Source code for schrodinger.application.msv.gui.dialogs.blast_settings_dialog_ui
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/scr/buildbot/src/mmshare/python/modules/schrodinger/application/msv/gui/dialogs/blast_settings_dialog.ui'
#
# Created by: PyQt5 UI code generator 5.15.4
#
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
# run again. Do not edit this file unless you know what you are doing.
from PyQt5 import QtCore, QtGui, QtWidgets
[docs]class Ui_Form(object):
[docs] def setupUi(self, Form):
Form.setObjectName("Form")
Form.resize(320, 637)
self.verticalLayout_2 = QtWidgets.QVBoxLayout(Form)
self.verticalLayout_2.setSpacing(10)
self.verticalLayout_2.setObjectName("verticalLayout_2")
self.local_only_cb = QtWidgets.QCheckBox(Form)
self.local_only_cb.setObjectName("local_only_cb")
self.verticalLayout_2.addWidget(self.local_only_cb)
self.gridLayout_2 = QtWidgets.QGridLayout()
self.gridLayout_2.setObjectName("gridLayout_2")
self.horizontalLayout_3 = QtWidgets.QHBoxLayout()
self.horizontalLayout_3.setObjectName("horizontalLayout_3")
self.blast_rb = QtWidgets.QRadioButton(Form)
self.blast_rb.setObjectName("blast_rb")
self.horizontalLayout_3.addWidget(self.blast_rb)
self.psiblast_rb = QtWidgets.QRadioButton(Form)
self.psiblast_rb.setObjectName("psiblast_rb")
self.horizontalLayout_3.addWidget(self.psiblast_rb)
self.gridLayout_2.addLayout(self.horizontalLayout_3, 0, 1, 1, 1)
self.label = QtWidgets.QLabel(Form)
self.label.setObjectName("label")
self.gridLayout_2.addWidget(self.label, 0, 0, 1, 1)
self.verticalLayout_2.addLayout(self.gridLayout_2)
self.horizontalLayout_4 = QtWidgets.QHBoxLayout()
self.horizontalLayout_4.setObjectName("horizontalLayout_4")
self.label_2 = QtWidgets.QLabel(Form)
self.label_2.setObjectName("label_2")
self.horizontalLayout_4.addWidget(self.label_2)
self.similarity_matrix_combo = EnumComboBox(Form)
self.similarity_matrix_combo.setObjectName("similarity_matrix_combo")
self.horizontalLayout_4.addWidget(self.similarity_matrix_combo)
self.verticalLayout_2.addLayout(self.horizontalLayout_4)
self.verticalLayout_4 = QtWidgets.QVBoxLayout()
self.verticalLayout_4.setSpacing(5)
self.verticalLayout_4.setObjectName("verticalLayout_4")
self.label_3 = QtWidgets.QLabel(Form)
self.label_3.setObjectName("label_3")
self.verticalLayout_4.addWidget(self.label_3)
self.gap_open_layout = QtWidgets.QHBoxLayout()
self.gap_open_layout.setContentsMargins(20, -1, -1, -1)
self.gap_open_layout.setObjectName("gap_open_layout")
self.label_5 = QtWidgets.QLabel(Form)
self.label_5.setObjectName("label_5")
self.gap_open_layout.addWidget(self.label_5)
spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.gap_open_layout.addItem(spacerItem)
self.verticalLayout_4.addLayout(self.gap_open_layout)
self.horizontalLayout_5 = QtWidgets.QHBoxLayout()
self.horizontalLayout_5.setContentsMargins(20, -1, -1, -1)
self.horizontalLayout_5.setObjectName("horizontalLayout_5")
self.label_4 = QtWidgets.QLabel(Form)
self.label_4.setObjectName("label_4")
self.horizontalLayout_5.addWidget(self.label_4)
spacerItem1 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.horizontalLayout_5.addItem(spacerItem1)
self.extension_1_rb = QtWidgets.QRadioButton(Form)
self.extension_1_rb.setObjectName("extension_1_rb")
self.horizontalLayout_5.addWidget(self.extension_1_rb)
self.extension_2_rb = QtWidgets.QRadioButton(Form)
self.extension_2_rb.setObjectName("extension_2_rb")
self.horizontalLayout_5.addWidget(self.extension_2_rb)
self.extension_3_rb = QtWidgets.QRadioButton(Form)
self.extension_3_rb.setObjectName("extension_3_rb")
self.horizontalLayout_5.addWidget(self.extension_3_rb)
self.verticalLayout_4.addLayout(self.horizontalLayout_5)
self.verticalLayout_2.addLayout(self.verticalLayout_4)
self.horizontalLayout_7 = QtWidgets.QHBoxLayout()
self.horizontalLayout_7.setObjectName("horizontalLayout_7")
self.label_6 = QtWidgets.QLabel(Form)
self.label_6.setObjectName("label_6")
self.horizontalLayout_7.addWidget(self.label_6)
spacerItem2 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.horizontalLayout_7.addItem(spacerItem2)
self.wordsize_2_rb = QtWidgets.QRadioButton(Form)
self.wordsize_2_rb.setObjectName("wordsize_2_rb")
self.horizontalLayout_7.addWidget(self.wordsize_2_rb)
self.wordsize_3_rb = QtWidgets.QRadioButton(Form)
self.wordsize_3_rb.setObjectName("wordsize_3_rb")
self.horizontalLayout_7.addWidget(self.wordsize_3_rb)
self.verticalLayout_2.addLayout(self.horizontalLayout_7)
self.horizontalLayout_8 = QtWidgets.QHBoxLayout()
self.horizontalLayout_8.setObjectName("horizontalLayout_8")
self.label_8 = QtWidgets.QLabel(Form)
self.label_8.setTextFormat(QtCore.Qt.RichText)
self.label_8.setObjectName("label_8")
self.horizontalLayout_8.addWidget(self.label_8)
spacerItem3 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.horizontalLayout_8.addItem(spacerItem3)
self.label_7 = QtWidgets.QLabel(Form)
self.label_7.setObjectName("label_7")
self.horizontalLayout_8.addWidget(self.label_7)
self.evalue_threshold_sb = QtWidgets.QSpinBox(Form)
self.evalue_threshold_sb.setMinimum(-10)
self.evalue_threshold_sb.setMaximum(10)
self.evalue_threshold_sb.setProperty("value", 1)
self.evalue_threshold_sb.setObjectName("evalue_threshold_sb")
self.horizontalLayout_8.addWidget(self.evalue_threshold_sb)
self.verticalLayout_2.addLayout(self.horizontalLayout_8)
self.filter_query_layout = QtWidgets.QHBoxLayout()
self.filter_query_layout.setObjectName("filter_query_layout")
self.filter_query_cb = QtWidgets.QCheckBox(Form)
self.filter_query_cb.setObjectName("filter_query_cb")
self.filter_query_layout.addWidget(self.filter_query_cb)
self.filter_query_info_lbl = QtWidgets.QLabel(Form)
self.filter_query_info_lbl.setText("")
self.filter_query_info_lbl.setObjectName("filter_query_info_lbl")
self.filter_query_layout.addWidget(self.filter_query_info_lbl)
self.verticalLayout_2.addLayout(self.filter_query_layout)
self.psiblast_settings_layout = QtWidgets.QVBoxLayout()
self.psiblast_settings_layout.setObjectName("psiblast_settings_layout")
self.label_9 = QtWidgets.QLabel(Form)
self.label_9.setObjectName("label_9")
self.psiblast_settings_layout.addWidget(self.label_9)
self.verticalLayout_2.addLayout(self.psiblast_settings_layout)
self.gridLayout = QtWidgets.QGridLayout()
self.gridLayout.setContentsMargins(20, -1, -1, -1)
self.gridLayout.setVerticalSpacing(2)
self.gridLayout.setObjectName("gridLayout")
self.label_10 = QtWidgets.QLabel(Form)
self.label_10.setObjectName("label_10")
self.gridLayout.addWidget(self.label_10, 0, 0, 1, 1)
spacerItem4 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.gridLayout.addItem(spacerItem4, 0, 1, 1, 1)
self.num_iterations_sb = QtWidgets.QSpinBox(Form)
self.num_iterations_sb.setProperty("value", 3)
self.num_iterations_sb.setObjectName("num_iterations_sb")
self.gridLayout.addWidget(self.num_iterations_sb, 0, 2, 1, 1)
self.label_11 = QtWidgets.QLabel(Form)
self.label_11.setObjectName("label_11")
self.gridLayout.addWidget(self.label_11, 1, 0, 1, 1)
spacerItem5 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.gridLayout.addItem(spacerItem5, 1, 1, 1, 1)
self.inclusion_threshold_sb = QtWidgets.QDoubleSpinBox(Form)
self.inclusion_threshold_sb.setButtonSymbols(QtWidgets.QAbstractSpinBox.NoButtons)
self.inclusion_threshold_sb.setSingleStep(0.01)
self.inclusion_threshold_sb.setProperty("value", 5.0)
self.inclusion_threshold_sb.setObjectName("inclusion_threshold_sb")
self.gridLayout.addWidget(self.inclusion_threshold_sb, 1, 2, 1, 1)
self.verticalLayout_2.addLayout(self.gridLayout)
self.reset_all_layout = QtWidgets.QHBoxLayout()
self.reset_all_layout.setObjectName("reset_all_layout")
spacerItem6 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
self.reset_all_layout.addItem(spacerItem6)
self.verticalLayout_2.addLayout(self.reset_all_layout)
self.retranslateUi(Form)
QtCore.QMetaObject.connectSlotsByName(Form)
[docs] def retranslateUi(self, Form):
_translate = QtCore.QCoreApplication.translate
Form.setWindowTitle(_translate("Form", "Form"))
self.local_only_cb.setText(_translate("Form", "Use local server only"))
self.blast_rb.setText(_translate("Form", "BLAST"))
self.psiblast_rb.setText(_translate("Form", "PSI-BLAST"))
self.label.setText(_translate("Form", "Algorithm:"))
self.label_2.setText(_translate("Form", "Similarity Matrix:"))
self.label_3.setText(_translate("Form", "Gap penalties:"))
self.label_5.setText(_translate("Form", "Opening:"))
self.label_4.setText(_translate("Form", "Extending:"))
self.extension_1_rb.setText(_translate("Form", "1"))
self.extension_2_rb.setText(_translate("Form", "2"))
self.extension_3_rb.setText(_translate("Form", "3"))
self.label_6.setText(_translate("Form", "Word size:"))
self.wordsize_2_rb.setText(_translate("Form", "2"))
self.wordsize_3_rb.setText(_translate("Form", "3"))
self.label_8.setText(_translate("Form", "Expect (E) value <br>threshold:"))
self.label_7.setText(_translate("Form", "10 ^"))
self.filter_query_cb.setText(_translate("Form", "Filter Reference"))
self.filter_query_info_lbl.setToolTip(_translate("Form", "Filter reference sequence with SEG to remove low complexity regions"))
self.label_9.setText(_translate("Form", "Additional PSI-BLAST options:"))
self.label_10.setText(_translate("Form", "Iterations:"))
self.label_11.setText(_translate("Form", "Inclusion threshold:"))
from schrodinger.ui.qt.mapperwidgets import EnumComboBox