When I measure some distances on a frame of a Desmond trajectory, the distance marker (purple line) is plotted some distance away from the picked atoms, but parallel to where it should be. What is wrong and how can I fix this?

This is a known issue in Maestro 9.2 when using the Center Molecules option under Positioning in the Trajectory Viewer. The transformation due to centering is applied after the measurement is taken. The issue affects distance, angle, and dihedral measurements. As a workaround, using "Superimpose on frame" instead displays measurements correctly.

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