The installed Schrödinger software contains 'blast'. We would like to use this application but we need to know if this is NCBI or WUBLAST as we will need the appropriate databases for it.

It is the NCBI Blast.

There is a Schrödinger utility that makes it easy to download and install the Blast database for use with Prime:

$SCHRODINGER/utilities/update_BLASTDB

Run the script with '-h' to view usage and options.

Keywords: BLAST

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