schrodinger.application.bioluminate.sliderchart module

Tools for using matplotlib charts.

Copyright Schrodinger, LLC. All rights reserved.

schrodinger.application.bioluminate.sliderchart.prevent_overlapping_x_labels(canvas, axes_number=0)

Given a canvas that contains a figure that contains at least one axes instance, checks the x-axis tick labels to make sure they don’t overlap. If they do, the number of ticks is reduced until there is no overlap.

Parameters
  • canvas (matplotlib canvas object) – the canvas that contains the figure/axes objects

  • axes_number (int) – the index of the axes on the figure to examine. Default is 0, which is the first set of axis added to the figure.

class schrodinger.application.bioluminate.sliderchart.SliderPlot(xvals=None, yvals=None, size=(400, 400), x_label='Residue Sequence', y_label='Values', x_range=None, y_range=None, color='black', cvals=None, bg='white', title='Results', fontsize='small', chart_type='line', marker='square', marker_size=9, shade_color='0.70', hslider_color='red', vslider_color='blue', slider_thickness=3, slider_pick_tolerance=7, slider_moved_callback=None, use_hsliders=True, xstart=0.2, xextent=None, subplot_pos=None)

Bases: PyQt6.QtWidgets.QFrame

A chart that contains four lines the user can slide to select a region of the chart.

__init__(xvals=None, yvals=None, size=(400, 400), x_label='Residue Sequence', y_label='Values', x_range=None, y_range=None, color='black', cvals=None, bg='white', title='Results', fontsize='small', chart_type='line', marker='square', marker_size=9, shade_color='0.70', hslider_color='red', vslider_color='blue', slider_thickness=3, slider_pick_tolerance=7, slider_moved_callback=None, use_hsliders=True, xstart=0.2, xextent=None, subplot_pos=None)

Create a SliderPlot instance.

The plot is returned in a QFrame widget.

Parameters
  • xvals (list) – the x values to plot

  • yvals (list) – y series to plot, should be the same length as xvals

  • size (tuple) – (x, y) plot size in pixels

  • x_label (str) – X-axis label

  • y_label (str) – Y-axis label

  • x_range (tuple) – (min, max) values for the X-axis, default is to show all values

  • y_range (tuple) – (min, max) values for the Y-axis, default is to show all values

  • color (str) – color for the line plot - this is overridden by cvals if cvals is given.

  • cvals (list, tuple or str) – For scatterplots, either a list or tuple of color values for every point, or a string to set a single color for all points. Do not use an RGB list or tuple to set a single color for all points, as that will be interpreted as intended to set individual colors for 3 (or 4 for RGBA) points. This overrides the value of color, and is not used for line plots, only scatter plots. If not given, the value of color is used.

  • bg (str) – color name for the plot background. See marker:color for some color names.

  • title (str) – the title of the plot

  • chart_type (str) – ‘line’ if the chart is a line plot (default), ‘scatter’ if the chart is scatterplot

  • shade_color (str) – A matplotlib-recognized color string that the unselected areas will be shaded

  • hslider_color (str) – A matplotlib-recognized color string that the horizontal sliders will be colored

  • vslider_color (str) – A matplotlib-recognized color string that the vertical sliders will be colored

  • slider_thickness (int) – Linewidth of the slider lines

  • slider_pick_tolerance (int) – Number of pixels the mouse click can be off and still grab the slider

  • slider_moved_callback (callable) – Called when one of the slider lines has been moved. The callback will receive the SlidableLine object that was moved.

  • marker (tuple) – tuple of (symbol, color, size), only used for scatter plots

Marker names are:

  • symbol (1-character str)

  • s - square (‘square’, rectangle accepted)

  • o - circle (‘circle’ accepted)

  • ^ - triangle up (‘arrow’ accepted)

  • > - triangle right

  • < - triangle left

  • v - triangle down

  • d - diamond (‘diamond’ accepted)

  • p - pentagon

  • h - hexagon

  • 8 - octagon

      • plus (‘cross’ accepted)

  • x - x

Parameters
  • marker_size (int) – size of the marker

  • fontsize (int or str) – size in points, or one of the following - - xx-small - x-small - small - medium - large - x-large - xx-large

  • use_hsliders (bool) – horizontal slider is enabled, if True

  • xstart – left percentage margin of the figure

  • xextent (float of None) – if float, right percentage margin of the figure

  • subplot_pos (int) – A three digit integer, where the first digit is the number of rows, the second the number of columns, and the third the index of the current subplot. Index goes left to right, followed but top to bottom. Hence in a 4 grid, top-left is 1, top-right is 2 bottom left is 3 and bottom right is 4. Subplot overrides x_start, y_start, x_end, and y_end.

Xstart

float

Return type

QFrame

Returns

The QFrame widget that contains the plot

replot()

Replot the chart with the current settings

removeColorsForMissingPoints()

Remove any colors for points that are missing X or Y data (X or Y = None) from the list of original values. Does nothing if the point colors are not a list or tuple.

setCVals(cvals)

Set the color values for scatterplot points and replot

Parameters

cvals (list, tuple or str) – Either a list or tuple of color values for every point, or a string to set a single color for all points. Do not use an RGB list or tuple to set a single color for all points, as that will be interpreted as intended to set individual colors for 3 (or 4 for RGBA) points.

removeMissingPoints()

Remove any points that are missing X or Y data (X or Y = None) from the list of original values

Return type

tuple

Returns

tuple of (x-values, y-values) where each item is a list of values. Any point for which x-value or y-value is None has been removed.

setXY(xvals, yvals, x_range=None, y_range=None, replot=True)

Change the X and Y values of the plot

Parameters
  • xvals (list) – the x values to plot

  • yvals (list) – y series to plot, should be the same length as xvals

  • x_range (tuple) – (min, max) values for the X-axis, default is to show all values

  • y_range (tuple) – (min, max) values for the Y-axis, default is to show all values

  • replot (bool) – True of plot should be redrawn (default), False if not. False can be used if a subsequent setY is required.

setX(xvals, x_range=None, replot=True, reset_yrange=False)

Change the X values of the plot

Parameters
  • xvals (list) – the x values to plot

  • x_range (tuple) – (min, max) values for the X-axis, default is to show all values

  • replot (bool) – True of plot should be redrawn (default), False if not. False can be used if a subsequent setY is required.

  • reset_yrange (bool) – True if the y_range should be reset, False (default) if not. It is useful to reset this if the number of datapoints is changing.

setY(yvals, y_range=None, replot=True, reset_xrange=False)

Change the Y values of the plot

Parameters
  • yvals (list) – the y values to plot

  • y_range (tuple) – (min, max) values for the Y-axis, default is to show all values

  • replot (bool) – True of plot should be redrawn (default), False if not. False can be used if a subsequent setY is required.

  • reset_xrange (bool) – True if the y_range should be reset, False (default) if not. It is useful to reset this if the number of datapoints is changing.

getHSliderMin()

Get the current value of the minimum horizontal slider line in plot data units

Return type

float or -INF

Returns

The current value of the minimum horizontal slider, if in use

getHSliderMax()

Get the current value of the maximum horizontal slider line in plot data units

Return type

float or INF

Returns

The current value of the maximum horizontal slider, if in use

getVSliderMin()

Get the current value of the minimum vertical slider line in plot data units

Return type

float

Returns

The current value of the minimum vertical slider

getVSliderMax()

Get the current value of the maximum vertical slider line in plot data units

Return type

float

Returns

The current value of the maximum vertical slider

getSelectedIndexes()

Get the index in the x-value list of points that are contained within the slider lines.

Return type

list

Returns

index in the x-value list of points that are within the box bounded by the slider lines.

getSelectedXY()

Get the set of (x, y) points that are contained within the slider lines

Return type

list

Returns

(x, y) data points that are within the box bounded by the slider lines

getSelectedX()

Get the set of x values for all points that are contained within the slider lines.

Return type

list

Returns

x values of data points that are within the box bounded by the slider lines

setToolbarMessage(event)

Set toolbar message to also work with subplots and show coordinates of subplots in the message

Parameters

event (matplotlib.backend_bases.MouseEvent) – the mouse event prompting this method to be called. Contains information about the location of the cursor and above which matplotlib.axes.Axes object the cursor was at the time of the event, if any.

reset()

Reset the plot

Box = 1
DrawChildren = 2
DrawWindowBackground = 1
HLine = 4
IgnoreMask = 4
NoFrame = 0
class PaintDeviceMetric(value)

Bases: enum.Enum

An enumeration.

PdmWidth = 1
PdmHeight = 2
PdmWidthMM = 3
PdmHeightMM = 4
PdmNumColors = 5
PdmDepth = 6
PdmDpiX = 7
PdmDpiY = 8
PdmPhysicalDpiX = 9
PdmPhysicalDpiY = 10
PdmDevicePixelRatio = 11
PdmDevicePixelRatioScaled = 12
Panel = 2
PdmDepth = 6
PdmDevicePixelRatio = 11
PdmDevicePixelRatioScaled = 12
PdmDpiX = 7
PdmDpiY = 8
PdmHeight = 2
PdmHeightMM = 4
PdmNumColors = 5
PdmPhysicalDpiX = 9
PdmPhysicalDpiY = 10
PdmWidth = 1
PdmWidthMM = 3
Plain = 16
Raised = 32
class RenderFlag(value)

Bases: enum.Flag

An enumeration.

DrawWindowBackground = 1
DrawChildren = 2
IgnoreMask = 4
class Shadow(value)

Bases: enum.IntEnum

An enumeration.

Plain = 16
Raised = 32
Sunken = 48
Shadow_Mask = 240
class Shape(value)

Bases: enum.IntEnum

An enumeration.

NoFrame = 0
Box = 1
Panel = 2
WinPanel = 3
HLine = 4
VLine = 5
StyledPanel = 6
Shape_Mask = 15
class StyleMask(value)

Bases: enum.Enum

An enumeration.

Shadow_Mask = 240
Shape_Mask = 15
StyledPanel = 6
Sunken = 48
VLine = 5
WinPanel = 3
acceptDrops(self) bool
accessibleDescription(self) str
accessibleName(self) str
actionEvent(self, a0: QActionEvent)
actions(self) List[QAction]
activateWindow(self)
addAction(self, action: QAction)
addActions(self, actions: Iterable[QAction])
adjustSize(self)
autoFillBackground(self) bool
backgroundRole(self) QPalette.ColorRole
baseSize(self) QSize
blockSignals(self, b: bool) bool
changeEvent(self, a0: QEvent)
childAt(self, p: QPoint) QWidget
childAt(self, ax: int, ay: int) QWidget
childEvent(self, a0: QChildEvent)
children(self) List[QObject]
childrenRect(self) QRect
childrenRegion(self) QRegion
clearFocus(self)
clearMask(self)
close(self) bool
closeEvent(self, a0: QCloseEvent)
colorCount(self) int
connectNotify(self, signal: QMetaMethod)
contentsMargins(self) QMargins
contentsRect(self) QRect
contextMenuEvent(self, a0: QContextMenuEvent)
contextMenuPolicy(self) Qt.ContextMenuPolicy
create(self, window: PyQt6.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)
createWindowContainer(window: QWindow, parent: typing.Optional[QWidget] = None, flags: Qt.WindowType = Qt.WindowFlags()) QWidget
cursor(self) QCursor
customContextMenuRequested

customContextMenuRequested(self, pos: QPoint) [signal]

customEvent(self, a0: QEvent)
deleteLater(self)
depth(self) int
destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)
destroyed

destroyed(self, object: typing.Optional[QObject] = None) [signal]

devType(self) int
devicePixelRatio(self) float
devicePixelRatioF(self) float
devicePixelRatioFScale() float
disconnect(a0: QMetaObject.Connection) bool
disconnect(self) None
disconnectNotify(self, signal: QMetaMethod)
dragEnterEvent(self, a0: QDragEnterEvent)
dragLeaveEvent(self, a0: QDragLeaveEvent)
dragMoveEvent(self, a0: QDragMoveEvent)
drawFrame(self, a0: QPainter)
dropEvent(self, a0: QDropEvent)
dumpObjectInfo(self)
dumpObjectTree(self)
dynamicPropertyNames(self) List[QByteArray]
effectiveWinId(self) PyQt6.sip.voidptr
ensurePolished(self)
enterEvent(self, event: QEnterEvent)
event(self, e: QEvent) bool
eventFilter(self, a0: QObject, a1: QEvent) bool
find(a0: PyQt6.sip.voidptr) QWidget
findChild(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) QObject
findChild(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) QObject
findChildren(self, type: type, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) List[QObject]
findChildren(self, types: Tuple, name: str = '', options: Qt.FindChildOption = Qt.FindChildrenRecursively) List[QObject]
findChildren(self, type: type, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) List[QObject]
findChildren(self, types: Tuple, re: QRegularExpression, options: Qt.FindChildOption = Qt.FindChildrenRecursively) List[QObject]
focusInEvent(self, a0: QFocusEvent)
focusNextChild(self) bool
focusNextPrevChild(self, next: bool) bool
focusOutEvent(self, a0: QFocusEvent)
focusPolicy(self) Qt.FocusPolicy
focusPreviousChild(self) bool
focusProxy(self) QWidget
focusWidget(self) QWidget
font(self) QFont
fontInfo(self) QFontInfo
fontMetrics(self) QFontMetrics
foregroundRole(self) QPalette.ColorRole
frameGeometry(self) QRect
frameRect(self) QRect
frameShadow(self) QFrame.Shadow
frameShape(self) QFrame.Shape
frameSize(self) QSize
frameStyle(self) int
frameWidth(self) int
geometry(self) QRect
grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) QPixmap
grabGesture(self, type: Qt.GestureType, flags: Qt.GestureFlag = Qt.GestureFlags())
grabKeyboard(self)
grabMouse(self)
grabMouse(self, a0: Union[QCursor, Qt.CursorShape]) None
grabShortcut(self, key: Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) int
graphicsEffect(self) QGraphicsEffect
graphicsProxyWidget(self) QGraphicsProxyWidget
hasFocus(self) bool
hasHeightForWidth(self) bool
hasMouseTracking(self) bool
hasTabletTracking(self) bool
height(self) int
heightForWidth(self, a0: int) int
heightMM(self) int
hide(self)
hideEvent(self, a0: QHideEvent)
inherits(self, classname: str) bool
initPainter(self, painter: QPainter)
initStyleOption(self, option: QStyleOptionFrame)
inputMethodEvent(self, a0: QInputMethodEvent)
inputMethodHints(self) Qt.InputMethodHint
inputMethodQuery(self, a0: Qt.InputMethodQuery) Any
insertAction(self, before: QAction, action: QAction)
insertActions(self, before: QAction, actions: Iterable[QAction])
installEventFilter(self, a0: QObject)
isActiveWindow(self) bool
isAncestorOf(self, child: QWidget) bool
isEnabled(self) bool
isEnabledTo(self, a0: QWidget) bool
isFullScreen(self) bool
isHidden(self) bool
isLeftToRight(self) bool
isMaximized(self) bool
isMinimized(self) bool
isModal(self) bool
isRightToLeft(self) bool
isSignalConnected(self, signal: QMetaMethod) bool
isVisible(self) bool
isVisibleTo(self, a0: QWidget) bool
isWidgetType(self) bool
isWindow(self) bool
isWindowModified(self) bool
isWindowType(self) bool
keyPressEvent(self, a0: QKeyEvent)
keyReleaseEvent(self, a0: QKeyEvent)
keyboardGrabber() QWidget
killTimer(self, id: int)
layout(self) QLayout
layoutDirection(self) Qt.LayoutDirection
leaveEvent(self, a0: QEvent)
lineWidth(self) int
locale(self) QLocale
logicalDpiX(self) int
logicalDpiY(self) int
lower(self)
mapFrom(self, a0: QWidget, a1: QPoint) QPoint
mapFrom(self, a0: QWidget, a1: QPointF) QPointF
mapFromGlobal(self, a0: QPoint) QPoint
mapFromGlobal(self, a0: QPointF) QPointF
mapFromParent(self, a0: QPoint) QPoint
mapFromParent(self, a0: QPointF) QPointF
mapTo(self, a0: QWidget, a1: QPoint) QPoint
mapTo(self, a0: QWidget, a1: QPointF) QPointF
mapToGlobal(self, a0: QPoint) QPoint
mapToGlobal(self, a0: QPointF) QPointF
mapToParent(self, a0: QPoint) QPoint
mapToParent(self, a0: QPointF) QPointF
mask(self) QRegion
maximumHeight(self) int
maximumSize(self) QSize
maximumWidth(self) int
metaObject(self) QMetaObject
metric(self, a0: QPaintDevice.PaintDeviceMetric) int
midLineWidth(self) int
minimumHeight(self) int
minimumSize(self) QSize
minimumSizeHint(self) QSize
minimumWidth(self) int
mouseDoubleClickEvent(self, a0: QMouseEvent)
mouseGrabber() QWidget
mouseMoveEvent(self, a0: QMouseEvent)
mousePressEvent(self, a0: QMouseEvent)
mouseReleaseEvent(self, a0: QMouseEvent)
move(self, a0: QPoint)
move(self, ax: int, ay: int) None
moveEvent(self, a0: QMoveEvent)
moveToThread(self, thread: QThread)
nativeEvent(self, eventType: QByteArray, message: PyQt6.sip.voidptr) Tuple[bool, PyQt6.sip.voidptr]
nativeParentWidget(self) QWidget
nextInFocusChain(self) QWidget
normalGeometry(self) QRect
objectName(self) str
objectNameChanged

objectNameChanged(self, objectName: str) [signal]

overrideWindowFlags(self, type: Qt.WindowType)
overrideWindowState(self, state: Qt.WindowState)
paintEngine(self) QPaintEngine
paintEvent(self, a0: QPaintEvent)
paintingActive(self) bool
palette(self) QPalette
parent(self) QObject
parentWidget(self) QWidget
physicalDpiX(self) int
physicalDpiY(self) int
pos(self) QPoint
previousInFocusChain(self) QWidget
property(self, name: str) Any
pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

raise_(self)
receivers(self, signal: PYQT_SIGNAL) int
rect(self) QRect
releaseKeyboard(self)
releaseMouse(self)
releaseShortcut(self, id: int)
removeAction(self, action: QAction)
removeEventFilter(self, a0: QObject)
render(self, target: QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: QWidget.RenderFlag = QWidget.RenderFlags(QWidget.DrawWindowBackground | QWidget.DrawChildren))
render(self, painter: QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: QWidget.RenderFlag = QWidget.RenderFlags(QWidget.DrawWindowBackground | QWidget.DrawChildren)) None
repaint(self)
repaint(self, x: int, y: int, w: int, h: int) None
repaint(self, a0: QRect) None
repaint(self, a0: QRegion) None
resize(self, a0: QSize)
resize(self, w: int, h: int) None
resizeEvent(self, a0: QResizeEvent)
restoreGeometry(self, geometry: QByteArray) bool
saveGeometry(self) QByteArray
screen(self) QScreen
scroll(self, dx: int, dy: int)
scroll(self, dx: int, dy: int, a2: QRect) None
sender(self) QObject
senderSignalIndex(self) int
setAcceptDrops(self, on: bool)
setAccessibleDescription(self, description: str)
setAccessibleName(self, name: str)
setAttribute(self, attribute: Qt.WidgetAttribute, on: bool = True)
setAutoFillBackground(self, enabled: bool)
setBackgroundRole(self, a0: QPalette.ColorRole)
setBaseSize(self, basew: int, baseh: int)
setBaseSize(self, s: QSize) None
setContentsMargins(self, left: int, top: int, right: int, bottom: int)
setContentsMargins(self, margins: QMargins) None
setContextMenuPolicy(self, policy: Qt.ContextMenuPolicy)
setCursor(self, a0: Union[QCursor, Qt.CursorShape])
setDisabled(self, a0: bool)
setEnabled(self, a0: bool)
setFixedHeight(self, h: int)
setFixedSize(self, a0: QSize)
setFixedSize(self, w: int, h: int) None
setFixedWidth(self, w: int)
setFocus(self)
setFocus(self, reason: Qt.FocusReason) None
setFocusPolicy(self, policy: Qt.FocusPolicy)
setFocusProxy(self, a0: QWidget)
setFont(self, a0: QFont)
setForegroundRole(self, a0: QPalette.ColorRole)
setFrameRect(self, a0: QRect)
setFrameShadow(self, a0: QFrame.Shadow)
setFrameShape(self, a0: QFrame.Shape)
setFrameStyle(self, a0: int)
setGeometry(self, a0: QRect)
setGeometry(self, ax: int, ay: int, aw: int, ah: int) None
setGraphicsEffect(self, effect: QGraphicsEffect)
setHidden(self, hidden: bool)
setInputMethodHints(self, hints: Qt.InputMethodHint)
setLayout(self, a0: QLayout)
setLayoutDirection(self, direction: Qt.LayoutDirection)
setLineWidth(self, a0: int)
setLocale(self, locale: QLocale)
setMask(self, a0: QBitmap)
setMask(self, a0: QRegion) None
setMaximumHeight(self, maxh: int)
setMaximumSize(self, maxw: int, maxh: int)
setMaximumSize(self, s: QSize) None
setMaximumWidth(self, maxw: int)
setMidLineWidth(self, a0: int)
setMinimumHeight(self, minh: int)
setMinimumSize(self, minw: int, minh: int)
setMinimumSize(self, s: QSize) None
setMinimumWidth(self, minw: int)
setMouseTracking(self, enable: bool)
setObjectName(self, name: str)
setPalette(self, a0: QPalette)
setParent(self, parent: QWidget)
setParent(self, parent: QWidget, f: Qt.WindowType) None
setProperty(self, name: str, value: Any) bool
setScreen(self, a0: QScreen)
setShortcutAutoRepeat(self, id: int, enabled: bool = True)
setShortcutEnabled(self, id: int, enabled: bool = True)
setSizeIncrement(self, w: int, h: int)
setSizeIncrement(self, s: QSize) None
setSizePolicy(self, a0: QSizePolicy)
setSizePolicy(self, hor: QSizePolicy.Policy, ver: QSizePolicy.Policy) None
setStatusTip(self, a0: str)
setStyle(self, a0: QStyle)
setStyleSheet(self, styleSheet: str)
setTabOrder(a0: QWidget, a1: QWidget)
setTabletTracking(self, enable: bool)
setToolTip(self, a0: str)
setToolTipDuration(self, msec: int)
setUpdatesEnabled(self, enable: bool)
setVisible(self, visible: bool)
setWhatsThis(self, a0: str)
setWindowFilePath(self, filePath: str)
setWindowFlag(self, a0: Qt.WindowType, on: bool = True)
setWindowFlags(self, type: Qt.WindowType)
setWindowIcon(self, icon: QIcon)
setWindowIconText(self, a0: str)
setWindowModality(self, windowModality: Qt.WindowModality)
setWindowModified(self, a0: bool)
setWindowOpacity(self, level: float)
setWindowRole(self, a0: str)
setWindowState(self, state: Qt.WindowState)
setWindowTitle(self, a0: str)
sharedPainter(self) QPainter
show(self)
showEvent(self, a0: QShowEvent)
showFullScreen(self)
showMaximized(self)
showMinimized(self)
showNormal(self)
signalsBlocked(self) bool
size(self) QSize
sizeHint(self) QSize
sizeIncrement(self) QSize
sizePolicy(self) QSizePolicy
stackUnder(self, a0: QWidget)
startTimer(self, interval: int, timerType: Qt.TimerType = Qt.CoarseTimer) int
staticMetaObject = <PyQt6.QtCore.QMetaObject object>
statusTip(self) str
style(self) QStyle
styleSheet(self) str
tabletEvent(self, a0: QTabletEvent)
testAttribute(self, attribute: Qt.WidgetAttribute) bool
thread(self) QThread
timerEvent(self, a0: QTimerEvent)
toolTip(self) str
toolTipDuration(self) int
tr(sourceText: str, disambiguation: typing.Optional[str] = None, n: int = - 1) str
underMouse(self) bool
ungrabGesture(self, type: Qt.GestureType)
unsetCursor(self)
unsetLayoutDirection(self)
unsetLocale(self)
update(self)
update(self, a0: QRect) None
update(self, a0: QRegion) None
update(self, ax: int, ay: int, aw: int, ah: int) None
updateGeometry(self)
updateMicroFocus(self, query: Qt.InputMethodQuery = Qt.ImQueryAll)
updatesEnabled(self) bool
visibleRegion(self) QRegion
whatsThis(self) str
wheelEvent(self, a0: QWheelEvent)
width(self) int
widthMM(self) int
winId(self) PyQt6.sip.voidptr
window(self) QWidget
windowFilePath(self) str
windowFlags(self) Qt.WindowType
windowHandle(self) QWindow
windowIcon(self) QIcon
windowIconChanged

windowIconChanged(self, icon: QIcon) [signal]

windowIconText(self) str
windowIconTextChanged

windowIconTextChanged(self, iconText: str) [signal]

windowModality(self) Qt.WindowModality
windowOpacity(self) float
windowRole(self) str
windowState(self) Qt.WindowState
windowTitle(self) str
windowTitleChanged

windowTitleChanged(self, title: str) [signal]

windowType(self) Qt.WindowType
x(self) int
y(self) int
class schrodinger.application.bioluminate.sliderchart.SlidableLine(parent, axes, line, tolerance=7, border='high', shade_color='0.70', callback=None)

Bases: object

A line on a matplotlib plot that can be grabbed and moved by the user

__init__(parent, axes, line, tolerance=7, border='high', shade_color='0.70', callback=None)

Create a SlidableLine object

Parameters
  • parent (SliderPlot object) – The matplotlib canvas these lines are plotted on

  • axes (matplotlib Axes object) – The matplotlib axes these lines are plotted on

  • line (matplotlib Line2D object) – the actual line that will be moved

  • tolerance (int) – The amount that the user can “miss” the line and still grab it

  • border (str) – either “high” or “low”, the role this line plays in bounding the box - high lines are those that bound the upper value of X or Y

  • shade_color (str) – A matplotlib-recognized color string that the unselected areas will be shaded

  • callback (callable) – Called when the slider line has been moved. The callback will receive the SlidableLine object that was moved.

onRelease(event)

Stop checking for movement when the mouse button is released

remove()

Remove this from the plot

class schrodinger.application.bioluminate.sliderchart.SlidableHLine(*args, **kwargs)

Bases: schrodinger.application.bioluminate.sliderchart.SlidableLine

A horizontal line on a matplotlib plot that can be grabbed and moved by the user

__init__(*args, **kwargs)

Create a SlidableHLine object

See parent class for argument documentation

getPosition()

Return the position of the line in data coordinates

Return type

float

Returns

The current position of the line in data coordinates

getAxisExtreme()

Return the most extreme (high or low) value this line should take

Return type

float

Returns

The most extreme value this line can take in data coordinates

setPosition(value)

Change the position of the line to value. However, we don’t allow the high/low boundary lines to cross, or to go off the plot.

Parameters

value (float) – The new y value to attempt to place the line at

onMotion(event)

Move the line if it is currently moving and the mouse moved

Parameters

event (matplotlib mouse event) – the event object generated by mouse movement

onPress(event)

Check to see if the user clicked this line

Parameters

event (matplotlib mouse event) – the event object generated by mouse click

onRelease(event)

Stop checking for movement when the mouse button is released

remove()

Remove this from the plot

class schrodinger.application.bioluminate.sliderchart.SlidableVLine(*args, **kwargs)

Bases: schrodinger.application.bioluminate.sliderchart.SlidableLine

A vertical line on a matplotlib plot that can be grabbed and moved by the user

__init__(*args, **kwargs)

Create a SlidableVLine object

See parent class for argument documentation

getPosition()

Return the position of the line in data coordinates

Return type

float

Returns

The current position of the line in data coordinates

setPosition(value)

Change the position of the line to value. However, we don’t allow the high/low boundary lines to cross, or to go off the plot.

Parameters

value (float) – The new x value to attempt to place the line at

getAxisExtreme()

Return the most extreme (high or low) value this line should take

Return type

float

Returns

The most extreme value this line can take in data coordinates

onMotion(event)

Move the line if it is currently moving and the mouse moved

Parameters

event (matplotlib mouse event) – the event object generated by mouse movement

onPress(event)

Check to see if the user clicked this line

Parameters

event (matplotlib mouse event) – the event object generated by mouse click

onRelease(event)

Stop checking for movement when the mouse button is released

remove()

Remove this from the plot