Below are selected publications from 2004; please check here to cite the use of Prime
- ö Yu, Z.; Jacobson, M. P.; Josovitz, J.; Rapp, C. S.; Friesner, R. A., "First-Shell Solvation of Ion Pairs: Correction of Systematic Errors in Implicit Solvent Models," J. Phys. Chem. B., 2004, 108, 6643-6654
- ö Guallar, V.; Jacobson, M. P.; McDermott, A.; Friesner, R. A., "Computational Modeling of the Catalytic Reaction in Triosephosphate Isomerase," J. Mol. Biol., 2004, 337, 227-239
- ö Jacobson, M. P.; Pincus, D. L.; Rapp, C. S.; Day, T. J. F.; Honig, B.; Shaw, D. E.; Friesner, R. A., "A Hierarchical Approach to All-Atom Protein Loop Prediction," Proteins: Structure, Function and Bioinformatics, 2004, 55, 351-367
- ö indicates papers (co)authored by Schrödinger scientist(s).

