How do I change the representation of a structure in PyMOL that was transferred or imported from Maestro? The normal commands don't seem to work.

First, make sure that you are specifying the object name. For example, for the object maestro01:

set_bond stick_radius, 0.5, maestro01
set cartoon_color=red, maestro01

If this doesn't work, try putting parentheses around the object, e.g.

set cartoon_color=red, (maestro01)

Keywords: PyMOL4Maestro, PyMOL for Maestro

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