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Article ID: 1049 - Last Modified:

I would like to display the hydrophobic interactions between a ligand and protein. I tried to do this by only showing the good contacts in the Measurements panel (under Tools → Measurements → Contacts in the Maestro menu), but it required me to exclude polar atoms using an ASL expression. Is there an easier way to do this?

Yes, we have a script on the Script Center called for this task. The ligand and the protein are automatically detected and the polar atoms will be excluded from the display of good interactions.

Keywords: hydrophobic, contacts

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