Article ID: 403 - Last Modified: December 4, 2010
Is there a script I could use that reports the results of structural alignment? Using the Atom Selection interface I can readily identify the residue number, but is there a command to do this, so I can write a script that outputs the corresponding residue numbers?
You could run Protein Structural Alignment from the command line:
$SCHRODINGER/utilities/structalign reference.pdb file1.pdb file2.pdb ...
The output is formatted to look like a sequence alignment, so you should be able to find corresponding residues numbers for all structures.
Keywords: structural alignment , structalign, Maestro
Type the words or phrases on which you would like to search, or click here to view a list of all
Knowledge Base articles