Where can I find instructions for installing PSIPRED for use with Prime?

Instructions for installing PSIPRED on Linux are given in the Installation Guide. Note that PSIPRED is not available for Windows. For Suite 2010, you must use version 2.61: later versions are incompatible.

Briefly, to install PSIPRED on Linux-x86:

1. Create the required directory:

mkdir -p $SCHRODINGER/thirdparty/bin/Linux-x86/psipred

or if you are using the SCHRODINGER_THIRDPARTY environment variable

mkdir -p $SCHRODINGER_THIRDPARTY/bin/Linux-x86/psipred

2. Download psipred261.tar.gz from the PSIPRED download site at http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/psipred261.tar.gz.

3. Unpack PSIPRED into the directory you created:

tar xzvf psipred261.tar.gz -C $SCHRODINGER/thirdparty/bin/Linux-x86/psipred

or

tar xzvf psipred261.tar.gz -C $SCHRODINGER_THIRDPARTY/bin/Linux-x86/psipred

Keywords: Prime, PSIPRED

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