Article ID: 122 - Last Modified: November 4, 2013
When I run Desmond or Jaguar jobs on a cluster with an Infiniband network, the jobs fail with the following in the log file:
libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
This will severely limit memory registrations.
How can I get around this?
The jobs are failing because of limits that set in your shell. Have a look at the OpenMPI FAQs #14 and #15 listed here:
Of particular importance is the fact that shell limits can be set in many places (limits.conf, PAM, even the resource manager daemons (e.g. SGE, LSF, etc.). Simply logging into a computer and testing the limits via 'ulimit -a' (or equivalent) may yield inaccurate results.
To truly test the shell limits in the environment of a cluster job, submit a simple batch script to the queue that prints out 'ulimit -a'.
#1481: My parallel Jaguar calculation failed with an "out of memory" error. What is the problem?
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