Python Module Index

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schrodinger
    schrodinger.active_learning.al_driver
    schrodinger.active_learning.al_node
    schrodinger.active_learning.al_report
    schrodinger.active_learning.al_utils
    schrodinger.adapter
    schrodinger.analysis
    schrodinger.analysis.enrichment
    schrodinger.analysis.enrichment.calculator
    schrodinger.analysis.enrichment.enrichment_input
    schrodinger.analysis.enrichment.metrics
    schrodinger.analysis.enrichment.plotter
    schrodinger.analysis.reaction
    schrodinger.analysis.substructure
    schrodinger.analysis.transformations
    schrodinger.analysis.visanalysis
    schrodinger.analysis.visanalysis.vdaxis
    schrodinger.analysis.visanalysis.vdcoordinateframe
    schrodinger.analysis.visanalysis.vdexception
    schrodinger.analysis.visanalysis.volumedata
    schrodinger.analysis.visanalysis.volumedataio
    schrodinger.analysis.visanalysis.volumedatastructureutils
    schrodinger.analysis.visanalysis.volumedatautils
    schrodinger.application
    schrodinger.application.aacg
    schrodinger.application.aacg.utils
    schrodinger.application.bindingsite
    schrodinger.application.bindingsite.atomtyping
    schrodinger.application.bindingsite.cavutils
    schrodinger.application.bindingsite.common
    schrodinger.application.bindingsite.intfield
    schrodinger.application.bindingsite.schema
    schrodinger.application.bioluminate
    schrodinger.application.bioluminate.actions
    schrodinger.application.bioluminate.actions.configs
    schrodinger.application.bioluminate.actions.factory
    schrodinger.application.bioluminate.actions.icons
    schrodinger.application.bioluminate.actions.icons_rc
    schrodinger.application.bioluminate.antibody
    schrodinger.application.bioluminate.antibody.io.csv_reader
    schrodinger.application.bioluminate.antibody.search_results_table
    schrodinger.application.bioluminate.antibody.utils
    schrodinger.application.bioluminate.bwidgets
    schrodinger.application.bioluminate.escomp
    schrodinger.application.bioluminate.interaction_calculator
    schrodinger.application.bioluminate.patch_utils
    schrodinger.application.bioluminate.patch_utils.patch_finder
    schrodinger.application.bioluminate.patch_utils.pre_analyze
    schrodinger.application.bioluminate.patch_utils.settings
    schrodinger.application.bioluminate.propfilter
    schrodinger.application.bioluminate.propfilter_ui
    schrodinger.application.bioluminate.propka_parse
    schrodinger.application.bioluminate.protein
    schrodinger.application.bioluminate.protein_protein_docking_shared
    schrodinger.application.bioluminate.protein_report_widget
    schrodinger.application.bioluminate.protein_structure_quality_ui
    schrodinger.application.bioluminate.reactive_residues
    schrodinger.application.bioluminate.run_propka
    schrodinger.application.bioluminate.sliderchart
    schrodinger.application.bioluminate.ssv
    schrodinger.application.bioluminate.ssv.toolbars
    schrodinger.application.bioluminate.ssv.viewer
    schrodinger.application.bioluminate.surfcomp
    schrodinger.application.bioluminate.validate_imported_modules
    schrodinger.application.bioluminate.workspacelabeler
    schrodinger.application.canvas
    schrodinger.application.canvas.base
    schrodinger.application.canvas.cluster
    schrodinger.application.canvas.clustergui
    schrodinger.application.canvas.fingerprint
    schrodinger.application.canvas.fingerprintgui
    schrodinger.application.canvas.r_group
    schrodinger.application.canvas.r_group_dee
    schrodinger.application.canvas.similarity
    schrodinger.application.canvas.similaritygui
    schrodinger.application.canvas.topo_descriptors
    schrodinger.application.canvas.utils
    schrodinger.application.combiglide
    schrodinger.application.combiglide.connection_storage
    schrodinger.application.combiglide.corehop
    schrodinger.application.combiglide.utils
    schrodinger.application.combinatorial_diversity
    schrodinger.application.combinatorial_diversity.diversity_fingerprinter
    schrodinger.application.combinatorial_diversity.diversity_selector
    schrodinger.application.combinatorial_diversity.diversity_splitter
    schrodinger.application.combinatorial_diversity.driver_utils
    schrodinger.application.combinatorial_diversity.splitter_utils
    schrodinger.application.combinatorial_screen
    schrodinger.application.combinatorial_screen.combinatorial_screener
    schrodinger.application.combinatorial_screen.driver_utils
    schrodinger.application.combinatorial_screen.fingerprint_utils
    schrodinger.application.dendrogram.core_class
    schrodinger.application.dendrogram.gradientSelector
    schrodinger.application.dendrogram.proteinDendrogram
    schrodinger.application.dendrogram.randTestSet
    schrodinger.application.desmond
    schrodinger.application.desmond.antlr3
    schrodinger.application.desmond.antlr3.compat
    schrodinger.application.desmond.antlr3.constants
    schrodinger.application.desmond.antlr3.debug
    schrodinger.application.desmond.antlr3.dfa
    schrodinger.application.desmond.antlr3.exceptions
    schrodinger.application.desmond.antlr3.recognizers
    schrodinger.application.desmond.antlr3.streams
    schrodinger.application.desmond.antlr3.tokens
    schrodinger.application.desmond.antlr3.tree
    schrodinger.application.desmond.antlr3.treewizard
    schrodinger.application.desmond.arkdb
    schrodinger.application.desmond.automatic_analysis_generator
    schrodinger.application.desmond.autopartition
    schrodinger.application.desmond.bennett
    schrodinger.application.desmond.bld_def
    schrodinger.application.desmond.bld_ver
    schrodinger.application.desmond.cmdline
    schrodinger.application.desmond.cmj
    schrodinger.application.desmond.cms
    schrodinger.application.desmond.cns_io
    schrodinger.application.desmond.config
    schrodinger.application.desmond.constants
    schrodinger.application.desmond.correlation_tau
    schrodinger.application.desmond.cwidget
    schrodinger.application.desmond.deltaE
    schrodinger.application.desmond.depictor
    schrodinger.application.desmond.desmond_advanced_tab_ui
    schrodinger.application.desmond.enhanced_sampling
    schrodinger.application.desmond.enhanced_sampling.FcnTypes
    schrodinger.application.desmond.enhanced_sampling.mexpLexer
    schrodinger.application.desmond.enhanced_sampling.mexpParser
    schrodinger.application.desmond.enhsamp
    schrodinger.application.desmond.envir
    schrodinger.application.desmond.event_analysis
    schrodinger.application.desmond.event_analysis.pl_image_tools
    schrodinger.application.desmond.fep_dialog
    schrodinger.application.desmond.fep_edge_data
    schrodinger.application.desmond.fep_edge_data_classifier
    schrodinger.application.desmond.fep_edge_report_maker
    schrodinger.application.desmond.fep_mapping
    schrodinger.application.desmond.fep_net_charge
    schrodinger.application.desmond.fep_reporter
    schrodinger.application.desmond.fep_schedule
    schrodinger.application.desmond.fep_scholar_msj_generator
    schrodinger.application.desmond.fep_scholar_rules
    schrodinger.application.desmond.fep_scholar_util
    schrodinger.application.desmond.fep_struc
    schrodinger.application.desmond.fep_util
    schrodinger.application.desmond.fepana
    schrodinger.application.desmond.feputils
    schrodinger.application.desmond.ffiostructure
    schrodinger.application.desmond.frag_snap
    schrodinger.application.desmond.gaussian_filter
    schrodinger.application.desmond.gchart
    schrodinger.application.desmond.gcmc_utils
    schrodinger.application.desmond.gconfig
    schrodinger.application.desmond.gui
    schrodinger.application.desmond.image_generator
    schrodinger.application.desmond.input_group_ui
    schrodinger.application.desmond.launch_utils
    schrodinger.application.desmond.license
    schrodinger.application.desmond.maestro
    schrodinger.application.desmond.mapper_msj_generator
    schrodinger.application.desmond.measurement
    schrodinger.application.desmond.membrane_utils
    schrodinger.application.desmond.memory
    schrodinger.application.desmond.meta
    schrodinger.application.desmond.move_alchem_ions
    schrodinger.application.desmond.mplchart
    schrodinger.application.desmond.multisim
    schrodinger.application.desmond.multisim.parser
    schrodinger.application.desmond.multisimstartup
    schrodinger.application.desmond.mxmd.mxmd_cleanup
    schrodinger.application.desmond.mxmd.mxmd_system_builder
    schrodinger.application.desmond.new_fep_edge_data
    schrodinger.application.desmond.picklejar
    schrodinger.application.desmond.platforms
    schrodinger.application.desmond.predict_remd_temp
    schrodinger.application.desmond.queue
    schrodinger.application.desmond.r_group_asl
    schrodinger.application.desmond.remd
    schrodinger.application.desmond.repair_cms
    schrodinger.application.desmond.replica_dE
    schrodinger.application.desmond.replica_exchange_review
    schrodinger.application.desmond.replica_sid_generator
    schrodinger.application.desmond.report_helper
    schrodinger.application.desmond.rest_inp
    schrodinger.application.desmond.rest_tab_ui
    schrodinger.application.desmond.rl_helper
    schrodinger.application.desmond.simulation_block_data
    schrodinger.application.desmond.simulation_block_test
    schrodinger.application.desmond.smarts
    schrodinger.application.desmond.solubility_utils
    schrodinger.application.desmond.stage
    schrodinger.application.desmond.stage.analysis
    schrodinger.application.desmond.stage.app
    schrodinger.application.desmond.stage.app.absolute_binding
    schrodinger.application.desmond.stage.app.absolute_binding.restraint
    schrodinger.application.desmond.stage.app.absolute_binding.stage
    schrodinger.application.desmond.stage.app.absolute_binding.struc
    schrodinger.application.desmond.stage.app.constant_ph
    schrodinger.application.desmond.stage.app.fragment_linking
    schrodinger.application.desmond.stage.app.fragment_linking.stage
    schrodinger.application.desmond.stage.app.fragment_linking.utils
    schrodinger.application.desmond.stage.app.matsci
    schrodinger.application.desmond.stage.app.mxmd
    schrodinger.application.desmond.stage.app.solubility
    schrodinger.application.desmond.stage.app.watermap
    schrodinger.application.desmond.stage.deprecate
    schrodinger.application.desmond.stage.fep_mapper
    schrodinger.application.desmond.stage.jobs
    schrodinger.application.desmond.stage.launcher
    schrodinger.application.desmond.stage.prepare
    schrodinger.application.desmond.stage.prepare.forcefield
    schrodinger.application.desmond.stage.prepare.structure
    schrodinger.application.desmond.stage.run_method_parallel
    schrodinger.application.desmond.stage.simulate
    schrodinger.application.desmond.stage.utils
    schrodinger.application.desmond.stage.workflow
    schrodinger.application.desmond.starter
    schrodinger.application.desmond.starter.generator
    schrodinger.application.desmond.starter.generator.abfep
    schrodinger.application.desmond.starter.generator.common
    schrodinger.application.desmond.starter.generator.constant_ph
    schrodinger.application.desmond.starter.generator.fep_plus
    schrodinger.application.desmond.starter.generator.fep_solubility
    schrodinger.application.desmond.starter.generator.mxmd
    schrodinger.application.desmond.starter.starter
    schrodinger.application.desmond.starter.ui
    schrodinger.application.desmond.starter.ui.abfep
    schrodinger.application.desmond.starter.ui.cmdline
    schrodinger.application.desmond.starter.ui.constant_ph
    schrodinger.application.desmond.starter.ui.fep_plus
    schrodinger.application.desmond.starter.ui.fep_solubility
    schrodinger.application.desmond.starter.ui.mxmd
    schrodinger.application.desmond.struc
    schrodinger.application.desmond.system_builder_inp
    schrodinger.application.desmond.system_builder_util
    schrodinger.application.desmond.systype
    schrodinger.application.desmond.task
    schrodinger.application.desmond.torsion_related
    schrodinger.application.desmond.util
    schrodinger.application.fpsim
    schrodinger.application.glide
    schrodinger.application.glide.ensemble_selection
    schrodinger.application.glide.glide
    schrodinger.application.glide.glideanalysis
    schrodinger.application.glide.gui
    schrodinger.application.glide.http_client
    schrodinger.application.glide.http_server
    schrodinger.application.glide.ligand_designer
    schrodinger.application.glide.poseviewconvert
    schrodinger.application.glide.utils
    schrodinger.application.glide.xpdes
    schrodinger.application.hitexpander
    schrodinger.application.inputconfig
    schrodinger.application.jaguar
    schrodinger.application.jaguar.autots_bonding
    schrodinger.application.jaguar.autots_constants
    schrodinger.application.jaguar.autots_exceptions
    schrodinger.application.jaguar.autots_input
    schrodinger.application.jaguar.autots_input_constants
    schrodinger.application.jaguar.autots_keywords
    schrodinger.application.jaguar.autots_rmsd
    schrodinger.application.jaguar.autots_validation
    schrodinger.application.jaguar.basis
    schrodinger.application.jaguar.boltzmann_prop_defaults
    schrodinger.application.jaguar.check_headers
    schrodinger.application.jaguar.constants
    schrodinger.application.jaguar.exceptions
    schrodinger.application.jaguar.file_logger
    schrodinger.application.jaguar.global_macros
    schrodinger.application.jaguar.gui
    schrodinger.application.jaguar.gui.base_panel
    schrodinger.application.jaguar.gui.basis_selector
    schrodinger.application.jaguar.gui.edit_dialog
    schrodinger.application.jaguar.gui.filedialog
    schrodinger.application.jaguar.gui.input_tab_widgets
    schrodinger.application.jaguar.gui.input_tab_widgets_hb
    schrodinger.application.jaguar.gui.input_tab_widgets_pka
    schrodinger.application.jaguar.gui.solvent_selector
    schrodinger.application.jaguar.gui.tabs
    schrodinger.application.jaguar.gui.tabs.base_tab
    schrodinger.application.jaguar.gui.tabs.coordinates
    schrodinger.application.jaguar.gui.tabs.input_sub_tabs
    schrodinger.application.jaguar.gui.tabs.input_sub_tabs.base_sub_tab
    schrodinger.application.jaguar.gui.tabs.input_sub_tabs.basis_set
    schrodinger.application.jaguar.gui.tabs.input_sub_tabs.charge_constraints
    schrodinger.application.jaguar.gui.tabs.input_tab
    schrodinger.application.jaguar.gui.tabs.irc_tab
    schrodinger.application.jaguar.gui.tabs.molecule_tab
    schrodinger.application.jaguar.gui.tabs.multi_structure_tab
    schrodinger.application.jaguar.gui.tabs.optimization_tab
    schrodinger.application.jaguar.gui.tabs.output_tab
    schrodinger.application.jaguar.gui.tabs.properties_tab
    schrodinger.application.jaguar.gui.tabs.reaction_molecules_tab
    schrodinger.application.jaguar.gui.tabs.reaction_properties_tab
    schrodinger.application.jaguar.gui.tabs.reaction_tab
    schrodinger.application.jaguar.gui.tabs.scan_tab
    schrodinger.application.jaguar.gui.tabs.scf_tab
    schrodinger.application.jaguar.gui.tabs.solvation_tab
    schrodinger.application.jaguar.gui.tabs.sub_tab_widgets
    schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.base_widgets
    schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.basis_set_widgets
    schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_constraints_widgets
    schrodinger.application.jaguar.gui.tabs.sub_tab_widgets.charge_selector
    schrodinger.application.jaguar.gui.tabs.theory_tab
    schrodinger.application.jaguar.gui.tabs.transition_state_tab
    schrodinger.application.jaguar.gui.theory_selector
    schrodinger.application.jaguar.gui.theory_tab_widgets
    schrodinger.application.jaguar.gui.ui
    schrodinger.application.jaguar.gui.ui.config_dialog_jaguar_ui
    schrodinger.application.jaguar.gui.ui.coordinate_dialog_ui
    schrodinger.application.jaguar.gui.ui.define_smarts_panel_ui
    schrodinger.application.jaguar.gui.ui.edit_dialog_ui
    schrodinger.application.jaguar.gui.ui.excited_state_widget_ui
    schrodinger.application.jaguar.gui.ui.input_hb_bottom_ui
    schrodinger.application.jaguar.gui.ui.input_hb_top_ui
    schrodinger.application.jaguar.gui.ui.input_pka_bottom_ui
    schrodinger.application.jaguar.gui.ui.input_pka_top_ui
    schrodinger.application.jaguar.gui.ui.input_std_bottom_ui
    schrodinger.application.jaguar.gui.ui.input_sub_tabs
    schrodinger.application.jaguar.gui.ui.input_sub_tabs.basis_set_ui
    schrodinger.application.jaguar.gui.ui.input_sub_tabs.charge_constraints_ui
    schrodinger.application.jaguar.gui.ui.input_top_ui
    schrodinger.application.jaguar.gui.ui.irc_bottom_ui
    schrodinger.application.jaguar.gui.ui.irc_top_ui
    schrodinger.application.jaguar.gui.ui.molecule_pka_bottom_ui
    schrodinger.application.jaguar.gui.ui.molecule_std_bottom_ui
    schrodinger.application.jaguar.gui.ui.molecule_top_ui
    schrodinger.application.jaguar.gui.ui.multi_structures_ui
    schrodinger.application.jaguar.gui.ui.optimization_tab_ui
    schrodinger.application.jaguar.gui.ui.output_tab_ui
    schrodinger.application.jaguar.gui.ui.pka_smarts_page_ui
    schrodinger.application.jaguar.gui.ui.properties_tab_ui
    schrodinger.application.jaguar.gui.ui.reaction_molecules_tab_ui
    schrodinger.application.jaguar.gui.ui.reaction_properties_tab_ui
    schrodinger.application.jaguar.gui.ui.reaction_tab_ui
    schrodinger.application.jaguar.gui.ui.scan_tab_nextgeom_ui
    schrodinger.application.jaguar.gui.ui.scan_tab_ui
    schrodinger.application.jaguar.gui.ui.scf_tab_ui
    schrodinger.application.jaguar.gui.ui.solvent_pka_tab_ui
    schrodinger.application.jaguar.gui.ui.solvent_tab_ui
    schrodinger.application.jaguar.gui.ui.spin_treatment_widget_ui
    schrodinger.application.jaguar.gui.ui.theory_tab_ui
    schrodinger.application.jaguar.gui.ui.transition_state_bottom_ui
    schrodinger.application.jaguar.gui.ui.transition_state_top_ui
    schrodinger.application.jaguar.gui.utils
    schrodinger.application.jaguar.hydrokinetic_constants
    schrodinger.application.jaguar.hydrokinetic_input
    schrodinger.application.jaguar.hydrokinetic_input_constants
    schrodinger.application.jaguar.hydrokinetic_keywords
    schrodinger.application.jaguar.hydrokinetic_validation
    schrodinger.application.jaguar.input
    schrodinger.application.jaguar.jaguar_config_dialog
    schrodinger.application.jaguar.jaguar_diff
    schrodinger.application.jaguar.jaguar_keyword_utils
    schrodinger.application.jaguar.keywordDB
    schrodinger.application.jaguar.mmjag
    schrodinger.application.jaguar.neural_network_optimizer
    schrodinger.application.jaguar.output
    schrodinger.application.jaguar.results
    schrodinger.application.jaguar.scan
    schrodinger.application.jaguar.solvation_input
    schrodinger.application.jaguar.solvation_keywords
    schrodinger.application.jaguar.solvation_validation
    schrodinger.application.jaguar.textparser
    schrodinger.application.jaguar.user_config
    schrodinger.application.jaguar.utils
    schrodinger.application.jaguar.validation
    schrodinger.application.jaguar.workflow_input
    schrodinger.application.jaguar.workflow_keywords
    schrodinger.application.jaguar.workflow_validation
    schrodinger.application.job_monitor
    schrodinger.application.job_monitor.buttons
    schrodinger.application.job_monitor.diagnostics_dialog_ui
    schrodinger.application.job_monitor.file_browser_ui
    schrodinger.application.job_monitor.job_info_view_ui
    schrodinger.application.job_monitor.job_monitor_diagnostics_dialog
    schrodinger.application.job_monitor.job_monitor_file_browser
    schrodinger.application.job_monitor.job_monitor_gui
    schrodinger.application.job_monitor.job_monitor_icons_rc
    schrodinger.application.job_monitor.job_monitor_models
    schrodinger.application.job_monitor.job_monitor_progress_bar
    schrodinger.application.job_monitor.job_monitor_stylesheets
    schrodinger.application.job_monitor.job_monitor_table
    schrodinger.application.job_monitor.job_monitor_widgets
    schrodinger.application.job_monitor.top_level_view_ui
    schrodinger.application.job_monitor.util
    schrodinger.application.jobserver_cert_gui_dir.jobserver_cert_gui_icons_rc
    schrodinger.application.jobserver_cert_gui_dir.registration_dialogs
    schrodinger.application.jobserver_cert_gui_dir.registration_panel_ui
    schrodinger.application.licensing
    schrodinger.application.licensing.flexlm
    schrodinger.application.licensing.licadmin
    schrodinger.application.licensing.licerror
    schrodinger.application.licensing.lmgrd_log_parser
    schrodinger.application.licensing.netsuiteapi
    schrodinger.application.ligprep
    schrodinger.application.ligprep.ionizer
    schrodinger.application.livedesign
    schrodinger.application.livedesign.constants
    schrodinger.application.livedesign.data_classes
    schrodinger.application.livedesign.entry_types
    schrodinger.application.livedesign.export_map_manager
    schrodinger.application.livedesign.export_models
    schrodinger.application.livedesign.export_setup_ui
    schrodinger.application.livedesign.export_tasks
    schrodinger.application.livedesign.export_ui
    schrodinger.application.livedesign.icons_rc
    schrodinger.application.livedesign.import_utils
    schrodinger.application.livedesign.io_utils
    schrodinger.application.livedesign.job_utils
    schrodinger.application.livedesign.ld_base_classes
    schrodinger.application.livedesign.ld_export
    schrodinger.application.livedesign.ld_export_gui
    schrodinger.application.livedesign.ld_folder_tree
    schrodinger.application.livedesign.ld_import
    schrodinger.application.livedesign.ld_tasks
    schrodinger.application.livedesign.ld_utils
    schrodinger.application.livedesign.lid
    schrodinger.application.livedesign.live_report_widget
    schrodinger.application.livedesign.live_report_widget_ui
    schrodinger.application.livedesign.login
    schrodinger.application.livedesign.login2_ui
    schrodinger.application.livedesign.login_gui
    schrodinger.application.livedesign.login_gui2
    schrodinger.application.livedesign.login_ui
    schrodinger.application.livedesign.maestro_sync
    schrodinger.application.livedesign.panel_components
    schrodinger.application.livedesign.pose_name_panel
    schrodinger.application.livedesign.pose_name_panel_ui
    schrodinger.application.livedesign.save_mapping_dialog_ui
    schrodinger.application.livedesign.selection_pop_up_ui
    schrodinger.application.livedesign.summary
    schrodinger.application.livedesign.summary_ui
    schrodinger.application.livedesign.tasks
    schrodinger.application.livedesign.upload_utils
    schrodinger.application.macromodel
    schrodinger.application.macromodel.apps
    schrodinger.application.macromodel.input
    schrodinger.application.macromodel.paraUtils
    schrodinger.application.macromodel.tools
    schrodinger.application.macromodel.utils
    schrodinger.application.matsci
    schrodinger.application.matsci.amorphous
    schrodinger.application.matsci.anharmonic
    schrodinger.application.matsci.appbase
    schrodinger.application.matsci.aseutils
    schrodinger.application.matsci.atom_group
    schrodinger.application.matsci.atomicsymbols
    schrodinger.application.matsci.atomicsymbolsgui
    schrodinger.application.matsci.bandshape_utils
    schrodinger.application.matsci.basiselements
    schrodinger.application.matsci.boltzmann_avg_props
    schrodinger.application.matsci.buildcomplex
    schrodinger.application.matsci.buildcomplex2d
    schrodinger.application.matsci.builderwidgets
    schrodinger.application.matsci.cctbx
    schrodinger.application.matsci.cctbx.rot_mx
    schrodinger.application.matsci.cg_mapping
    schrodinger.application.matsci.cgforcefield
    schrodinger.application.matsci.cgforcefieldgui
    schrodinger.application.matsci.chargegui
    schrodinger.application.matsci.clusterstruct
    schrodinger.application.matsci.clusterstructgui
    schrodinger.application.matsci.coarsegrain
    schrodinger.application.matsci.codeutils
    schrodinger.application.matsci.colorutils
    schrodinger.application.matsci.configdlgs
    schrodinger.application.matsci.controlicons_rc
    schrodinger.application.matsci.desmondutils
    schrodinger.application.matsci.deswidgets
    schrodinger.application.matsci.elasticity
    schrodinger.application.matsci.elasticity.elastic
    schrodinger.application.matsci.elasticity.strain
    schrodinger.application.matsci.elasticity.stress
    schrodinger.application.matsci.elasticity.tensors
    schrodinger.application.matsci.elementalprops
    schrodinger.application.matsci.enc
    schrodinger.application.matsci.enumeration
    schrodinger.application.matsci.equilibrium_md
    schrodinger.application.matsci.espresso
    schrodinger.application.matsci.espresso.ppdb
    schrodinger.application.matsci.espresso.qeinput
    schrodinger.application.matsci.espresso.qeoutput
    schrodinger.application.matsci.espresso.utils
    schrodinger.application.matsci.etarotamers
    schrodinger.application.matsci.etatoggle
    schrodinger.application.matsci.fragments
    schrodinger.application.matsci.freevolume
    schrodinger.application.matsci.genetic_optimization
    schrodinger.application.matsci.geometry
    schrodinger.application.matsci.graph
    schrodinger.application.matsci.gsas
    schrodinger.application.matsci.gsas.atmdata
    schrodinger.application.matsci.gsas.ElementTable
    schrodinger.application.matsci.gsas.GSASIIElem
    schrodinger.application.matsci.gsas.GSASIIfiles
    schrodinger.application.matsci.gsas.GSASIIlattice
    schrodinger.application.matsci.gsas.GSASIImath
    schrodinger.application.matsci.gsas.GSASIIpwd
    schrodinger.application.matsci.gsas.GSASIIspc
    schrodinger.application.matsci.gutils
    schrodinger.application.matsci.hdfutils
    schrodinger.application.matsci.jaguar_multistage_workflow_utils
    schrodinger.application.matsci.jaguar_restart
    schrodinger.application.matsci.jaguarworkflows
    schrodinger.application.matsci.jagwidgets
    schrodinger.application.matsci.jobdirdlg
    schrodinger.application.matsci.jobutils
    schrodinger.application.matsci.jwsteps
    schrodinger.application.matsci.kmc
    schrodinger.application.matsci.kmcgui
    schrodinger.application.matsci.maestrocmds
    schrodinger.application.matsci.mecp_mod
    schrodinger.application.matsci.mlearn
    schrodinger.application.matsci.mlearn.base
    schrodinger.application.matsci.mlearn.features
    schrodinger.application.matsci.mlearn.sklearn_json
    schrodinger.application.matsci.mlearn.sklearn_json.classification
    schrodinger.application.matsci.mlearn.sklearn_json.common
    schrodinger.application.matsci.mlearn.sklearn_json.csr
    schrodinger.application.matsci.mlearn.sklearn_json.decomposition
    schrodinger.application.matsci.mlearn.sklearn_json.regression
    schrodinger.application.matsci.montecarlo
    schrodinger.application.matsci.msconst
    schrodinger.application.matsci.msprops
    schrodinger.application.matsci.mstest
    schrodinger.application.matsci.msutils
    schrodinger.application.matsci.mswidgets
    schrodinger.application.matsci.multiapp
    schrodinger.application.matsci.nano
    schrodinger.application.matsci.nano.check
    schrodinger.application.matsci.nano.constants
    schrodinger.application.matsci.nano.interface_mod
    schrodinger.application.matsci.nano.particle
    schrodinger.application.matsci.nano.plane
    schrodinger.application.matsci.nano.sheet
    schrodinger.application.matsci.nano.slab
    schrodinger.application.matsci.nano.space_groups
    schrodinger.application.matsci.nano.surfaces_interfaces_mod
    schrodinger.application.matsci.nano.tools
    schrodinger.application.matsci.nano.tube
    schrodinger.application.matsci.nano.util
    schrodinger.application.matsci.nano.xtal
    schrodinger.application.matsci.optoelectronics
    schrodinger.application.matsci.packmol
    schrodinger.application.matsci.parserutils
    schrodinger.application.matsci.pbcutils
    schrodinger.application.matsci.permittivity
    schrodinger.application.matsci.plotwidgets
    schrodinger.application.matsci.polymer
    schrodinger.application.matsci.property_names
    schrodinger.application.matsci.qb_sdk
    schrodinger.application.matsci.qb_sdk.api
    schrodinger.application.matsci.qb_sdk.client
    schrodinger.application.matsci.qb_sdk.job
    schrodinger.application.matsci.qb_sdk.parameters
    schrodinger.application.matsci.qb_sdk.tools
    schrodinger.application.matsci.qeschema
    schrodinger.application.matsci.qeschema.qeschema
    schrodinger.application.matsci.qeschema.qeschema.cards
    schrodinger.application.matsci.qeschema.qeschema.converters
    schrodinger.application.matsci.qeschema.qeschema.documents
    schrodinger.application.matsci.qeschema.qeschema.exceptions
    schrodinger.application.matsci.qeschema.qeschema.hdf5
    schrodinger.application.matsci.qeschema.qeschema.hdf5.charge
    schrodinger.application.matsci.qeschema.qeschema.hdf5.readutils
    schrodinger.application.matsci.qeschema.qeschema.namespaces
    schrodinger.application.matsci.qeschema.qeschema.options
    schrodinger.application.matsci.qeschema.qeschema.utils
    schrodinger.application.matsci.qeschema.scripts.xml2qeinput
    schrodinger.application.matsci.qeschema.scripts.yaml2qeinput
    schrodinger.application.matsci.qeschema.tests
    schrodinger.application.matsci.qeschema.utils
    schrodinger.application.matsci.qexsd
    schrodinger.application.matsci.qexsd.qespresso
    schrodinger.application.matsci.qexsd.qespresso.cards
    schrodinger.application.matsci.qexsd.qespresso.converters
    schrodinger.application.matsci.qexsd.qespresso.documents
    schrodinger.application.matsci.qexsd.qespresso.exceptions
    schrodinger.application.matsci.qexsd.qespresso.options
    schrodinger.application.matsci.qexsd.qespresso.utils
    schrodinger.application.matsci.qexsd.qespresso.utils.logger
    schrodinger.application.matsci.qexsd.qespresso.utils.mapping
    schrodinger.application.matsci.qexsd.qespresso.utils.xml2nebinput
    schrodinger.application.matsci.qexsd.qespresso.utils.xml2qeinput
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes.etree
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes.exceptions
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes.xmldocument
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes.xmlschema
    schrodinger.application.matsci.qexsd.qespresso.xsdtypes.xsdtypes
    schrodinger.application.matsci.qexsd.tests.test_converters
    schrodinger.application.matsci.qexsd.utils
    schrodinger.application.matsci.qualityslider
    schrodinger.application.matsci.qubec_utils
    schrodinger.application.matsci.rdpattern
    schrodinger.application.matsci.rdpattern_gui
    schrodinger.application.matsci.reaction_workflow_gui_utils
    schrodinger.application.matsci.reaction_workflow_utils
    schrodinger.application.matsci.reorder
    schrodinger.application.matsci.reordergui
    schrodinger.application.matsci.reportutils
    schrodinger.application.matsci.rxn_channel
    schrodinger.application.matsci.rxn_path
    schrodinger.application.matsci.sculptcomplex
    schrodinger.application.matsci.shapes
    schrodinger.application.matsci.siteselector
    schrodinger.application.matsci.siteselector.siteselector
    schrodinger.application.matsci.sliceplot
    schrodinger.application.matsci.smartsutils
    schrodinger.application.matsci.smartsutilsgui
    schrodinger.application.matsci.spectra
    schrodinger.application.matsci.stress_strain
    schrodinger.application.matsci.swap_fragments_utils
    schrodinger.application.matsci.textlogger
    schrodinger.application.matsci.unique_species
    schrodinger.application.matsci.uq_utils
    schrodinger.application.matsci.xrd
    schrodinger.application.matsci.zmutils
    schrodinger.application.medchem
    schrodinger.application.medchem.property
    schrodinger.application.mopac
    schrodinger.application.mopac.exceptions
    schrodinger.application.mopac.mopac_backend
    schrodinger.application.mopac.mopac_launchers
    schrodinger.application.mopac.mopac_parser
    schrodinger.application.mopac.mopac_startup
    schrodinger.application.mopac.results71
    schrodinger.application.mopac.results_main
    schrodinger.application.mopac.structure_launchers
    schrodinger.application.mopac.utils
    schrodinger.application.msv
    schrodinger.application.msv.command
    schrodinger.application.msv.dependencies
    schrodinger.application.msv.gui
    schrodinger.application.msv.gui.alignment_pane
    schrodinger.application.msv.gui.alignment_pane_ui
    schrodinger.application.msv.gui.binding_site_aln_dialog_ui
    schrodinger.application.msv.gui.color
    schrodinger.application.msv.gui.color_ramp
    schrodinger.application.msv.gui.color_widgets
    schrodinger.application.msv.gui.dendrogram_adv_options_ui
    schrodinger.application.msv.gui.dendrogram_viewer
    schrodinger.application.msv.gui.dendrogram_viewer_ui
    schrodinger.application.msv.gui.dialogs
    schrodinger.application.msv.gui.dialogs.aggregate_property_dialog_ui
    schrodinger.application.msv.gui.dialogs.analyze_binding_site_ui
    schrodinger.application.msv.gui.dialogs.blast_results_dialog_ui
    schrodinger.application.msv.gui.dialogs.blast_search_dialog_ui
    schrodinger.application.msv.gui.dialogs.blast_settings_dialog_ui
    schrodinger.application.msv.gui.dialogs.color_editor_ui
    schrodinger.application.msv.gui.dialogs.compare_seqs_dialog_ui
    schrodinger.application.msv.gui.dialogs.compute_seq_desc_dialog_ui
    schrodinger.application.msv.gui.dialogs.dlg_widgets
    schrodinger.application.msv.gui.dialogs.edit_min_max_ui
    schrodinger.application.msv.gui.dialogs.edit_sequence_as_text_ui
    schrodinger.application.msv.gui.dialogs.get_sequences_dialog_ui
    schrodinger.application.msv.gui.dialogs.manage_seq_prop_dialog_ui
    schrodinger.application.msv.gui.dialogs.optimize_alignment_ui
    schrodinger.application.msv.gui.dialogs.paste_sequence_dialog_ui
    schrodinger.application.msv.gui.dialogs.rename_sequence_dialog_ui
    schrodinger.application.msv.gui.dialogs.renumber_residues_ui
    schrodinger.application.msv.gui.dialogs.select_by_identity_ui
    schrodinger.application.msv.gui.dialogs.seqlinkunlink_ui
    schrodinger.application.msv.gui.dialogs.structure_align_results_dialog_ui
    schrodinger.application.msv.gui.gui_alignment
    schrodinger.application.msv.gui.gui_models
    schrodinger.application.msv.gui.history
    schrodinger.application.msv.gui.homology_modeling.constants
    schrodinger.application.msv.gui.homology_modeling.hm_models
    schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui
    schrodinger.application.msv.gui.homology_modeling.homology_modeling_ui
    schrodinger.application.msv.gui.homology_modeling.homology_multiple_view_tabs_ui
    schrodinger.application.msv.gui.homology_modeling.homology_panel
    schrodinger.application.msv.gui.homology_modeling.ligand_dialog
    schrodinger.application.msv.gui.homology_modeling.ligand_dialog_ui
    schrodinger.application.msv.gui.homology_modeling.settings_dialog
    schrodinger.application.msv.gui.homology_modeling.settings_dialog_ui
    schrodinger.application.msv.gui.homology_modeling.steps
    schrodinger.application.msv.gui.homology_modeling.view_tab_table
    schrodinger.application.msv.gui.menu
    schrodinger.application.msv.gui.msv_gui
    schrodinger.application.msv.gui.msv_rc
    schrodinger.application.msv.gui.msv_widget
    schrodinger.application.msv.gui.multiple_seq_aln_dialog_ui
    schrodinger.application.msv.gui.pairwise_seq_aln_dialog_ui
    schrodinger.application.msv.gui.picking
    schrodinger.application.msv.gui.popups
    schrodinger.application.msv.gui.protein_structure_aln_dialog_ui
    schrodinger.application.msv.gui.row_delegates
    schrodinger.application.msv.gui.stylesheets
    schrodinger.application.msv.gui.tab_widget
    schrodinger.application.msv.gui.toolbar
    schrodinger.application.msv.gui.toolbar_ui
    schrodinger.application.msv.gui.validate_align
    schrodinger.application.msv.gui.view
    schrodinger.application.msv.gui.viewconstants
    schrodinger.application.msv.gui.viewmodel
    schrodinger.application.msv.seqio
    schrodinger.application.msv.structure_model
    schrodinger.application.msv.test_helpers
    schrodinger.application.msv.utils
    schrodinger.application.pathfinder
    schrodinger.application.pathfinder.aligner
    schrodinger.application.pathfinder.analysis
    schrodinger.application.pathfinder.filtering
    schrodinger.application.pathfinder.molio
    schrodinger.application.pathfinder.multiroute
    schrodinger.application.pathfinder.reaction
    schrodinger.application.pathfinder.render
    schrodinger.application.pathfinder.route
    schrodinger.application.pathfinder.synthesis
    schrodinger.application.phase
    schrodinger.application.phase.compare_utils
    schrodinger.application.phase.constants
    schrodinger.application.phase.create_xvol
    schrodinger.application.phase.featureselector
    schrodinger.application.phase.hypothesis
    schrodinger.application.phase.hypothesis_binding_modes
    schrodinger.application.phase.input
    schrodinger.application.phase.license
    schrodinger.application.phase.packages
    schrodinger.application.phase.phase_markers
    schrodinger.application.phase.phase_widgets
    schrodinger.application.phase.pt_hypothesis
    schrodinger.application.phase.shape_screen_reporter
    schrodinger.application.phase.shape_screen_reporter.option_utils
    schrodinger.application.phase.shape_screen_reporter.prop_utils
    schrodinger.application.phase.shape_screen_reporter.task_utils
    schrodinger.application.phase.shape_screen_reporter.tasks
    schrodinger.application.phase.utils
    schrodinger.application.prepwizard
    schrodinger.application.prepwizard2
    schrodinger.application.prepwizard2.diagnostics
    schrodinger.application.prepwizard2.prepare
    schrodinger.application.prepwizard2.tasks
    schrodinger.application.prime
    schrodinger.application.prime.gui
    schrodinger.application.prime.gui.analyze_energy
    schrodinger.application.prime.gui.ui
    schrodinger.application.prime.gui.ui.analyze_energy_ui
    schrodinger.application.prime.gui.ui.environment_options_ui
    schrodinger.application.prime.input
    schrodinger.application.prime.primefix
    schrodinger.application.prime.residue_interaction
    schrodinger.application.prime.wrapper
    schrodinger.application.qsite
    schrodinger.application.qsite.input
    schrodinger.application.qsite.output
    schrodinger.application.report2d
    schrodinger.application.scaffold_enumeration
    schrodinger.application.scaffold_enumeration.atomlist
    schrodinger.application.scaffold_enumeration.common
    schrodinger.application.scaffold_enumeration.cxsmiles
    schrodinger.application.scaffold_enumeration.layered
    schrodinger.application.scaffold_enumeration.linknode
    schrodinger.application.scaffold_enumeration.markush
    schrodinger.application.scaffold_enumeration.mdl
    schrodinger.application.scaffold_enumeration.posvarbond
    schrodinger.application.scaffold_enumeration.rdcml
    schrodinger.application.scisol
    schrodinger.application.ska
    schrodinger.application.steps
    schrodinger.application.steps.basesteps
    schrodinger.application.steps.bigquery_deduplication
    schrodinger.application.steps.converters
    schrodinger.application.steps.dataclasses
    schrodinger.application.steps.docking
    schrodinger.application.steps.enumerators
    schrodinger.application.steps.env_keys
    schrodinger.application.steps.filters
    schrodinger.application.steps.licensing
    schrodinger.application.steps.ligprep
    schrodinger.application.steps.redshift_deduplication
    schrodinger.application.steps.scorers
    schrodinger.application.steps.test
    schrodinger.application.steps.transformers
    schrodinger.application.steps.utils
    schrodinger.application.utils
    schrodinger.application.vss
    schrodinger.application.vss.config
    schrodinger.application.vss.control
    schrodinger.application.vss.csvsmiles
    schrodinger.application.vss.database
    schrodinger.application.vss.dise
    schrodinger.application.vss.pilot
    schrodinger.application.vss.tasks
    schrodinger.application.vsw
    schrodinger.application.vsw.input
    schrodinger.application.vsw.pipeutils
    schrodinger.application.vsw.stages
    schrodinger.application.vsw.stages.combine
    schrodinger.application.vsw.stages.convert
    schrodinger.application.vsw.stages.filtering
    schrodinger.application.vsw.stages.gencodes
    schrodinger.application.vsw.stages.glide
    schrodinger.application.vsw.stages.macromodel
    schrodinger.application.vsw.stages.phase
    schrodinger.application.vsw.stages.prime
    schrodinger.application.vsw.stages.pull
    schrodinger.application.vsw.stages.qikprop
    schrodinger.application.vsw.stages.qsite
    schrodinger.application.vsw.stages.rmsd
    schrodinger.application.vsw.stages.semiemp
    schrodinger.application.vsw.vswinput
    schrodinger.application.watermap
    schrodinger.application.watermap.shapes
    schrodinger.application.watermap.utils
    schrodinger.application.watermap.watermap_inp
    schrodinger.application.watermap.watermap_scoring
    schrodinger.comparison
    schrodinger.comparison.atom_mapper
    schrodinger.comparison.chirality
    schrodinger.comparison.comparison
    schrodinger.comparison.exceptions
    schrodinger.energy
    schrodinger.forcefield
    schrodinger.forcefield.common
    schrodinger.forcefield.constants
    schrodinger.forcefield.custom_params
    schrodinger.forcefield.minimizer
    schrodinger.genericfp
    schrodinger.geometry
    schrodinger.gpgpu
    schrodinger.graphics3d
    schrodinger.graphics3d.arrow
    schrodinger.graphics3d.box
    schrodinger.graphics3d.common
    schrodinger.graphics3d.gridbox
    schrodinger.graphics3d.hemisphere
    schrodinger.graphics3d.lines
    schrodinger.graphics3d.polygon
    schrodinger.graphics3d.polyhedron
    schrodinger.graphics3d.sphere
    schrodinger.graphics3d.torus
    schrodinger.graphics3d.tube
    schrodinger.infra
    schrodinger.infra.ark
    schrodinger.infra.canvas
    schrodinger.infra.canvas2d
    schrodinger.infra.color
    schrodinger.infra.epydoc_to_sphinx
    schrodinger.infra.exception_handler
    schrodinger.infra.exception_handler_dir
    schrodinger.infra.exception_handler_dir.exception_dialog
    schrodinger.infra.exception_handler_dir.exception_dialog_ui
    schrodinger.infra.fast3d
    schrodinger.infra.fix_sip6_enum_access
    schrodinger.infra.gpgpu_utils
    schrodinger.infra.growthspace
    schrodinger.infra.jobhub
    schrodinger.infra.licensing
    schrodinger.infra.mm
    schrodinger.infra.mmbitset
    schrodinger.infra.mmcheck
    schrodinger.infra.mmerr
    schrodinger.infra.mmim
    schrodinger.infra.mminit
    schrodinger.infra.mmjob
    schrodinger.infra.mmkv
    schrodinger.infra.mmlist
    schrodinger.infra.mmobject
    schrodinger.infra.mmproj
    schrodinger.infra.mmreflect
    schrodinger.infra.mmsurf
    schrodinger.infra.mopac
    schrodinger.infra.phase
    schrodinger.infra.projectmodel
    schrodinger.infra.qt_message_handler
    schrodinger.infra.structure
    schrodinger.infra.table
    schrodinger.infra.test
    schrodinger.infra.util
    schrodinger.job
    schrodinger.job.app
    schrodinger.job.cert
    schrodinger.job.download
    schrodinger.job.driver_decorator
    schrodinger.job.files
    schrodinger.job.host_check
    schrodinger.job.hunt_stub
    schrodinger.job.jobcontrol
    schrodinger.job.jobhandler
    schrodinger.job.jobwriter
    schrodinger.job.launchapi
    schrodinger.job.launcher
    schrodinger.job.launchparams
    schrodinger.job.queue
    schrodinger.job.remote_command
    schrodinger.job.resource
    schrodinger.job.server
    schrodinger.job.util
    schrodinger.livedesign.bbchem_endpoints
    schrodinger.livedesign.convert
    schrodinger.livedesign.draw
    schrodinger.livedesign.molhash
    schrodinger.livedesign.preprocessor
    schrodinger.livedesign.rgfile_parse
    schrodinger.livedesign.rgroup_decomposition
    schrodinger.livedesign.setup_reaction
    schrodinger.livedesign.substructure
    schrodinger.maestro
    schrodinger.maestro.color
    schrodinger.maestro.commands
    schrodinger.maestro.maestro
    schrodinger.maestro.markers
    schrodinger.maestro_utils.maestro_sync
    schrodinger.math.mathutils
    schrodinger.math.multi_parameter_optimization
    schrodinger.models
    schrodinger.models.adapters
    schrodinger.models.adapters.abstractadapter
    schrodinger.models.adapters.inputconfig
    schrodinger.models.advanced_mappers
    schrodinger.models.diffy
    schrodinger.models.json
    schrodinger.models.jsonable
    schrodinger.models.mappers
    schrodinger.models.parameters
    schrodinger.models.paramtools
    schrodinger.models.presets
    schrodinger.pipeline
    schrodinger.pipeline.compiled_functions
    schrodinger.pipeline.input
    schrodinger.pipeline.pipeio
    schrodinger.pipeline.pipeline
    schrodinger.pipeline.pipeutils
    schrodinger.pipeline.stage
    schrodinger.pipeline.stages
    schrodinger.pipeline.stages.canvas
    schrodinger.pipeline.stages.combine
    schrodinger.pipeline.stages.convert
    schrodinger.pipeline.stages.example
    schrodinger.pipeline.stages.filtering
    schrodinger.pipeline.stages.gencodes
    schrodinger.pipeline.stages.glide
    schrodinger.pipeline.stages.ligprep
    schrodinger.pipeline.stages.macromodel
    schrodinger.pipeline.stages.phase
    schrodinger.pipeline.stages.prime
    schrodinger.pipeline.stages.pull
    schrodinger.pipeline.stages.qikprop
    schrodinger.pipeline.stages.qsite
    schrodinger.pipeline.stages.rmsd
    schrodinger.pipeline.stages.semiemp
    schrodinger.project
    schrodinger.project.manager
    schrodinger.project.pandasutils
    schrodinger.project.project
    schrodinger.project.surface
    schrodinger.project.utils
    schrodinger.protein
    schrodinger.protein.align
    schrodinger.protein.alignment
    schrodinger.protein.analysis
    schrodinger.protein.analysis_params
    schrodinger.protein.annotation
    schrodinger.protein.assignment
    schrodinger.protein.biounit
    schrodinger.protein.buildpeptide
    schrodinger.protein.captermini
    schrodinger.protein.constants
    schrodinger.protein.findhets
    schrodinger.protein.getpdb
    schrodinger.protein.getpdb_utility
    schrodinger.protein.gpcr
    schrodinger.protein.gpcr.annotate
    schrodinger.protein.gpcr.gpcrdb
    schrodinger.protein.gpcr.sql
    schrodinger.protein.gpcr.tasks
    schrodinger.protein.gpcr.update_gpcr_db
    schrodinger.protein.helix
    schrodinger.protein.membrane
    schrodinger.protein.nonstandard_residues
    schrodinger.protein.pdbname
    schrodinger.protein.predictors
    schrodinger.protein.properties
    schrodinger.protein.reliability
    schrodinger.protein.remediate
    schrodinger.protein.renumber_residues
    schrodinger.protein.residue
    schrodinger.protein.rotamers
    schrodinger.protein.seqres
    schrodinger.protein.sequence
    schrodinger.protein.tasks.binding_site_align
    schrodinger.protein.tasks.blast
    schrodinger.protein.tasks.clustal
    schrodinger.protein.tasks.descriptors
    schrodinger.protein.tasks.kinase
    schrodinger.protein.tasks.mock_blast_output
    schrodinger.protein.tasks.muscle
    schrodinger.protein.tasks.optimize_alignment
    schrodinger.protein.tasks.pfam
    schrodinger.protein.tasks.sta
    schrodinger.protein.tasks.structure_alignment
    schrodinger.Qt
    schrodinger.Qt.PyQt5
    schrodinger.Qt.PyQt5.QtChart
    schrodinger.Qt.PyQt5.QtCharts
    schrodinger.Qt.PyQt5.QtCore
    schrodinger.Qt.PyQt5.QtGui
    schrodinger.Qt.PyQt5.QtNetwork
    schrodinger.Qt.PyQt5.QtOpenGL
    schrodinger.Qt.PyQt5.QtOpenGLWidgets
    schrodinger.Qt.PyQt5.QtPrintSupport
    schrodinger.Qt.PyQt5.QtStateMachine
    schrodinger.Qt.PyQt5.QtSvg
    schrodinger.Qt.PyQt5.QtWidgets
    schrodinger.Qt.PyQt5.sip
    schrodinger.rdkit.alignment
    schrodinger.rdkit.coarsegrain
    schrodinger.rdkit.rgroup
    schrodinger.rdkit_extensions
    schrodinger.shape
    schrodinger.sitemap
    schrodinger.stepper
    schrodinger.stepper.app
    schrodinger.stepper.cloud.aws_client
    schrodinger.stepper.cloud.aws_sqs
    schrodinger.stepper.sideinputs
    schrodinger.stepper.stepper
    schrodinger.stepper.viz
    schrodinger.structure
    schrodinger.structure.structure
    schrodinger.structure.workflow_action_menu
    schrodinger.structutils
    schrodinger.structutils.analyze
    schrodinger.structutils.assignbondorders
    schrodinger.structutils.block_data
    schrodinger.structutils.build
    schrodinger.structutils.check
    schrodinger.structutils.color
    schrodinger.structutils.createfragments
    schrodinger.structutils.filter
    schrodinger.structutils.interactionfp
    schrodinger.structutils.interactions
    schrodinger.structutils.interactions.hbond
    schrodinger.structutils.interactions.pi
    schrodinger.structutils.interactions.protein_protein_interactions
    schrodinger.structutils.interactions.salt_bridge
    schrodinger.structutils.interactions.ssbond
    schrodinger.structutils.interactions.steric_clash
    schrodinger.structutils.io
    schrodinger.structutils.markush_enumerate
    schrodinger.structutils.measure
    schrodinger.structutils.minimize
    schrodinger.structutils.pbc_tools
    schrodinger.structutils.properties
    schrodinger.structutils.residue
    schrodinger.structutils.rgroup_enumerate
    schrodinger.structutils.rings
    schrodinger.structutils.ringspear
    schrodinger.structutils.rmsd
    schrodinger.structutils.shuffle
    schrodinger.structutils.sitealign
    schrodinger.structutils.smiles
    schrodinger.structutils.smilesfilter
    schrodinger.structutils.sort
    schrodinger.structutils.standard_nuclear_orientation
    schrodinger.structutils.structalign
    schrodinger.structutils.transform
    schrodinger.surface
    schrodinger.tasks
    schrodinger.tasks.cmdline
    schrodinger.tasks.gui
    schrodinger.tasks.hosts
    schrodinger.tasks.jobtasks
    schrodinger.tasks.queue
    schrodinger.tasks.taskmanager
    schrodinger.tasks.tasks
    schrodinger.test
    schrodinger.test.af2commontests
    schrodinger.test.build_test_structures
    schrodinger.test.canvas_utils
    schrodinger.test.cluster_info
    schrodinger.test.custom_assertions
    schrodinger.test.custom_test_classes
    schrodinger.test.darwinconsole
    schrodinger.test.decorate_fflag
    schrodinger.test.fakejob
    schrodinger.test.fixtures
    schrodinger.test.hypothesis.hypothesis_profiles
    schrodinger.test.hypothesis.stateful
    schrodinger.test.hypothesis.strategies.indices
    schrodinger.test.hypothesis.strategies.proteins
    schrodinger.test.hypothesis.strategies.structures
    schrodinger.test.hypothesis.strategies.ui
    schrodinger.test.hypothesis.utils
    schrodinger.test.ioredirect
    schrodinger.test.jobserver
    schrodinger.test.ld_base_test_classes
    schrodinger.test.ld_mock_modules
    schrodinger.test.log_parser
    schrodinger.test.memtest
    schrodinger.test.mock_ld_client
    schrodinger.test.mock_ld_models
    schrodinger.test.perceptualdiff
    schrodinger.test.performance
    schrodinger.test.performance.api
    schrodinger.test.performance.client
    schrodinger.test.performance.exceptions
    schrodinger.test.performance.general
    schrodinger.test.performance.reporter
    schrodinger.test.project_mock
    schrodinger.test.pytest
    schrodinger.test.pytest.exetest
    schrodinger.test.pytest.faulthandler_setup
    schrodinger.test.pytest.fixture
    schrodinger.test.pytest.reporter
    schrodinger.test.pytest.sessionfixture
    schrodinger.test.pytest.startup
    schrodinger.test.pytest.warnings
    schrodinger.test.pytest_customizations
    schrodinger.test.qt_utils
    schrodinger.test.scival
    schrodinger.test.structurecheck
    schrodinger.test.stu
    schrodinger.test.stu.base_executable
    schrodinger.test.stu.client
    schrodinger.test.stu.common
    schrodinger.test.stu.constants
    schrodinger.test.stu.get_pdbs
    schrodinger.test.stu.joberrors
    schrodinger.test.stu.outcomes
    schrodinger.test.stu.outcomes.compare_csv
    schrodinger.test.stu.outcomes.compareDesmondSystems
    schrodinger.test.stu.outcomes.confgen_workups
    schrodinger.test.stu.outcomes.correlate_to_reference_file
    schrodinger.test.stu.outcomes.correlate_workup
    schrodinger.test.stu.outcomes.custom
    schrodinger.test.stu.outcomes.custom.asl_count
    schrodinger.test.stu.outcomes.custom.demo_custom_workup
    schrodinger.test.stu.outcomes.custom.enum
    schrodinger.test.stu.outcomes.custom.ffld_workups
    schrodinger.test.stu.outcomes.custom.glide
    schrodinger.test.stu.outcomes.custom.jaguar
    schrodinger.test.stu.outcomes.custom.perceptual_diff
    schrodinger.test.stu.outcomes.custom.phase_workups
    schrodinger.test.stu.outcomes.desmond_workups
    schrodinger.test.stu.outcomes.failures
    schrodinger.test.stu.outcomes.jaguar
    schrodinger.test.stu.outcomes.job_status
    schrodinger.test.stu.outcomes.prime_workups
    schrodinger.test.stu.outcomes.smarts_check
    schrodinger.test.stu.outcomes.standard_workups
    schrodinger.test.stu.outcomes.structure_comparisons
    schrodinger.test.stu.process_management
    schrodinger.test.stu.run
    schrodinger.test.stu.sysinfo
    schrodinger.test.stu.testscripts
    schrodinger.test.stu.workup
    schrodinger.test.stu.workups
    schrodinger.test.stu.workups.workup_tools
    schrodinger.test.test_markers
    schrodinger.test.unittest_utils
    schrodinger.test.warning_messages
    schrodinger.thirdparty
    schrodinger.thirdparty.rdkit_adapter
    schrodinger.trajectory
    schrodinger.trajectory.pbc_manager
    schrodinger.trajectory.prody
    schrodinger.trajectory.prody.mode
    schrodinger.trajectory.prody.modeset
    schrodinger.trajectory.prody.nma
    schrodinger.trajectory.prody.test_arrow
    schrodinger.trajectory.prody.writenmd
    schrodinger.trajectory.traj_dialog_ui
    schrodinger.trajectory.trajectory_gui_dir.advanced_plot_ui
    schrodinger.trajectory.trajectory_gui_dir.advanced_settings
    schrodinger.trajectory.trajectory_gui_dir.advanced_settings_ui
    schrodinger.trajectory.trajectory_gui_dir.banners
    schrodinger.trajectory.trajectory_gui_dir.centroid_banner_ui
    schrodinger.trajectory.trajectory_gui_dir.collapsible_plot_ui
    schrodinger.trajectory.trajectory_gui_dir.custom_asl_sets_dialog_ui
    schrodinger.trajectory.trajectory_gui_dir.custom_substructure_sets_dialog_ui
    schrodinger.trajectory.trajectory_gui_dir.display_settings_data
    schrodinger.trajectory.trajectory_gui_dir.display_settings_manager
    schrodinger.trajectory.trajectory_gui_dir.energy_plot_ui
    schrodinger.trajectory.trajectory_gui_dir.energy_plots
    schrodinger.trajectory.trajectory_gui_dir.export_movie
    schrodinger.trajectory.trajectory_gui_dir.export_movie_ui
    schrodinger.trajectory.trajectory_gui_dir.export_snapshot_structures
    schrodinger.trajectory.trajectory_gui_dir.export_snapshot_structures_ui
    schrodinger.trajectory.trajectory_gui_dir.export_structure_enums
    schrodinger.trajectory.trajectory_gui_dir.export_structures
    schrodinger.trajectory.trajectory_gui_dir.export_structures_ui
    schrodinger.trajectory.trajectory_gui_dir.frame_structure_exporter
    schrodinger.trajectory.trajectory_gui_dir.icons_rc
    schrodinger.trajectory.trajectory_gui_dir.interaction_plots
    schrodinger.trajectory.trajectory_gui_dir.job_settings_dialog_ui
    schrodinger.trajectory.trajectory_gui_dir.planar_banner_ui
    schrodinger.trajectory.trajectory_gui_dir.playback_settings
    schrodinger.trajectory.trajectory_gui_dir.playback_settings_data
    schrodinger.trajectory.trajectory_gui_dir.playback_settings_ui
    schrodinger.trajectory.trajectory_gui_dir.plots
    schrodinger.trajectory.trajectory_gui_dir.rmsd_plots
    schrodinger.trajectory.trajectory_gui_dir.rmsd_settings_dialog_ui
    schrodinger.trajectory.trajectory_gui_dir.secondary_structure_data
    schrodinger.trajectory.trajectory_gui_dir.shortcut_ui
    schrodinger.trajectory.trajectory_gui_dir.snapshot_custom_display_settings
    schrodinger.trajectory.trajectory_gui_dir.snapshot_custom_display_settings_ui
    schrodinger.trajectory.trajectory_gui_dir.snapshot_panel
    schrodinger.trajectory.trajectory_gui_dir.snapshot_panel_ui
    schrodinger.trajectory.trajectory_gui_dir.stylesheet
    schrodinger.trajectory.trajectory_gui_dir.traj_plot_gui
    schrodinger.trajectory.trajectory_gui_dir.traj_plot_models
    schrodinger.trajectory.trajectory_gui_dir.traj_plot_ui
    schrodinger.trajectory.trajectory_gui_dir.traj_plot_widgets
    schrodinger.trajectory.trajectory_gui_dir.trajectory_messages
    schrodinger.trajectory.trajectoryviewer
    schrodinger.trajectory.utils
    schrodinger.trajectory.validate_trajectory
    schrodinger.ui
    schrodinger.ui.chooseligand
    schrodinger.ui.dendrogram
    schrodinger.ui.images_rc
    schrodinger.ui.ligfilter
    schrodinger.ui.ligfilter_definition_dialog_ui
    schrodinger.ui.ligfilter_ui
    schrodinger.ui.maestro_ui
    schrodinger.ui.picking
    schrodinger.ui.picking_dir
    schrodinger.ui.picking_dir.pick_constraint_res_no_maestro_dialog_ui
    schrodinger.ui.picking_dir.pick_lig_no_maestro_dialog_ui
    schrodinger.ui.picking_dir.pick_res_no_maestro_dialog_ui
    schrodinger.ui.qt
    schrodinger.ui.qt.appframework
    schrodinger.ui.qt.appframework2
    schrodinger.ui.qt.appframework2.af2
    schrodinger.ui.qt.appframework2.af2_template
    schrodinger.ui.qt.appframework2.application
    schrodinger.ui.qt.appframework2.appmethods
    schrodinger.ui.qt.appframework2.baseapp
    schrodinger.ui.qt.appframework2.debug
    schrodinger.ui.qt.appframework2.debug_gui
    schrodinger.ui.qt.appframework2.debug_gui_ui
    schrodinger.ui.qt.appframework2.debugcore
    schrodinger.ui.qt.appframework2.debugwidgets
    schrodinger.ui.qt.appframework2.jobnames
    schrodinger.ui.qt.appframework2.jobs
    schrodinger.ui.qt.appframework2.jobwidgets
    schrodinger.ui.qt.appframework2.knime_af2
    schrodinger.ui.qt.appframework2.maestro_callback
    schrodinger.ui.qt.appframework2.markers
    schrodinger.ui.qt.appframework2.settings
    schrodinger.ui.qt.appframework2.tasks
    schrodinger.ui.qt.appframework2.taskwidgets
    schrodinger.ui.qt.appframework2.validation
    schrodinger.ui.qt.appframework2.validators
    schrodinger.ui.qt.appframework2.wizards
    schrodinger.ui.qt.atom_weights_table_ui
    schrodinger.ui.qt.atom_weights_table_widget
    schrodinger.ui.qt.atomselector
    schrodinger.ui.qt.basewidgets
    schrodinger.ui.qt.borderless_popup_ui
    schrodinger.ui.qt.color_picker
    schrodinger.ui.qt.config_dialog
    schrodinger.ui.qt.config_dialog_open_mp_ui
    schrodinger.ui.qt.config_dialog_queue_ui
    schrodinger.ui.qt.datamapper
    schrodinger.ui.qt.decorators
    schrodinger.ui.qt.delegates
    schrodinger.ui.qt.dendrogram
    schrodinger.ui.qt.dialbox
    schrodinger.ui.qt.dialbox_dir
    schrodinger.ui.qt.dialbox_dir.dialbox_qrc
    schrodinger.ui.qt.directory_selector
    schrodinger.ui.qt.entryselector
    schrodinger.ui.qt.entryselector_ui
    schrodinger.ui.qt.figureoptions
    schrodinger.ui.qt.file_selector
    schrodinger.ui.qt.filedialog
    schrodinger.ui.qt.filter_dialog
    schrodinger.ui.qt.filter_dialog_dir
    schrodinger.ui.qt.filter_dialog_dir.filter_core
    schrodinger.ui.qt.filter_dialog_dir.filter_widget_ui
    schrodinger.ui.qt.filter_dialog_dir.filter_widgets
    schrodinger.ui.qt.filter_dialog_ui
    schrodinger.ui.qt.filter_list
    schrodinger.ui.qt.forcefield
    schrodinger.ui.qt.forcefield.ffcustomoplssettingwidget
    schrodinger.ui.qt.forcefield.ffcustomoplssettingwidget_ui
    schrodinger.ui.qt.forcefield.ffglobalpreferencewidget
    schrodinger.ui.qt.forcefield.ffglobalpreferencewidget_ui
    schrodinger.ui.qt.forcefield.ffprojectsettingsdlg
    schrodinger.ui.qt.forcefield.ffprojectsettingsdlg_ui
    schrodinger.ui.qt.forcefield.ffselector
    schrodinger.ui.qt.forcefield.ffsettingsbutton
    schrodinger.ui.qt.forcefield.forcefield
    schrodinger.ui.qt.forcefield.pathselectorwidget
    schrodinger.ui.qt.forcefield.stylesheet
    schrodinger.ui.qt.fp_selector_widget
    schrodinger.ui.qt.fp_selector_widget_ui
    schrodinger.ui.qt.icons
    schrodinger.ui.qt.icons_rc
    schrodinger.ui.qt.input_selector
    schrodinger.ui.qt.jobwidgets
    schrodinger.ui.qt.label
    schrodinger.ui.qt.label_cursor
    schrodinger.ui.qt.layout
    schrodinger.ui.qt.ligand_list
    schrodinger.ui.qt.mapperwidgets
    schrodinger.ui.qt.mapperwidgets.plptable
    schrodinger.ui.qt.matplot_widget
    schrodinger.ui.qt.messagebox
    schrodinger.ui.qt.multi_combo_box
    schrodinger.ui.qt.navtoolbar
    schrodinger.ui.qt.network_views
    schrodinger.ui.qt.network_visualizer
    schrodinger.ui.qt.pdb_dialog
    schrodinger.ui.qt.pdb_dialog_ui
    schrodinger.ui.qt.periodictable
    schrodinger.ui.qt.pop_up_widgets
    schrodinger.ui.qt.presets.manage_presets_dialog
    schrodinger.ui.qt.presets.manage_presets_dialog_ui
    schrodinger.ui.qt.presets.save_presets_dialog
    schrodinger.ui.qt.presets.save_presets_dialog_ui
    schrodinger.ui.qt.propertyselector
    schrodinger.ui.qt.protein_health_viewer
    schrodinger.ui.qt.protein_health_viewer_ui
    schrodinger.ui.qt.rama
    schrodinger.ui.qt.rdmol_views
    schrodinger.ui.qt.recent_completer
    schrodinger.ui.qt.rename_favorite_dialog
    schrodinger.ui.qt.rename_favorite_dialog_ui
    schrodinger.ui.qt.schart
    schrodinger.ui.qt.schrodinger_ipython
    schrodinger.ui.qt.schrodingerstyle
    schrodinger.ui.qt.select_residues_dialog
    schrodinger.ui.qt.select_residues_dialog_ui
    schrodinger.ui.qt.smatplotlib
    schrodinger.ui.qt.standard
    schrodinger.ui.qt.standard.colors
    schrodinger.ui.qt.standard.constants
    schrodinger.ui.qt.standard.design_tokens
    schrodinger.ui.qt.standard.icons
    schrodinger.ui.qt.standard.icons.icons
    schrodinger.ui.qt.standard.panelx_stylesheet
    schrodinger.ui.qt.standard_widgets.buttons
    schrodinger.ui.qt.standard_widgets.flat_button
    schrodinger.ui.qt.standard_widgets.hyperlink
    schrodinger.ui.qt.standard_widgets.labels
    schrodinger.ui.qt.standard_widgets.standard_widgets_rc
    schrodinger.ui.qt.standard_widgets.statusbar
    schrodinger.ui.qt.structtable
    schrodinger.ui.qt.structure2d
    schrodinger.ui.qt.structure_selector
    schrodinger.ui.qt.style
    schrodinger.ui.qt.stylesheet
    schrodinger.ui.qt.swidgets
    schrodinger.ui.qt.table
    schrodinger.ui.qt.table_helper
    schrodinger.ui.qt.table_speed_up
    schrodinger.ui.qt.tablewidget
    schrodinger.ui.qt.tasks
    schrodinger.ui.qt.tasks.config_dialog_ui
    schrodinger.ui.qt.tasks.config_info_ui
    schrodinger.ui.qt.tasks.configwidgets
    schrodinger.ui.qt.tasks.taskbar2
    schrodinger.ui.qt.tasks.taskbar_ui
    schrodinger.ui.qt.tasks.taskbarwidgets
    schrodinger.ui.qt.tasks.taskwidgets
    schrodinger.ui.qt.tooltips
    schrodinger.ui.qt.utils
    schrodinger.ui.qt.widgetmixins
    schrodinger.ui.qt.widgetmixins.basicmixins
    schrodinger.ui.qt.widgetmixins.mock_ui
    schrodinger.ui.qt.widgetmixins.panelmixins
    schrodinger.ui.qt.xsignals
    schrodinger.ui.residueselector
    schrodinger.ui.sketcher
    schrodinger.ui.sketcher_extensions
    schrodinger.ui.two_d_viewer
    schrodinger.ui.two_d_viewer_ui
    schrodinger.utils
    schrodinger.utils.cgxutils
    schrodinger.utils.cmdline
    schrodinger.utils.colorscheme
    schrodinger.utils.config
    schrodinger.utils.csv_unicode
    schrodinger.utils.deprecation
    schrodinger.utils.documentation
    schrodinger.utils.env
    schrodinger.utils.featureflags
    schrodinger.utils.featureflags.featureflags
    schrodinger.utils.featureflags.write
    schrodinger.utils.fileutils
    schrodinger.utils.funcchains
    schrodinger.utils.funcgroups
    schrodinger.utils.future
    schrodinger.utils.imputils
    schrodinger.utils.install_scripts
    schrodinger.utils.installation_check
    schrodinger.utils.license
    schrodinger.utils.ligfilter
    schrodinger.utils.log
    schrodinger.utils.machid
    schrodinger.utils.maestro_scripts_path
    schrodinger.utils.mmutil
    schrodinger.utils.moduleproxy
    schrodinger.utils.multifpfile
    schrodinger.utils.openmpi
    schrodinger.utils.pandasutils
    schrodinger.utils.platform
    schrodinger.utils.postinstall
    schrodinger.utils.preferences
    schrodinger.utils.profiling
    schrodinger.utils.pymol
    schrodinger.utils.qapplication
    schrodinger.utils.qt_utils
    schrodinger.utils.scollections
    schrodinger.utils.sea
    schrodinger.utils.sea.common
    schrodinger.utils.sea.evalor
    schrodinger.utils.sea.sea
    schrodinger.utils.singledashoptionparser
    schrodinger.utils.sshconfig
    schrodinger.utils.subproc
    schrodinger.utils.subprocess
    schrodinger.utils.sysinfo
    schrodinger.utils.thread_utils
    schrodinger.utils.units
    schrodinger.utils.withnone