Index

A

atoms properties

B

bonds properties

C

Canvas, [1] API changelog Suite 2007 Suite 2008 Suite 2009 Suite 2010 Suite 2011 Suite 2012 ChmAtom (class in schrodinger.application.canvas.base) ChmBitComparable (class in schrodinger.application.canvas.base) ChmBitset (class in schrodinger.application.canvas.base) ChmBond (class in schrodinger.application.canvas.base) ChmClusterGrouper (class in schrodinger.application.canvas.base) ChmCustomOut32 (class in schrodinger.application.canvas.base) ChmDendriticOut32 (class in schrodinger.application.canvas.base) ChmFPIn32 (class in schrodinger.application.canvas.base) ChmFPMap32 (class in schrodinger.application.canvas.base) ChmFPOut32 (class in schrodinger.application.canvas.base) ChmHierarchicalClustering (class in schrodinger.application.canvas.base) ChmIterator (class in schrodinger.application.canvas.base) ChmLinearOut32 (class in schrodinger.application.canvas.base) ChmMatch (class in schrodinger.application.canvas.base)

ChmMmctAdaptor (class in schrodinger.application.canvas.base) ChmMol (class in schrodinger.application.canvas.base) ChmMolprint2D32 (class in schrodinger.application.canvas.base) ChmPairwiseFPIn (class in schrodinger.application.canvas.base) ChmPairwiseFPOut32 (class in schrodinger.application.canvas.base) ChmPairwiseOut32 (class in schrodinger.application.canvas.base) ChmQuery (class in schrodinger.application.canvas.base) ChmQueryMatcher (class in schrodinger.application.canvas.base) ChmRadialOut32 (class in schrodinger.application.canvas.base) ChmSDReader (class in schrodinger.application.canvas.base) ChmSMARTSOut32 (class in schrodinger.application.canvas.base) ChmSmilesFileReader (class in schrodinger.application.canvas.base) ChmSparseBitset (class in schrodinger.application.canvas.base) ChmToplogicalTorsionOut32 (class in schrodinger.application.canvas.base) ChmTripletOut32 (class in schrodinger.application.canvas.base)

D

Desmond

E

environment variable MAESTRO_SCRIPT_LOCATION PATH, [1] PYTHONPATH, [1], [2], [3], [4], [5], [6], [7] PYTHONSTARTUP PYTHONWARNINGS SCHRODINGER SCHRODINGER_PYTHONPATH, [1] SCHRODINGER_SCRIPTS, [1], [2]

G

Glide

I

installing modules

interactive prompt

J

Jaguar

job control

M

MacroModel Maestro callbacks commands project table, [1] running scripts script installation workspace, [1] MAESTRO_SCRIPT_LOCATION

MCPRO minimization modules accessing your own installing

P

PATH, [1] Prime project table Maestro, [1]

PYTHONPATH, [1], [2], [3], [4], [5], [6], [7] PYTHONSTARTUP PYTHONWARNINGS

Q

QSite

R

readline module

S

SCHRODINGER schrodinger.application.canvas.base (module) SCHRODINGER_PYTHONPATH, [1]

SCHRODINGER_SCRIPTS, [1], [2] structure adjustment creation i/o measurement minimization properties substructure searching superimposition

V

virtualenv

VSW

W

workspace Maestro

workspace, Maestro