveWaters
Rename
RestrictSelection
RestrictSubMenu
RestrictToInorganic
RestrictToOrganic
RestrictToPolymer
RestrictToSolvent
RestrictToVisible
ResultsWindow
RockData
Select
SelectWithinAny
SelectWithinCalpha
SelectWithinChain
SelectWithinEntry
SelectWithinMolecule
SelectWithinResidue
SelectedAtomContextActionSubMenu
SelectedAtomContextMenu
SelectionSubMenu
ShowBAndS
ShowCartoon
ShowLabel
ShowLigandLines
ShowLigandSpheres
ShowLigandTubes
ShowLines
ShowMenu
ShowMesh
ShowNonBonded
ShowNonBondedSpheres
ShowOrganicMenu
ShowRibbon
ShowSpheres
ShowSubstructureMenu
ShowSurface
ShowTubes
SimplePreset
SpaceContextMenu
SubstructureContextSubMenu
SumFormalCharge
SumPartialCharge
SurfaceAreaSubMenu
SurfaceRender
TechnicalPreset
ToggleState
ToggleStateSubMenu
Zoom
Functions
add_common_context_items
atom_b_factor
bin_b_factors
clear_labels
color_atoms
color_atoms_rgb
color_by_element
color_chainbow_groups
create_action_menu
create_colorbyele_menu
create_hide_menu
create_label_menu
create_modify_menu
create_show_menu
create_show_organic_menu
create_show_substructure_menu
create_surface
display_atoms
display_atoms_as
display_image
display_ribbons
end_progress
ensure_proper_extension
find_all_entries
find_center_of_atoms
find_polar_contacts
get_asl_chain_name
get_color
get_matching_ws_atoms
get_matching_ws_entries
get_surfaces
get_visible_ws_asl
get_visible_ws_atoms
hide_atoms
hide_everything
hide_labels
hide_ribbons
hide_surface
join_asls
maestro_command
make_color_asl_for_element
mod_asl
restore_cursor
rock_workspace
save_new_color
set_wait_cursor
show_result
start_progress
stop_rocking
update_progress
Variables
ATOM_BALLNSTICK
ATOM_NONE
ATOM_RAINBOW_COLORS
ATOM_WIRE
BACKBONE
BLUE
BOND_BALLNSTICK
BOND_NONE
BOND_WIRE
CALPHA_SCHEME
CARBON_COLOR
CARTOON
CHAIN_SCHEME
CPK
CYAN
DARK_BLUE
DARK_GREEN
DAVE_DEBUG
DEEPRED
DEEPTEAL
DISULFIDE
GREEN
GREY
HOTPINK
HYDROGEN_COLOR
INORGANIC
LIGHTBLUE
LIME
MAESTRO_TO_STRUCT_STYLE
MAGENTA
MAX_RECENT_COLORS
MMCT_TO_MAESTRO_RIBBON_STYLE
NONE
OBJECT_COLOR
OLIVE
ORANGE
PARTIAL_CHARGE_4D
PINK
PML_PRESET_SURFACE
PML_SURFACE
POLYMER
POSITION_SCHEME
PROT_AND_DNA_SELE
PYMOL_COLOR_CYCLE
PYMOL_IONS
RED
RIBBON_RAINBOW_COLORS
RIBBON_STYLE
RT_COLOR_LABEL_END
RT_COLOR_LABEL_START
RT_TO_MAESTRO_COLORS
SEAFOAM
SIDECHAIN
SLATE
SOLVENT
SOLVENT_AND_IONS
SURFACE_AREA_CUTOFF
THIN_TRACE
TRIGGERED
TUBE
WATER
WHITE
YELLOW
YELLOWORANGE
__package__
color_dict
color_file
color_path
colorfile
colorpath
custom_color_dicts
line
maestro
mmshare_data
object_color_cycles
pref_dir
results_window
rgb
rock_data
toggle_table
tokens
[hide private]