schrodinger.protein.gpcr.update_gpcr_db module

This script downloads sequence and residue data from the GPCR DB and stores it in a sqlite database.

Copyright Schrodinger, LLC. All rights reserved.

schrodinger.protein.gpcr.update_gpcr_db.create_entry_database()

Create a sqlite database of sequences and residues from the GPCR DB.

The sqlite database is created using a random filename and must be moved to the appropriate location for use.

Returns

Path to sqlite database

Return type

str

schrodinger.protein.gpcr.update_gpcr_db.create_blast_db(gpcr_db_filename: str)

Create a BLAST database using sequences from GPCR DB

Parameters

gpcr_db_filename – Path to database with sequences from GPCR DB

schrodinger.protein.gpcr.update_gpcr_db.main()