The Schrödinger Boston User Meeting will be held at the Museum of Science on June 6-7, preceding the Structure-Based Drug Design conference.
As in past years, the Regional User Meetings offer a great opportunity to see current research from your colleagues and to learn about the latest developments from Schrödinger. This year's meeting will include an introduction to Suite 2011, user presentations, and hands-on workshops. The Boston meeting is two days and will involve more talks and workshops than the other venues.
Agenda
Monday, June 6
1:00 pm BioLuminate: A Preview of the Schrödinger Structure-Based Biologics Product
Dave Pearlman, BioLuminate Product Manager, Schrödinger
1:40 pm Protein–Protein Docking: Is the Glass Half Full or Half Empty?
Sandor Vajda, Professor, Biomedical Engineering, Boston University
2:30 pm Coffee Break
3:00 pm Free Energy Perturbation Applications to Ligand Selectivity, Potency, and
Effects of Mutations on Protein Structure
Soumya Ray, Assistant Professor of Neurology, Brigham and Women's Hospital
3:40 pm What is New in Suite 2011
Woody Sherman, Vice President of Applications Science, Schrödinger
4:30 pm Suite 2011 Demo
5:00 pm Reception at Schrödinger Office
Tuesday, June 7
9:30 am Small, Covalent Peptidomimetic Inhibitors of CRM1 Mediated Nuclear
Transport
Sharon Shechter, Head of Computational Discovery, Karyopharm
10:10 am Structure of Human O-GlcNAc Transferase-Substrate Complex and Insights
from Molecular Dynamics and Docking
Piotr Sliz, Assistant Professor, Harvard Medical School
10:50 am Coffee Break
11:20 am Core Hopping and R-Group Analysis
Peter Shenkin, Core Hopping Product Manager, Schrödinger
12:00 pm PyMOL: New Features and Demo
Jason Vertrees, PyMOL Product Manager, Schrödinger
12:30 pm Lunch
1:30 pm How Molecular Dynamics Simulation May be Applied in Structural Based
Design of Kinase Drugs
Yibing Shan, Senior Scientist, D.E. Shaw Research
2:10 pm Pathway and Mechanism of Drug Binding to G Protein-Coupled Receptors
Albert Pan, Research Scientist, D.E. Shaw Research
2:40 pm Coffee Break
3:10 pm Metadynamics: Applications to Conformational Analysis of Biologically and
Pharmaceutically Relevant Systems
Dima Lupyan, Senior Scientist, Schrödinger
3:50 pm A Brief Introduction to Seurat
James Baxendale, Vice President of Enterprise Informatics &
Seurat Product Manager, Schrödinger
4:00 pm Training, Demonstrations, and Discussion
-PyMOL with Jason Vertrees
-Seurat with James Baxendale
-R-group Analysis with Peter Shenkin
-Multiple Sequence Viewer with Piotr Rotkiewicz
-Maestro Elements with Kathryn Loving
-Maestro with Woody Sherman
-The Role of MD in Drug Discovery with Dima Lupyan, Albert Pan,
and Yibing Shan
Registration
This meeting is offered free of charge, but we ask that you register to reserve your space. To register, please submit this short online form.

