Module config
Classes
DEFAULT_SETTING
_FepSchedule
_create_when_needed
Functions
__attach_msj
__calc_bonded_lambda
__calc_charge_lambda
__calc_vdw_lambda
__canonicalize_coulomb_method
__canonicalize_ensemble
__canonicalize_fep
__canonicalize_pressure
__canonicalize_temperature
__clean_cfg
__fix_cfg
__get_fep_schedule
__msj2cfg_helper
__optimize_cfg
__set_annealing
__set_backend
__set_checkpt
__set_convergence
__set_coulomb_method
__set_cpu
__set_cutoff_radius
__set_elapsed_time
__set_energy_group
__set_eneseq
__set_ensemble
__set_fep
__set_glue
__set_maeff_output
__set_max_steps
__set_meta
__set_model_file
__set_num_vector
__set_pressure
__set_randomize_velocity
__set_replica
__set_simbox
__set_steepest_descent_steps
__set_surface_tension
__set_taper
__set_temperature
__set_time
__set_timestep
__set_trajectory
__set_vrun_frameset
_xchk_check_annealing
_xchk_check_iwindow
_xchk_check_lambda
_xchk_check_remd_temp_generator
_xchk_check_remd_temp_generator2
add_plugin
canonicalize
extract_cfg
gen_replica
gen_temperature_for_solute_tempering
get_default_setting
get_energy_group_output_filename
get_ensemble_class_method
get_exec
get_exec_name
get_fep_lambda_schedule
get_fep_output_filename
get_homebox
get_replica_setting
get_simbox_output_filename
has_plugin
is_meta
is_minimize
is_remd
is_triclinic_box
is_vrun
lambda_type
msj2cfg
num_cpu
num_lambda_window
num_replica
optimize_key
parse_lambda
remove_plugin
tag_md
tag_meta
tag_minimize
tag_remd
tag_vrun
Variables
DEFAULT_CONFIG
MD
META
MINIMIZE
REMD
VRUN
__package__
cfg
model
msj
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