Can I create a pose viewer file manually, by concatenating the Maestro files?

Yes, you can create a pose viewer file manually by concatenating the Maestro file for the receptor and the Maestro file for the ligands. The easiest way to do this is to use the structcat utility, which handles both compressed and uncompressed files. The receptor file must come first, and must contain only the receptor. Likewise, the ligands file must contain only the ligands.

Related Articles:

#190: Can I combine Maestro files or other structure files from the command line?
#286: How do I combine a receptor and a ligand from separate files into a file with a single entry for the complex?

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