Below are recently published papers highlighting applications using Schrödinger software:
Lyne, P. D.; Lamb, M. L.; Saeh, J. C., "Accurate Prediction of the Relative Potencies of Members of a Series of Kinase Inhibitors Using Molecular Docking and MM-GBSA Scoring", J. Med. Chem., 2006, 49, 4805-4808.
Cho, A. E.; Guallar, V.; Berne, B.; Friesner, R. A., "Importance of Accurate Charges in Molecular Docking: Quantum Mechanical/Molecular Mechanical (QM/MM) Approach", J. Comput. Chem., 2005, 26, 915-931.
Sherman, W.; Beard, H.S.; Farid, R., "Use of an Induced Fit Receptor Structure in Virtual Screening", Chem. Biol. & Drug Des., 2006, 67, 8384.
Maeda, K.; Das, D.; Ogata-Aoki, H.; Nakata, H.; Miyakawa, T.; Tojo, Y.; Norman, R.; Takaoka, Y.; Ding, J.; Arnold, G. F.; Arnold, E.; Mitsuya, H., "Structural and Molecular Interactions of CCR5 Inhibitors with CCR5", J. Biol. Chem., 2006, 281,12688-12698.
Farid, R.; Day, T.; Friesner, R. A.; Pearlstein, R. A., "New insights about HERG blockade obtained from protein modeling, potential energy mapping, and docking studies", Bioorg. & Med. Chem., 2006, 14, 3160-3173.