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Article ID: 880 - Last Modified: December 4, 2010

When I build a model of a DNA/protein complex with Prime, the model has collisions between the protein side chains and the DNA. How do I fix this?

Once you have built a structure, it is recommended that you perform a refinement on the structure, using the Refinement panel. To eliminate the collisions with the side chains, choose "Predict side chains" from the Task option menu.

Keywords: DNA, protein, side chain, Prime

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