Knowledge Base

Article ID: 106 - Last Modified: December 4, 2010

Is it possible to view trajectories from a replica exchange simulation?

Yes. At the end of the simulation, you will have a set of files for each replica

_replica#-out.cms
_replica#.idx
_replica#_trj/

Simply import the -out.cms file of the desired replica into Maestro, and view the trajectory with the Trajectory Viewer.

Keywords: replica exchange REMD trajectory Desmond, Maestro

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