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Docking-and-scoring_hero White Paper Life Science
Stories from drug discovery: Dialing out off-target liabilities with protein residue mutation FEP+ in an active drug discovery project Case Study Life Science
An expedited gene-to-drug approach using thermo scientific cryo-em and the Schrödinger platform Case Study Life Science
Limited Experimental Data? No Problem: Machine Learning and Physics in Preclinical Drug Discovery Webinar Life Science
  • Aug 31, 2021
Limited Experimental Data? No Problem: Machine Learning and Physics in Preclinical Drug Discovery

In this webinar, we provide three practical examples of the application of machine learning in active drug discovery programs.

Introducing a new in silico workflow for efficient and automated macrocycle design White Paper Life Science
Improving Protein-Ligand Modeling into Cryo-EM Data and the use of those Models in Drug Discovery Efforts Webinar Life Science
  • Feb 23, 2021
Improving Protein-Ligand Modeling into Cryo-EM Data and the use of those Models in Drug Discovery Efforts

Producing an accurate atomic model of protein-ligand interactions from the data generated by cryo-electron microscopy is often a challenging problem due to a combination of the noise in the experiment and the dynamic nature of protein-ligand binding.

Amplify discovery across vast chemical space Webinar Life Science
  • Jul 13, 2020
Active Learning Glide – Screen Billions of Compounds Efficiently and Cost Effectively

In this webinar, we illustrate how using an Active Learning approach combined with Glide enables cost effective and accurate screening of billion compound libraries.

Enzymes by Design: Structure-based Methods for Modeling Enzymes Webinar Life Science
  • Jul 8, 2020
Enzymes by Design: Structure-based Methods for Modeling Enzymes

An overview of how the Schrödinger technology can be used to optimize enzymes using structure-based rational design.

Generative Glide: AI-driven ultra-large virtual screening for real-world drug discovery Webinar Life Science
  • Jun 4th-11th, 2026
Generative Glide: AI-driven ultra-large virtual screening for real-world drug discovery

Join us as we go beyond slides and run a demo of the workflow, showing how Generative Glide performs in practice from setup through results.

  • Publication
  • Dec 3, 2025
Glide WS: Methodology and Initial Assessment of Performance for Docking Accuracy and Virtual Screening

Friesner, et al. Journal of Chemical Theory and Computation, 2025, 21(24), 12696–12708

Learning Path: T Cell Receptor Engineering

A structured overview of tools and workflows for T Cell receptor engineering.

  • Tutorial
Enzyme Engineering with BioLuminate

Investigate the effect of mutations in an alkene reductase from the OYE family on enzyme stability and ligand binding.

Events

17th Global Drug Delivery & Formulation Summit Event Life Science Materials Science
  • May 20, 2026
17th Global Drug Delivery & Formulation Summit

Schrödinger is excited to be participating in the 17th Global Drug Delivery & Formulation Summit taking place on May 18th – 20th in Berlin, Germany.

24th Schrödinger European User Group Meeting 2026  Event Life Science
  • May 19th-21st, 2026
24th Schrödinger European User Group Meeting 2026 

This year’s UGM event will feature an engaging mix of scientific presentations, hands-on workshops, and a panel discussion spanning the full scope of Schrödinger’s life science molecular design platform.

Suppliers’ Day 2026 Event Materials Science
  • May 20, 2026
Suppliers’ Day 2026

Schrödinger is excited to be participating in the Supplier’s Day 2026 conference taking place on May 19th – 20th in New York, New York.

Webinars

Biologics modeling for wet lab scientists: Detecting and deprioritizing dead ends before they reach the bench Webinar Life Science
  • May 27th – Jun 3rd, 2026
Biologics modeling for wet lab scientists: Detecting and deprioritizing dead ends before they reach the bench

Join us to learn how to detect and deprioritize high-risk candidates, effectively discarding developability dead-ends before they ever reach the bench.

Embracing a new era of toxicity screening: Atomic-resolution modeling to mitigate off-target liabilities Webinar Life Science
  • May 28, 2026
Embracing a new era of toxicity screening: Atomic-resolution modeling to mitigate off-target liabilities

Join us for a technical overview of Schrödinger’s Predictive Toxicology solution. This session will demonstrate how physics-based, atomic-resolution modeling transforms toxicology from a reactive “filter” into a proactive “design tool.”

Generative Glide: AI-driven ultra-large virtual screening for real-world drug discovery Webinar Life Science
  • Jun 4th-11th, 2026
Generative Glide: AI-driven ultra-large virtual screening for real-world drug discovery

Join us as we go beyond slides and run a demo of the workflow, showing how Generative Glide performs in practice from setup through results.

Documentation

  • Documentation
Learning Path: Oligonucleotide Modeling

A structured overview of tools and workflows for nucleic acids in drug discovery.

  • Documentation
WaterMap

Efficiently converged MD simulations are run with explicit water molecules, and resultant trajectories are analyzed to cluster hydration sites.

  • Documentation
SiteMap

Identify binding sites, including allosteric binding sites and protein-protein interfaces, and evaluate their druggability.

Tutorials

  • Tutorial
Structure-Based Virtual Screening using Glide

Prepare receptor grids for docking, dock molecules and examine the docked poses.

  • Tutorial
Ligand Binding Pose Generation for FEP+

Generate starting poses for FEP simulations for a series of BACE1 inhibitors using core constrained docking.

  • Tutorial
Homology Modeling of Protein-Ligand Binding Sites with IFD-MD

Create a homology model of TYK2 from JAK3 and including a bound ligand. Compare this model with the crystal structure for TYK2 bound to 4GIH.

Training Videos

Getting Going with Maestro BioLuminate Video Life Science
Getting Going with Maestro BioLuminate

A free video series introducing the basics of using Maestro Bioluminate.

Getting Going with Maestro Video Life Science
Getting Going with Maestro

A free video series introducing the basics of using Maestro.

  • Video
Introducing Ligand Designer

An overview of the LigandDesigner workflow, Editing in 2D and 3D, using display options and overlays, and accessing the Admin Panel.

Publications

Case Studies

White Papers

FEP+ Pose Builder — maximizing utility and productivity in FEP simulations White Paper Life Science
  • Jan 29, 2026
FEP+ Pose Builder — maximizing utility and productivity in FEP simulations

FEP+ Pose Builder is a methodological advancement introduced as an integrated feature to drastically enhance accessibility, user-friendliness, and productivity within the FEP+ pipeline.

20 Years of Glide: A Legacy of Docking Innovation and the Next Frontier with Glide WS White Paper Life Science
  • Oct 29, 2024
20 Years of Glide: A Legacy of Docking Innovation and the Next Frontier with Glide WS

Glide has long set the gold standard for commercial molecular docking software due to its robust performance in both binding mode prediction and empirical scoring tasks, ease of use, and tight integration with Schrödinger’s Maestro interface and molecular discovery workflows.

QuickShape screening in the age of ultra-large libraries  White Paper Life Science

Quick Reference Sheets

  • Quick Reference Sheet
Force Field Builder

A one-page guide to calculate missing torsion parameters for ligands using the Force Field Builder panel.

  • Quick Reference Sheet
Ligand Interaction Diagram

A one-page guide to using the Ligand Interaction Diagram for examining ligand-receptor interactions.

  • Quick Reference Sheet
GlideMap

A one-page guide to using the GlideMap GUI for ligand placement guided by experimental density.

Latest insights from Extrapolations blog

With FEP+, “The Experiment is the Limit.”
With FEP+, “The Experiment is the Limit.”

Over the past century, small molecule drugs have represented the dominant modality in drug research, enabling medical breakthroughs that have saved countless lives.

Tackling Drug Solubility: AbbVie and Schrödinger Collaborate to Advance Accurate Prediction Methods (FEP)
Tackling Drug Solubility: AbbVie and Schrödinger Collaborate to Advance Accurate Prediction Methods

The complexity and size of drug candidates has grown in recent years as scientists pursue novel targets once considered undruggable.

Can AlphaFold Models be Used for Structure-Based Drug Design? A Perspective Two Years In Blog
Can AlphaFold Models be Used for Structure-Based Drug Design? A Perspective Two Years In

We recently sat down with Edward Miller, Senior Director of Protein Structure Modeling at Schrödinger, to discuss his experience using AlphaFold models for SBDD.

Training & Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

Free learning resources

Learn how to deploy the technology and best practices of Schrödinger software for your project success. Find training resources, tutorials, quick start guides, videos, and more.