Below are selected publications from 2006; please check here to cite the use of PIPER
- Kozakov, D.; Brenke, R.; Comeau, S.R.; Vajda, S., "PIPER: An FFT-based protein docking program with pairwise potentials," Proteins, 2006, 65, 392-406
- ö indicates papers (co)authored by Schrödinger scientist(s).

