Below are selected publications from 2007; please check here to cite the use of Prime
- • Rossi, K. A.; Weigelt, C. A.; Nayeem, A.; Krystek, S. R., "Loopholes and missing links in protein modeling," Protein Sci., 2007, 16, 1999-2012
- • Song, L.; Kalyanaraman, C.; Federov, A. A.; Federov, E. V.; Glasner, M. E.; Brown, S.; Babbitt, P. C.; Almo, S. C.; Jacobson, M. P.; Gerlt, J. A., "Prediction and assignment of function for a divergent N-succinyl amino acid racemase," Nature Chemical Biology, 2007, 3, 486-491
- • ö Zhu, K.; Shirts, M. R.; Friesner, R. A.; Jacobson, M. P., "Multiscale Optimization of a Truncated Newton Minimizer and Application to Proteins and Protein-Ligand Complexes," J. Chem. Theory Comput., 2007, 3, 640-648
- • ö Li, X.; Jacobson, M. P.; Zhu, K.; Zhao, S.; Friesner, R. A., "Assignment of Polar States for Protein Amino Acid Residues Using an Interaction Cluster Decomposition Algorithm and its Application to High Resolution Protein Structure Modeling," Proteins: Structure, Function, and Bioinformatics, 2007, 66, 824-837
- • Rummey, C.; Metz, G., "Homology models of dipeptidyl peptidases 8 and 9 with a focus on loop predictions near the active site," Proteins: Structure, Function, and Bioinformatics, 2007, 66, 160-171
- • ö Zhu, K.; Shirts, M. R.; and Friesner, R. A., "Improved Methods for Side Chain and Loop Predictions via the Protein Local Optimization Program: Variable Dielectric Model for Implicitly Improving the Treatment of Polarization Effects," J. Chem. Theory Comput., 2007, 3, 2108-2119
- ö indicates papers (co)authored by Schrödinger scientist(s).