schrodinger.application.msv.gui.homology_modeling.steps module¶

class schrodinger.application.msv.gui.homology_modeling.steps.AbstractStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._ToolTipMixin, schrodinger.models.mappers.MapperMixin, schrodinger.ui.qt.basewidgets.BaseWidget

Abstract class for a homology modeling step.

Subclasses must define _onPairsChanged, which is called with target_template_pairs

Variables

TEXT – The text for the checkbox
DETAIL_TEXT – The detail text
EXTRA_STYLESHEET – Additional stylesheet to append
TOOLTIP – The text to show on clicking on info button

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

TEXT = ''¶

DETAIL_TEXT = ''¶

EXTRA_STYLESHEET = ''¶

TOTAL_WIDTH = 300¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

defineMappings()[source]¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

setStatusText(text)[source]¶: Set text to the status label

setStatus(status=None)[source]¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

makeInitialModel()[source]¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOOLTIP = ''¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AbstractStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AbstractStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AbstractStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AbstractStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AbstractStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AbstractStep.scroll(self, int, int)
AbstractStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AbstractStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AbstractStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AbstractStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AbstractStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AbstractStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AbstractStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AbstractStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AbstractStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AbstractStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.AbstractActionStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._ActionMixin, schrodinger.application.msv.gui.homology_modeling.steps.AbstractStep

Class for steps where the corresponding action cannot be performed in MSV2

ACTIONS = NotImplemented¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = ''¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = ''¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = ''¶

TOOLTIP = ''¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AbstractActionStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AbstractActionStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AbstractActionStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AbstractActionStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AbstractActionStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AbstractActionStep.scroll(self, int, int)
AbstractActionStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AbstractActionStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AbstractActionStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AbstractActionStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AbstractActionStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AbstractActionStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AbstractActionStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AbstractActionStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AbstractActionStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AbstractActionStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflowStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.AbstractStep

Class for homology modeling steps that are part of the workflow

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

setStatus(status=None)[source]¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = ''¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = ''¶

TOOLTIP = ''¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AbstractWorkflowStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AbstractWorkflowStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AbstractWorkflowStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AbstractWorkflowStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AbstractWorkflowStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AbstractWorkflowStep.scroll(self, int, int)
AbstractWorkflowStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AbstractWorkflowStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AbstractWorkflowStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AbstractWorkflowStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AbstractWorkflowStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AbstractWorkflowStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AbstractWorkflowStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AbstractWorkflowStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AbstractWorkflowStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AbstractWorkflowStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._AbstractSequenceStep

TEXT = 'Get the target sequence'¶

DETAIL_TEXT = 'Must be first (Reference) sequence'¶

ACTIONS = (<StepAction.IMPORT_SEQUENCE: 'Import Sequence...'>,)¶

TOOLTIP = '\n If the target is not already in the tab, use this link to load\n a FASTA file. The imported sequence will be set as the\n Reference.\n If multiple sequences are imported, the first will be used. To\n change the target, right-click the intended sequence and choose\n Set as Reference from the menu.\n The target will always be marked in the list with a green square.\n '¶

importSeqAsRefRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
TargetSequenceStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

TargetSequenceStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
TargetSequenceStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
TargetSequenceStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
TargetSequenceStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

TargetSequenceStep.scroll(self, int, int)
TargetSequenceStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

TargetSequenceStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

TargetSequenceStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
TargetSequenceStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
TargetSequenceStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

TargetSequenceStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

TargetSequenceStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

TargetSequenceStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

TargetSequenceStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
TargetSequenceStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.BatchTargetSequenceStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep

TEXT = 'Get 1st target'¶

DETAIL_TEXT = 'Set as Reference for finding template'¶

TOOLTIP = '\n If the targets are not already in the tab, use this link to load a FASTA\n file. The imported sequence will be set as the Reference and used to locate\n the template in the next step.\n If multiple sequences are imported, they will all be selected and marked as\n targets with a green square. The first will be set as the Reference. To use\n a different sequence in the search, right-click the sequence and choose\n Set as Reference from the menu.\n '¶

ACTIONS = (<StepAction.IMPORT_SEQUENCE: 'Import Sequence...'>,)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
BatchTargetSequenceStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

BatchTargetSequenceStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
BatchTargetSequenceStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
BatchTargetSequenceStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
BatchTargetSequenceStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

BatchTargetSequenceStep.scroll(self, int, int)
BatchTargetSequenceStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

BatchTargetSequenceStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

BatchTargetSequenceStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
BatchTargetSequenceStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
BatchTargetSequenceStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

BatchTargetSequenceStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

BatchTargetSequenceStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

BatchTargetSequenceStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

BatchTargetSequenceStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
BatchTargetSequenceStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.OtherTargetsStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep

TEXT = 'Get other targets'¶

DETAIL_TEXT = 'Targets must be below reference (all or selected)'¶

ACTIONS = (<StepAction.IMPORT_SEQUENCES: 'Import Sequences...'>,)¶

TOOLTIP = '\n If you did not previously load all the targets into the tab, use this\n link to import the rest now. (You may select more than one file from\n within the Import dialog.)\n The new sequences will be added below the Reference. To model only some\n of the structureless sequences in the tab, select them in the sequence\n list. The targets to be modeled will be marked with a green square.\n '¶

importSeqRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
OtherTargetsStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

OtherTargetsStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
OtherTargetsStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
OtherTargetsStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
OtherTargetsStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

OtherTargetsStep.scroll(self, int, int)
OtherTargetsStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

OtherTargetsStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

OtherTargetsStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
OtherTargetsStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
OtherTargetsStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

OtherTargetsStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

OtherTargetsStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

OtherTargetsStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

OtherTargetsStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
OtherTargetsStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.TemplateStructureStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._AbstractSequenceStep

TEXT = 'Specify a template structure'¶

DETAIL_TEXT = 'Usually second sequence'¶

ACTIONS = (<StepAction.FIND_HOMOLOGS: 'Find...'>, <StepAction.IMPORT_HOMOLOGS: 'Import...'>)¶

TOOLTIP = '\n If the template is not already in the tab, you may use one of these\n links to add it. Choose Import to load it from a file, Find\n to locate one via a BLAST search. When the search results are shown,\n select one structure to import.\n The newly imported sequence will be marked in the list as the template,\n with a magenta color behind the structure icon. (If multiple structures\n have been imported, select the sequence you want to use.)\n If you need to return to the search results, just click Find\n again.\n '¶

findHomologsRequested¶

importHomologsRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
TemplateStructureStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

TemplateStructureStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
TemplateStructureStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
TemplateStructureStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
TemplateStructureStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

TemplateStructureStep.scroll(self, int, int)
TemplateStructureStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

TemplateStructureStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

TemplateStructureStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
TemplateStructureStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
TemplateStructureStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

TemplateStructureStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

TemplateStructureStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

TemplateStructureStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

TemplateStructureStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
TemplateStructureStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.BatchTemplateStructureStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.TemplateStructureStep

TEXT = 'Specify template structure'¶

DETAIL_TEXT = 'Once in tab, template must be set as Reference for modeling'¶

TOOLTIP = '\n If the template is not already in the tab, use one of these links to add\n it. Choose Import to load it from a file, Find to run a BLAST\n search. When the search results are shown, select one structure to import.\n The new sequence will be selected and marked as the template, with a\n magenta color behind the structure icon. (If multiple structures have been\n imported, select the sequence you want to use.)\n Then click the Set as Reference link. The template will move to\n the top and become the Reference, and all structureless sequences in the\n tab will be marked as targets, with a green square.\n '¶

setAsReferenceRequested¶

ACTIONS = (<StepAction.FIND_HOMOLOGS: 'Find...'>, <StepAction.IMPORT_HOMOLOGS: 'Import...'>, <StepAction.SET_AS_REFERENCE: 'Set as Reference'>)¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
BatchTemplateStructureStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

BatchTemplateStructureStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
BatchTemplateStructureStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
BatchTemplateStructureStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
BatchTemplateStructureStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

BatchTemplateStructureStep.scroll(self, int, int)
BatchTemplateStructureStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

BatchTemplateStructureStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

BatchTemplateStructureStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
BatchTemplateStructureStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
BatchTemplateStructureStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

BatchTemplateStructureStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

BatchTemplateStructureStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

BatchTemplateStructureStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

BatchTemplateStructureStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
BatchTemplateStructureStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplateStructuresStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.TemplateStructureStep

TEXT = 'Specify template structures'¶

DETAIL_TEXT = 'Must be second and later sequences'¶

TOOLTIP = '\n If the templates are not already in the tab, you may use either of these\n links to add them. Choose Import to load structures from a file,\n Find to locate them via a BLAST search. When the search results are\n shown, select the structures to import.\n The newly imported structures will be marked in the list as templates,\n with a magenta color behind their structure icons. (If extra structures\n have been imported, select the sequences you want to use.)\n If you need to return to the search results, just click Find\n again.\n '¶

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

ACTIONS = (<StepAction.FIND_HOMOLOGS: 'Find...'>, <StepAction.IMPORT_HOMOLOGS: 'Import...'>)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
MultipleTemplateStructuresStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

MultipleTemplateStructuresStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
MultipleTemplateStructuresStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
MultipleTemplateStructuresStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
MultipleTemplateStructuresStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

MultipleTemplateStructuresStep.scroll(self, int, int)
MultipleTemplateStructuresStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

MultipleTemplateStructuresStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

MultipleTemplateStructuresStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
MultipleTemplateStructuresStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
MultipleTemplateStructuresStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

MultipleTemplateStructuresStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

MultipleTemplateStructuresStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

MultipleTemplateStructuresStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

MultipleTemplateStructuresStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
MultipleTemplateStructuresStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HomomultimerTemplateStructuresStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplateStructuresStep

TEXT = 'Find template chains'¶

ACTIONS = (<StepAction.FIND_HOMOLOGS: 'Find...'>, <StepAction.IMPORT_HOMOLOGS: 'Import...'>)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = 'Must be second and later sequences'¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOOLTIP = '\n If the templates are not already in the tab, you may use either of these\n links to add them. Choose Import to load structures from a file,\n Find to locate them via a BLAST search. When the search results are\n shown, select the structures to import.\n The newly imported structures will be marked in the list as templates,\n with a magenta color behind their structure icons. (If extra structures\n have been imported, select the sequences you want to use.)\n If you need to return to the search results, just click Find\n again.\n '¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HomomultimerTemplateStructuresStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HomomultimerTemplateStructuresStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HomomultimerTemplateStructuresStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HomomultimerTemplateStructuresStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
HomomultimerTemplateStructuresStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

HomomultimerTemplateStructuresStep.scroll(self, int, int)
HomomultimerTemplateStructuresStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HomomultimerTemplateStructuresStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HomomultimerTemplateStructuresStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HomomultimerTemplateStructuresStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HomomultimerTemplateStructuresStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HomomultimerTemplateStructuresStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HomomultimerTemplateStructuresStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HomomultimerTemplateStructuresStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HomomultimerTemplateStructuresStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HomomultimerTemplateStructuresStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._ActionMixin, schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflowStep

TEXT = 'Align sequences'¶

DETAIL_TEXT = 'Run if not auto-aligned when template was imported'¶

ACTIONS = (<StepAction.RUN_ALIGNMENT: 'Run Alignment'>,)¶

TOOLTIP = '\n If the template sequence was not previously aligned to the target, use this\n link to align them. The target must be set as the Reference (first sequence).\n A Multiple Alignment will be run, using the settings from the Alignment\n Pane.\n The reported ID % indicates how well-aligned the sequences are (overall).\n If the value is too low after alignment, the template may not be a good match\n with the target. Click Find Homologs to choose another template from\n the previous search results.\n You can also try to improve the alignment at a critical region of the\n template by selecting the relevant residues and running the alignment again,\n or by manually editing the alignment.\n '¶

alignSeqsRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
BaseAlignSequencesStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

BaseAlignSequencesStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
BaseAlignSequencesStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
BaseAlignSequencesStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
BaseAlignSequencesStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

BaseAlignSequencesStep.scroll(self, int, int)
BaseAlignSequencesStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

BaseAlignSequencesStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

BaseAlignSequencesStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
BaseAlignSequencesStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
BaseAlignSequencesStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

BaseAlignSequencesStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

BaseAlignSequencesStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

BaseAlignSequencesStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

BaseAlignSequencesStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
BaseAlignSequencesStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.AlignSequencesStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep

Sequence alignment step for simple (one-one) homology modeling

optimizeAlignmentRequested¶

initSetOptions()[source]¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

ACTIONS = (<StepAction.RUN_ALIGNMENT: 'Run Alignment'>,)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = 'Run if not auto-aligned when template was imported'¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = 'Align sequences'¶

TOOLTIP = '\n If the template sequence was not previously aligned to the target, use this\n link to align them. The target must be set as the Reference (first sequence).\n A Multiple Alignment will be run, using the settings from the Alignment\n Pane.\n The reported ID % indicates how well-aligned the sequences are (overall).\n If the value is too low after alignment, the template may not be a good match\n with the target. Click Find Homologs to choose another template from\n the previous search results.\n You can also try to improve the alignment at a critical region of the\n template by selecting the relevant residues and running the alignment again,\n or by manually editing the alignment.\n '¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AlignSequencesStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AlignSequencesStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AlignSequencesStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AlignSequencesStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AlignSequencesStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AlignSequencesStep.scroll(self, int, int)
AlignSequencesStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AlignSequencesStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AlignSequencesStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AlignSequencesStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AlignSequencesStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AlignSequencesStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AlignSequencesStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AlignSequencesStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AlignSequencesStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AlignSequencesStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.BatchAlignSequencesStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep

DETAIL_TEXT = 'Align all targets to template'¶

TOOLTIP = '\n Use this link to align all the target sequences to the template sequence.\n The template must be set as the Reference (first sequence).\n If there are any additional sequences in the tab, select the targets before\n aligning.\n A Multiple Alignment will be run, using the settings from the Alignment\n Pane.\n '¶

ACTIONS = (<StepAction.RUN_ALIGNMENT: 'Run Alignment'>,)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = 'Align sequences'¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
BatchAlignSequencesStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

BatchAlignSequencesStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
BatchAlignSequencesStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
BatchAlignSequencesStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
BatchAlignSequencesStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

BatchAlignSequencesStep.scroll(self, int, int)
BatchAlignSequencesStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

BatchAlignSequencesStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

BatchAlignSequencesStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
BatchAlignSequencesStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
BatchAlignSequencesStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

BatchAlignSequencesStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

BatchAlignSequencesStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

BatchAlignSequencesStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

BatchAlignSequencesStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
BatchAlignSequencesStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.AlignStructuresSequencesStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep

TEXT = 'Align structures && sequences'¶

DETAIL_TEXT = 'Align to first template then to target sequence'¶

ACTIONS = (<StepAction.ALIGN_STRUCTURES: 'Align Structures'>, <StepAction.ALIGN_SEQUENCES: 'Align Sequences'>)¶

TOOLTIP = '\n Click the Align Structures link to align the template structures.\n The first of the specified templates will be used as the reference.\n To align on a different structure, reorder the template sequences in the\n list, being careful to restore the previous selection or clear all selection\n before aligning. Only the sequences with magenta behind their structure\n icons will be structurally aligned.\n After the structures are aligned, click the Align Sequences link\n to align all the template sequences to the target sequence. The target must\n be set as the Reference (first sequence). A Multiple Alignment will be run,\n using the settings from the Alignment Pane.\n '¶

alignStructsRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AlignStructuresSequencesStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AlignStructuresSequencesStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AlignStructuresSequencesStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AlignStructuresSequencesStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AlignStructuresSequencesStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AlignStructuresSequencesStep.scroll(self, int, int)
AlignStructuresSequencesStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AlignStructuresSequencesStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AlignStructuresSequencesStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AlignStructuresSequencesStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AlignStructuresSequencesStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AlignStructuresSequencesStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AlignStructuresSequencesStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AlignStructuresSequencesStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AlignStructuresSequencesStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AlignStructuresSequencesStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HomomultimerAlignSequencesStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep

TOOLTIP = '\n If the template sequences were not previously aligned to the target, use\n this link to align them. The target must be the Reference (first sequence).\n If there are any extraneous sequences in the tab, select the templates\n before aligning.\n A Multiple Alignment will be run, using the settings from the Alignment\n Pane.\n '¶

ACTIONS = (<StepAction.RUN_ALIGNMENT: 'Run Alignment'>,)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = 'Run if not auto-aligned when template was imported'¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = 'Align sequences'¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HomomultimerAlignSequencesStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HomomultimerAlignSequencesStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HomomultimerAlignSequencesStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HomomultimerAlignSequencesStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
HomomultimerAlignSequencesStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

HomomultimerAlignSequencesStep.scroll(self, int, int)
HomomultimerAlignSequencesStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HomomultimerAlignSequencesStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HomomultimerAlignSequencesStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HomomultimerAlignSequencesStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HomomultimerAlignSequencesStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HomomultimerAlignSequencesStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HomomultimerAlignSequencesStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HomomultimerAlignSequencesStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HomomultimerAlignSequencesStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HomomultimerAlignSequencesStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.RegionsStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._ActionMixin, schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflowStep

TEXT = 'Define regions on templates'¶

DETAIL_TEXT = 'Second sequence is default template; select regions on other sequences'¶

ACTIONS = (<StepAction.PICK: 'Pick'>,)¶

TOOLTIP = '\n Click the Pick button to define the regions of each template to be\n used in the model. By default, only the first template will be used. It\n will be highlighted in orange across the full width of the target (except\n for structureless residues, which will show a cross-hatch texture).\n To use a different template for a particular region of the model, press and\n drag the mouse along that portion of the intended sequence. The highlight\n will move there, and the panel will report that alternate regions have been\n defined.\n To change templates for a specific region, just press and drag along a\n different template. To start over with the default template, click the\n Reset link on the banner at the top of the tab.\n When you are done picking alternate regions, close the banner or click the\n Pick button again to turn off the special picking state. The orange\n highlights will remain. To modify the regions, click Pick again.\n '¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

defineMappings()[source]¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

EXTRA_STYLESHEET = '\nQLabel#instruction_lbl {\n font-size: 11px;\n}\nQLabel#target_name_lbl, QLabel#identity_lbl {\n color: #76a459;\n font-style: italic;\n}\n\nQLabel#template_name_lbl {\n color: #964f76;\n font-style: italic;\n}\nQToolButton#optimize_btn {\n padding: 0px;\n width: 20px;\n height: 20px;\n image: url(:/msv/icons/optimize.png);\n /* NOTE: image does not appear without border style */\n border: 0px;\n}\nQToolButton#optimize_btn:!enabled {\n image: url(:/msv/icons/optimize-d.png);\n}\nQToolButton#optimize_btn::hover {\n image: url(:/msv/icons/optimize-h.png);\n}\nQToolButton#optimize_btn::pressed {\n image: url(:/msv/icons/optimize-clicked.png);\n}\n\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/chevron-active.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/chevron-disabled.png);\n}\n\nQCheckBox#step_cb::indicator[status="QUESTIONABLE"] {\n image: url(:/msv/icons/warning-question.png);\n}\nQLabel#identity_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n\nQCheckBox#step_cb::indicator[status="FIXABLE"] {\n image: url(:/msv/icons/error-question.png);\n}\nQLabel#identity_lbl[status="FIXABLE"], QLabel#template_name_lbl[status="UNACCEPTABLE"] {\n font-weight: bold;\n color: #ab692c;\n}\n\nQCheckBox#step_cb::indicator[status="UNACCEPTABLE"] {\n image: url(:/msv/icons/error-exclamation.png);\n}\n\nQCheckBox#step_cb::indicator[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-proposed.png);\n}\n/* Put most specific selectors at the bottom */\nQCheckBox#step_cb::indicator:checked[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved.png);\n}\nQCheckBox#step_cb::indicator:checked!enabled[status="ACCEPTABLE"] {\n image: url(:/msv/icons/check-approved-disabled.png);\n}\n\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
RegionsStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

RegionsStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
RegionsStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
RegionsStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
RegionsStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

RegionsStep.scroll(self, int, int)
RegionsStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

RegionsStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

RegionsStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
RegionsStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
RegionsStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

RegionsStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

RegionsStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

RegionsStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

RegionsStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
RegionsStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.OptionalMixin[source]¶

Bases: object

Mixin to add non-bold text (optional) after the step name

initSetUp()[source]¶

initLayOut()[source]¶

class schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.OptionalMixin, schrodinger.application.msv.gui.homology_modeling.steps.AbstractActionStep

TEXT = 'Include ligands && cofactors'¶

DETAIL_TEXT = 'Check to preserve hets; optionally choose waters, constrain proximity'¶

ACTIONS = (<StepAction.CHOOSE_LIGANDS: 'Choose...'>,)¶

EXTRA_STYLESHEET = '\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/toggle-OFF-light.png);\n}\nQCheckBox#step_cb::indicator:checked {\n image: url(:/msv/icons/toggle-ON-light-2.png);\n}\nQCheckBox#step_cb::indicator:hover{\n image: url(:/msv/icons/toggle-hover-light.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/toggle-disabled-light.png);\n}\nQLabel#num_ligs_lbl {\n color: #666666;\n font-style: italic;\n}\nQLabel#num_ligs_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n'¶

ENABLE_ON_CHECK = True¶

TOOLTIP = '\n By default, this option keeps all recognized ligands from the template in\n the model. The number of ligands to be preserved (if greater than zero) is\n displayed above the Choose... link.\n To discard all ligands, cofactors, and waters, click the blue\n checkmark to turn the option off. The icon will turn gray, and the link\n will disable. None of the extra molecules will be preserved.\n To choose specific ligands to preserve, or to keep cofactors or waters,\n click the link and follow the instructions on the popup. Proximity\n constraints may also be set for each preserved ligand.\n '¶

removeLigandConstraintsRequested¶

ligandDialogClosed¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

defineMappings()[source]¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
LigandsStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

LigandsStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
LigandsStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
LigandsStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
LigandsStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

LigandsStep.scroll(self, int, int)
LigandsStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

LigandsStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

LigandsStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
LigandsStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
LigandsStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

LigandsStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

LigandsStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

LigandsStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

LigandsStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
LigandsStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplatesLigandStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep

TOOLTIP = '\n By default, this option keeps all recognized ligands near the highlighted\n regions of the templates in the model. The number of ligands to be\n preserved (if greater than zero) is displayed above the Choose...\n link.\n To discard all ligands, cofactors, and waters, click the blue checkmark to\n turn the option off. The icon will turn gray, and the link will disable.\n None of the extra molecules will be preserved.\n To choose specific ligands to preserve, or to keep specific cofactors or all\n waters near the highlighted regions, click the link and follow the\n instructions on the popup. Proximity constraints may also be set for each\n preserved ligand.\n '¶

ACTIONS = (<StepAction.CHOOSE_LIGANDS: 'Choose...'>,)¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = 'Check to preserve hets; optionally choose waters, constrain proximity'¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = True¶

EXTRA_STYLESHEET = '\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/toggle-OFF-light.png);\n}\nQCheckBox#step_cb::indicator:checked {\n image: url(:/msv/icons/toggle-ON-light-2.png);\n}\nQCheckBox#step_cb::indicator:hover{\n image: url(:/msv/icons/toggle-hover-light.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/toggle-disabled-light.png);\n}\nQLabel#num_ligs_lbl {\n color: #666666;\n font-style: italic;\n}\nQLabel#num_ligs_lbl[status="QUESTIONABLE"] {\n font-weight: bold;\n color: #c7a049;\n}\n'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TEXT = 'Include ligands && cofactors'¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
MultipleTemplatesLigandStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

connectToWorkflow(workflow)¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

MultipleTemplatesLigandStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
MultipleTemplatesLigandStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
MultipleTemplatesLigandStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
MultipleTemplatesLigandStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

MultipleTemplatesLigandStep.scroll(self, int, int)
MultipleTemplatesLigandStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

MultipleTemplatesLigandStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

MultipleTemplatesLigandStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
MultipleTemplatesLigandStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
MultipleTemplatesLigandStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

MultipleTemplatesLigandStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

MultipleTemplatesLigandStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

MultipleTemplatesLigandStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

MultipleTemplatesLigandStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
MultipleTemplatesLigandStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.SettingsStep(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.OptionalMixin, schrodinger.application.msv.gui.homology_modeling.steps.AbstractActionStep

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingSettings

TEXT = 'Change model settings'¶

TOOLTIP = '\n Click the link or the gear icon to change the modeling method, number of\n models, or other modeling and output options. The text under this step\n reflects the current settings.\n The Knowledge-based method is the default. It constructs insertions and\n closes gaps using segments from known structures. This option supports\n multiple models of the structure.\n The Energy-based method uses energy calculations to construct and refine\n missing residues. It is much slower and will only generate a single model,\n but it is also the only method that can be used with binding site proximity\n constraints.\n '¶

ACTIONS = (<StepAction.VIEW_SETTINGS: 'View Settings...'>,)¶

EXTRA_STYLESHEET = '\nQCheckBox#step_cb::indicator {\n image: url(:/msv/icons/settings-light.png);\n}\nQCheckBox#step_cb::indicator[highlight=true] {\n image: url(:/msv/icons/settings-custom-light.png);\n}\nQCheckBox#step_cb::indicator:!enabled {\n image: url(:/msv/icons/settings_disabled-light.png);\n}\nQCheckBox#step_cb::indicator:hover {\n image: url(:/msv/icons/settings-hover-light.png);\n}\n'¶

removeResidueConstraintsRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

defineMappings()[source]¶

@overrides: AbstractStep

Intentionally skipping parent mappings because model class is different

getSignalsAndSlots(model)[source]¶

@overrides: AbstractStep

Intentionally skipping parent slots because model class is different

connectToWorkflow(workflow)[source]¶

Connect this step to the correct workflow instance variables and signals. May override for custom behavior.

Parameters: workflow (AbstractWorkflow) – The parent workflow to link the signals to

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DETAIL_TEXT = ''¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

ENABLE_ON_CHECK = False¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

TOTAL_WIDTH = 300¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
SettingsStep.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

SettingsStep.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Steps never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
SettingsStep.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
SettingsStep.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
SettingsStep.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

SettingsStep.scroll(self, int, int)
SettingsStep.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

SettingsStep.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

SettingsStep.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
SettingsStep.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
SettingsStep.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

SettingsStep.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

SettingsStep.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

SettingsStep.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatus(status=None)¶

Parameters: status (constants.StepState or NoneType) – Status to set on step or None to reset

setStatusText(text)¶: Set text to the status label

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

SettingsStep.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_modeling_step_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_modeling_step_ui.py'>¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
SettingsStep.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.models.mappers.MapperMixin, schrodinger.ui.qt.basewidgets.BaseWidget

Abstract widget containing a sequence of homology modeling AbstractStep.

Subclasses must override STEP_CLASSES.

Subclasses with custom step types should extend _enableReachableSteps() to enable those steps when needed.

Variables: STEP_CLASSES (list[AbstractStep]) – Classes of the steps

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

importSeqAsRefRequested¶

findHomologsRequested¶

importHomologsRequested¶

alignSeqsRequested¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

ligandDialogClosed¶

STEP_CLASSES = []¶

SINGLE_TEMPLATE = False¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

setModel(model)[source]¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

defineMappings()[source]¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

getSignalsAndSlots(model)[source]¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

updateState()[source]¶: Updates the state of the workflow.

makeInitialModel()[source]¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
AbstractWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

AbstractWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
AbstractWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
AbstractWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
AbstractWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

AbstractWorkflow.scroll(self, int, int)
AbstractWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

AbstractWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

AbstractWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
AbstractWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
AbstractWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

AbstractWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

AbstractWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

AbstractWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

AbstractWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
AbstractWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.OneOneWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._AbstractOneOneWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.TemplateStructureStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.AlignSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.SettingsStep'>]¶

optimizeAlignmentRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = True¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
OneOneWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

OneOneWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
OneOneWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
OneOneWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
OneOneWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

OneOneWorkflow.scroll(self, int, int)
OneOneWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

OneOneWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

OneOneWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
OneOneWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
OneOneWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

OneOneWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

OneOneWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

OneOneWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

OneOneWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
OneOneWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.ManyOneWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.BatchTargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.BatchTemplateStructureStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.OtherTargetsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.BatchAlignSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.SettingsStep'>]¶

SINGLE_TEMPLATE = True¶

setAsReferenceRequested¶

importSeqRequested¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
ManyOneWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

ManyOneWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
ManyOneWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
ManyOneWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
ManyOneWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

ManyOneWorkflow.scroll(self, int, int)
ManyOneWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

ManyOneWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

ManyOneWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
ManyOneWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
ManyOneWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

ManyOneWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

ManyOneWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

ManyOneWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

ManyOneWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
ManyOneWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.ChimeraWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplateStructuresStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.AlignStructuresSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.RegionsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplatesLigandStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.SettingsStep'>]¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
ChimeraWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

ChimeraWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
ChimeraWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
ChimeraWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
ChimeraWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

ChimeraWorkflow.scroll(self, int, int)
ChimeraWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

ChimeraWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

ChimeraWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
ChimeraWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
ChimeraWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

ChimeraWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

ChimeraWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

ChimeraWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

ChimeraWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
ChimeraWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HomomultimerWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.HomomultimerTemplateStructuresStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.HomomultimerAlignSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.SettingsStep'>]¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HomomultimerWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HomomultimerWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HomomultimerWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HomomultimerWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
HomomultimerWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

HomomultimerWorkflow.scroll(self, int, int)
HomomultimerWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HomomultimerWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HomomultimerWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HomomultimerWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HomomultimerWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HomomultimerWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HomomultimerWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HomomultimerWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HomomultimerWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HomomultimerWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.ConsensusWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.AbstractWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplateStructuresStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.AlignStructuresSequencesStep'>]¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

INSTRUCTION_TEXT = 'Choose links below as needed to prepare for model creation.\nClick the "info" icon to learn more about a given step.'¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
ConsensusWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

ConsensusWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
ConsensusWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
ConsensusWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
ConsensusWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

ConsensusWorkflow.scroll(self, int, int)
ConsensusWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

ConsensusWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

ConsensusWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
ConsensusWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
ConsensusWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

ConsensusWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

ConsensusWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

ConsensusWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

ConsensusWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
ConsensusWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HeteromultimerOneOneWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._AbstractOneOneWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.TemplateStructureStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.BaseAlignSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.LigandsStep'>]¶

INSTRUCTION_TEXT = None¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = True¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HeteromultimerOneOneWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HeteromultimerOneOneWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HeteromultimerOneOneWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HeteromultimerOneOneWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
HeteromultimerOneOneWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

HeteromultimerOneOneWorkflow.scroll(self, int, int)
HeteromultimerOneOneWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HeteromultimerOneOneWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HeteromultimerOneOneWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HeteromultimerOneOneWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HeteromultimerOneOneWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HeteromultimerOneOneWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HeteromultimerOneOneWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HeteromultimerOneOneWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HeteromultimerOneOneWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HeteromultimerOneOneWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HeteromultimerChimeraWorkflow(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps.ChimeraWorkflow

STEP_CLASSES = [<class 'schrodinger.application.msv.gui.homology_modeling.steps.TargetSequenceStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplateStructuresStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.AlignStructuresSequencesStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.RegionsStep'>, <class 'schrodinger.application.msv.gui.homology_modeling.steps.MultipleTemplatesLigandStep'>]¶

INSTRUCTION_TEXT = None¶

APPLY_LEGACY_STYLESHEET = True¶

APPLY_PANELX_STYLESHEET = False¶

class BtnPos(value)¶

Bases: enum.IntEnum

An enumeration.

Left = 0¶

Middle = 1¶

Right = 2¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

SHOW_AS_WINDOW = False¶

SINGLE_TEMPLATE = False¶

class StdBtn(value)¶

Bases: enum.IntEnum

An enumeration.

Ok = 0¶

Cancel = 1¶

Reset = 2¶

Help = 3¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

property accepted¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

alignSeqsRequested¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HeteromultimerChimeraWorkflow.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(event)¶: Ensures proper handling of OK, Cancel, and [X] button clicks

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

debug()¶

defineMappings()¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

error(*args, **kwargs)¶: Shows a popup error message box. For parameter documentation see messagebox.MessageBox.

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findHomologsRequested¶

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

forgetMessageBoxResponse(key)¶

Forgets any previously saved response that was stored via a save_response_key.

Parameters: key – the key for the response to forget

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

getSignalsAndSlots(model)¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

importHomologsRequested¶

importSeqAsRefRequested¶

info(*args, **kwargs)¶: Shows a popup information message box. For parameter documentation see messagebox.MessageBox.

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initLayOut()¶: @overrides: widgetmixins.InitMixin

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

initSetUp()¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HeteromultimerChimeraWorkflow.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

ligandDialogClosed¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

makeInitialModel()¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization. Workflows never need their own model in isolation anyways.

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

model_class¶: alias of schrodinger.application.msv.gui.homology_modeling.hm_models.HomologyModelingInput

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HeteromultimerChimeraWorkflow.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

question(*args, **kwargs)¶: Shows a popup question message box. For parameter documentation see messagebox.QuestionMessageBox.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HeteromultimerChimeraWorkflow.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

reportValidation(results)¶

Present validation messages to the user. This is an implmentation of the ValidationMixin interface and does not need to be called directly.

This method assumes that error and question methods have been defined in the subclass, as in e.g. widget_mixins.MessageBoxMixin.

Parameters: results (validation.ValidationResults) – Set of validation results generated by validate
Returns: if True, there were no validation errors and the user decided to continue despite any warnings. If False, there was at least one validation error or the user decided to abort when faced with a warning.

resetMappedParams()¶

resize(self, QSize)¶
HeteromultimerChimeraWorkflow.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

run(blocking=False, modal=False, finished_callback=None)¶

Show this widget, while optionally blocking, making the widget window modal, and registering a callback for when the widget is closed again.

Parameters

blocking (bool) – if True, block progress in the calling method until the widget is closed again.
modal (bool) – if True, open this widget as window modal. Otherwise, open this widget as nonmodal.
finished_callback (a callable object) – an object that will be called with no arguments when this widget is closed.

runAllSlots()¶

runValidation(silent=False, validate_children=True, stop_on_fail=True)¶

Runs validation and reports the results (unless run silently).

Parameters

silent (bool) – run without any reporting (i.e. error messages to the user). This is useful if we want to programmatically test validity. Changes return value of this method from ValidationResults to a boolean.
validate_children (bool) – run validation on all child objects. See _validateChildren for documentation on what this entails.
stop_on_fail (bool) – stop validation when first failure is encountered

Returns

if silent is False, returns the validation results. If silent is True, returns a boolean generated by reportValidation.

Return type

ValidationResults or bool

saveGeometry(self) → QByteArray¶

HeteromultimerChimeraWorkflow.scroll(self, int, int)
HeteromultimerChimeraWorkflow.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HeteromultimerChimeraWorkflow.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HeteromultimerChimeraWorkflow.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HeteromultimerChimeraWorkflow.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HeteromultimerChimeraWorkflow.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HeteromultimerChimeraWorkflow.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HeteromultimerChimeraWorkflow.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModel(model)¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HeteromultimerChimeraWorkflow.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HeteromultimerChimeraWorkflow.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowFlagsForRun()¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show()¶: Override the show method to clear and previous value of self.accepted

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMessageBox(*args, **kwargs)¶: Shows a popup message box. For parameter documentation see messagebox.MessageBox.

showMinimized(self)¶

showNormal(self)¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

ui_module = None¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HeteromultimerChimeraWorkflow.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updateState()¶: Updates the state of the workflow.

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

warning(*args, **kwargs)¶: Shows a popup warning message box. For parameter documentation see messagebox.MessageBox.

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶

class schrodinger.application.msv.gui.homology_modeling.steps.HeteromultimerWidget(*args, **kwargs)[source]¶

Bases: schrodinger.application.msv.gui.homology_modeling.steps._ToolTipMixin, schrodinger.models.mappers.MapperMixin, schrodinger.ui.qt.widgetmixins.basicmixins.InitMixin, PyQt5.QtWidgets.QWidget

ui_module = <module 'schrodinger.application.msv.gui.homology_modeling.homology_multiple_view_tabs_ui' from '/scr/buildbot/savedbuilds/2022-2/NB/build-128/internal/lib/python3.8/site-packages/schrodinger/application/msv/gui/homology_modeling/homology_multiple_view_tabs_ui.py'>¶

model_class¶: alias of schrodinger.application.msv.gui.gui_models.MsvGuiModel

importSeqAsRefRequested¶

findHomologsRequested¶

importHomologsRequested¶

alignSeqsRequested¶

alignStructsRequested¶

copySeqsRequested¶

removeLigandConstraintsRequested¶

removeResidueConstraintsRequested¶

ligandDialogClosed¶

TOOLTIP = '\n Select a target or a target and its template and click Copy Selected\n to create a new tab containing those sequences. Repeat this action once per\n available target to create the tabs needed for the modeling.\n If you already have a template for each target sequence, you may instead\n reorder your sequences so that each target is directly above its template.\n Select all of the targets and templates and click Copy Selected once.\n New tabs will be created for each target-template pair.\n In both cases, the newly created tabs will be selected automatically in the\n list below.\n '¶

TABLE_PAGE = 0¶

STEPS_PAGE = 1¶

initSetUp()[source]¶

Creates widget from ui and stores it ui_widget.

Suggested subclass use: create and initialize subwidgets, and connect signals.

initLayOut()[source]¶: @overrides: widgetmixins.InitMixin

setModel(model)[source]¶

Sets the model object for the mapper. Disconnects the old model, if one is set, and connects the new model. Pass in None to have no model set.

Parameters: model – the model instance or None

defineMappings()[source]¶

Override this in the subclass to define mappings. Should return a list of tuples [(<target>, <param>)]. Targets can be:

For common widgets, standard signals and getter/setter methods will be used, as defined in mappers._get_default_access_names().

For more fine-grained custom control, instantiate a TargetSpec object, which allows custom setters, getters, and signals to be specified.

Supplying a slot as the first element of the tuple is equivalent to providing TargetSpec(slot=my_slot).

Note that all target slots are triggered on setModel() as well as in response to the specified signal.

The param is an abstract param reference, e.g. MyModel.my_param.

Example:

def defineMappings(self):
    combo = self.style_combo
    return [(self.name_le, MyModel.name),
            (TargetSpec(combo,
                    getter=combo.currentText,
                    setter=combo.setCurrentText), MyModel.style),
            (self.coord_widget, MyModel.coord),
            (self._onASLTextChanged, MyModel.asl_text)]

getSignalsAndSlots(model)[source]¶

Override this method to specify signal and slot pairs that need to be connected/disconnected whenever the model instance is switched using setModel. The model instance is provided as an argument so that instance-specific signals can be used, but any pairs of signals and slots may be returned from this method.

Returns: a list of 2-tuples where each tuple is a signal, slot pair

makeInitialModel()[source]¶

@overrides: MapperMixin

We just use None as our initial model as a performance optimization.

property mode¶

updateSelectedPages()[source]¶

DrawChildren = 2¶

DrawWindowBackground = 1¶

IgnoreMask = 4¶

class PaintDeviceMetric¶: Bases: int

PdmDepth = 6¶

PdmDevicePixelRatio = 11¶

PdmDevicePixelRatioScaled = 12¶

PdmDpiX = 7¶

PdmDpiY = 8¶

PdmHeight = 2¶

PdmHeightMM = 4¶

PdmNumColors = 5¶

PdmPhysicalDpiX = 9¶

PdmPhysicalDpiY = 10¶

PdmWidth = 1¶

PdmWidthMM = 3¶

class RenderFlag¶: Bases: int

class RenderFlags¶

class RenderFlags(Union[QWidget.RenderFlags, QWidget.RenderFlag]) → None

class RenderFlags(QWidget.RenderFlags) → None

Bases: sip.simplewrapper

__init__(*args, **kwargs)¶

__init__(*args, **kwargs)¶

acceptDrops(self) → bool¶

accessibleDescription(self) → str¶

accessibleName(self) → str¶

actionEvent(self, QActionEvent)¶

actions(self) → List[QAction]¶

activateWindow(self)¶

addAction(self, QAction)¶

addActions(self, Iterable[QAction])¶

adjustSize(self)¶

autoFillBackground(self) → bool¶

backgroundRole(self) → QPalette.ColorRole¶

baseSize(self) → QSize¶

blockSignals(self, bool) → bool¶

changeEvent(self, QEvent)¶

childAt(self, QPoint) → QWidget¶
HeteromultimerWidget.childAt(self, int, int) -> QWidget

childEvent(self, QChildEvent)¶

children(self) → List[QObject]¶

childrenRect(self) → QRect¶

childrenRegion(self) → QRegion¶

clearFocus(self)¶

clearMask(self)¶

close(self) → bool¶

closeEvent(self, QCloseEvent)¶

colorCount(self) → int¶

connectNotify(self, QMetaMethod)¶

contentsMargins(self) → QMargins¶

contentsRect(self) → QRect¶

contextMenuEvent(self, QContextMenuEvent)¶

contextMenuPolicy(self) → Qt.ContextMenuPolicy¶

create(self, window: PyQt5.sip.voidptr = 0, initializeWindow: bool = True, destroyOldWindow: bool = True)¶

createWindowContainer(QWindow, parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = 0) → QWidget¶

cursor(self) → QCursor¶

customContextMenuRequested¶: customContextMenuRequested(self, QPoint) [signal]

customEvent(self, QEvent)¶

deleteLater(self)¶

depth(self) → int¶

destroy(self, destroyWindow: bool = True, destroySubWindows: bool = True)¶

destroyed¶: destroyed(self, object: QObject = None) [signal]

devType(self) → int¶

devicePixelRatio(self) → int¶

devicePixelRatioF(self) → float¶

devicePixelRatioFScale() → float¶

disconnect(QMetaObject.Connection) → bool¶
disconnect(self) → None

disconnectNotify(self, QMetaMethod)¶

dragEnterEvent(self, QDragEnterEvent)¶

dragLeaveEvent(self, QDragLeaveEvent)¶

dragMoveEvent(self, QDragMoveEvent)¶

dropEvent(self, QDropEvent)¶

dumpObjectInfo(self)¶

dumpObjectTree(self)¶

dynamicPropertyNames(self) → List[QByteArray]¶

effectiveWinId(self) → PyQt5.sip.voidptr¶

ensurePolished(self)¶

enterEvent(self, QEvent)¶

event(self, QEvent) → bool¶

eventFilter(self, QObject, QEvent) → bool¶

find(PyQt5.sip.voidptr) → QWidget¶

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject¶
findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]¶
findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]
findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

focusInEvent(self, QFocusEvent)¶

focusNextChild(self) → bool¶

focusNextPrevChild(self, bool) → bool¶

focusOutEvent(self, QFocusEvent)¶

focusPolicy(self) → Qt.FocusPolicy¶

focusPreviousChild(self) → bool¶

focusProxy(self) → QWidget¶

focusWidget(self) → QWidget¶

font(self) → QFont¶

fontInfo(self) → QFontInfo¶

fontMetrics(self) → QFontMetrics¶

foregroundRole(self) → QPalette.ColorRole¶

frameGeometry(self) → QRect¶

frameSize(self) → QSize¶

geometry(self) → QRect¶

getContentsMargins(self) → Tuple[int, int, int, int]¶

getModel()¶

grab(self, rectangle: QRect = QRect(QPoint(0, 0), QSize(- 1, - 1))) → QPixmap¶

grabGesture(self, Qt.GestureType, flags: Union[Qt.GestureFlags, Qt.GestureFlag] = Qt.GestureFlags())¶

grabKeyboard(self)¶

grabMouse(self)¶
grabMouse(self, Union[QCursor, Qt.CursorShape]) → None

grabShortcut(self, Union[QKeySequence, QKeySequence.StandardKey, str, int], context: Qt.ShortcutContext = Qt.WindowShortcut) → int¶

graphicsEffect(self) → QGraphicsEffect¶

graphicsProxyWidget(self) → QGraphicsProxyWidget¶

hasFocus(self) → bool¶

hasHeightForWidth(self) → bool¶

hasMouseTracking(self) → bool¶

hasTabletTracking(self) → bool¶

height(self) → int¶

heightForWidth(self, int) → int¶

heightMM(self) → int¶

hide(self)¶

hideEvent(self, QHideEvent)¶

inherits(self, str) → bool¶

initFinalize()¶: Suggested subclass use: perform any remaining initialization.

initPainter(self, QPainter)¶

initSetDefaults()¶: @overrides: widgetmixins.InitMixin

initSetOptions()¶: Suggested subclass use: set instance variables, excluding layouts and subwidgets. Also use here to (optionally) apply the legacy stylesheet spacing settings (PANEL-19101).

inputMethodEvent(self, QInputMethodEvent)¶

inputMethodHints(self) → Qt.InputMethodHints¶

inputMethodQuery(self, Qt.InputMethodQuery) → Any¶

HeteromultimerWidget.insertAction(self, QAction, QAction)

insertActions(self, QAction, Iterable[QAction])¶

installEventFilter(self, QObject)¶

isActiveWindow(self) → bool¶

isAncestorOf(self, QWidget) → bool¶

isEnabled(self) → bool¶

isEnabledTo(self, QWidget) → bool¶

isFullScreen(self) → bool¶

isHidden(self) → bool¶

isLeftToRight(self) → bool¶

isMaximized(self) → bool¶

isMinimized(self) → bool¶

isModal(self) → bool¶

isRightToLeft(self) → bool¶

isSignalConnected(self, QMetaMethod) → bool¶

isVisible(self) → bool¶

isVisibleTo(self, QWidget) → bool¶

isWidgetType(self) → bool¶

isWindow(self) → bool¶

isWindowModified(self) → bool¶

isWindowType(self) → bool¶

keyPressEvent(self, QKeyEvent)¶

keyReleaseEvent(self, QKeyEvent)¶

keyboardGrabber() → QWidget¶

killTimer(self, int)¶

layout(self) → QLayout¶

layoutDirection(self) → Qt.LayoutDirection¶

leaveEvent(self, QEvent)¶

locale(self) → QLocale¶

logicalDpiX(self) → int¶

logicalDpiY(self) → int¶

lower(self)¶

mapFrom(self, QWidget, QPoint) → QPoint¶

mapFromGlobal(self, QPoint) → QPoint¶

mapFromParent(self, QPoint) → QPoint¶

mapTo(self, QWidget, QPoint) → QPoint¶

mapToGlobal(self, QPoint) → QPoint¶

mapToParent(self, QPoint) → QPoint¶

mappedParams()¶: Return a list of the abstract params that are mapped to.

mask(self) → QRegion¶

maximumHeight(self) → int¶

maximumSize(self) → QSize¶

maximumWidth(self) → int¶

metaObject(self) → QMetaObject¶

metric(self, QPaintDevice.PaintDeviceMetric) → int¶

minimumHeight(self) → int¶

minimumSize(self) → QSize¶

minimumSizeHint(self) → QSize¶

minimumWidth(self) → int¶

property model¶

mouseDoubleClickEvent(self, QMouseEvent)¶

mouseGrabber() → QWidget¶

mouseMoveEvent(self, QMouseEvent)¶

mousePressEvent(self, QMouseEvent)¶

mouseReleaseEvent(self, QMouseEvent)¶

move(self, QPoint)¶
HeteromultimerWidget.move(self, int, int) -> None

moveEvent(self, QMoveEvent)¶

moveToThread(self, QThread)¶

nativeEvent(self, Union[QByteArray, bytes, bytearray], sip.voidptr) → Tuple[bool, int]¶

nativeParentWidget(self) → QWidget¶

nextInFocusChain(self) → QWidget¶

normalGeometry(self) → QRect¶

objectName(self) → str¶

objectNameChanged¶: objectNameChanged(self, str) [signal]

overrideWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

overrideWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

paintEngine(self) → QPaintEngine¶

paintEvent(self, QPaintEvent)¶

paintingActive(self) → bool¶

palette(self) → QPalette¶

parent(self) → QObject¶

parentWidget(self) → QWidget¶

physicalDpiX(self) → int¶

physicalDpiY(self) → int¶

pos(self) → QPoint¶

previousInFocusChain(self) → QWidget¶

property(self, str) → Any¶

pyqtConfigure(...)¶: Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

raise_(self)¶

receivers(self, PYQT_SIGNAL) → int¶

rect(self) → QRect¶

releaseKeyboard(self)¶

releaseMouse(self)¶

releaseShortcut(self, int)¶

removeAction(self, QAction)¶

removeEventFilter(self, QObject)¶

render(self, QPaintDevice, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren))¶
render(self, QPainter, targetOffset: QPoint = QPoint(), sourceRegion: QRegion = QRegion(), flags: Union[QWidget.RenderFlags, QWidget.RenderFlag] = QWidget.RenderFlags(QWidget.RenderFlag.DrawWindowBackground | QWidget.RenderFlag.DrawChildren)) → None

repaint(self)¶
HeteromultimerWidget.repaint(self, int, int, int, int) -> None
repaint(self, QRect) → None
repaint(self, QRegion) → None

resetMappedParams()¶

resize(self, QSize)¶
HeteromultimerWidget.resize(self, int, int) -> None

resizeEvent(self, QResizeEvent)¶

restoreGeometry(self, Union[QByteArray, bytes, bytearray]) → bool¶

runAllSlots()¶

saveGeometry(self) → QByteArray¶

HeteromultimerWidget.scroll(self, int, int)
HeteromultimerWidget.scroll(self, int, int, QRect) -> None

sender(self) → QObject¶

senderSignalIndex(self) → int¶

setAcceptDrops(self, bool)¶

setAccessibleDescription(self, str)¶

setAccessibleName(self, str)¶

setAttribute(self, Qt.WidgetAttribute, on: bool = True)¶

setAutoFillBackground(self, bool)¶

setBackgroundRole(self, QPalette.ColorRole)¶

HeteromultimerWidget.setBaseSize(self, int, int)
setBaseSize(self, QSize) → None¶

HeteromultimerWidget.setContentsMargins(self, int, int, int, int)
setContentsMargins(self, QMargins) → None¶

setContextMenuPolicy(self, Qt.ContextMenuPolicy)¶

setCursor(self, Union[QCursor, Qt.CursorShape])¶

setDefaults()¶: @overrides: af2.App

setDisabled(self, bool)¶

setEnabled(self, bool)¶

setFixedHeight(self, int)¶

setFixedSize(self, QSize)¶
HeteromultimerWidget.setFixedSize(self, int, int) -> None

setFixedWidth(self, int)¶

setFocus(self)¶
setFocus(self, Qt.FocusReason) → None

setFocusPolicy(self, Qt.FocusPolicy)¶

setFocusProxy(self, QWidget)¶

setFont(self, QFont)¶

setForegroundRole(self, QPalette.ColorRole)¶

setGeometry(self, QRect)¶
HeteromultimerWidget.setGeometry(self, int, int, int, int) -> None

setGraphicsEffect(self, QGraphicsEffect)¶

setHidden(self, bool)¶

setInputMethodHints(self, Union[Qt.InputMethodHints, Qt.InputMethodHint])¶

setLayout(self, QLayout)¶

setLayoutDirection(self, Qt.LayoutDirection)¶

setLocale(self, QLocale)¶

setMask(self, QBitmap)¶
setMask(self, QRegion) → None

setMaximumHeight(self, int)¶

HeteromultimerWidget.setMaximumSize(self, int, int)
setMaximumSize(self, QSize) → None¶

setMaximumWidth(self, int)¶

setMinimumHeight(self, int)¶

HeteromultimerWidget.setMinimumSize(self, int, int)
setMinimumSize(self, QSize) → None¶

setMinimumWidth(self, int)¶

setModelWithoutSlots(model)¶: This is called when this MapperMixin is a sub-widget of a parent MapperMixin. Since the slots will all be called at the end of the parent setModel, they shouldn’t be called during the sub-widget’s setModel.

setMouseTracking(self, bool)¶

setObjectName(self, str)¶

setPalette(self, QPalette)¶

setParent(self, QWidget)¶
setParent(self, QWidget, Union[Qt.WindowFlags, Qt.WindowType]) → None

setProperty(self, str, Any) → bool¶

setShortcutAutoRepeat(self, int, enabled: bool = True)¶

setShortcutEnabled(self, int, enabled: bool = True)¶

HeteromultimerWidget.setSizeIncrement(self, int, int)
setSizeIncrement(self, QSize) → None¶

setSizePolicy(self, QSizePolicy)¶
setSizePolicy(self, QSizePolicy.Policy, QSizePolicy.Policy) → None

setStatusTip(self, str)¶

setStyle(self, QStyle)¶

setStyleSheet(self, str)¶

HeteromultimerWidget.setTabOrder(QWidget, QWidget)

setTabletTracking(self, bool)¶

setToolTip(self, str)¶

setToolTipDuration(self, int)¶

setUpdatesEnabled(self, bool)¶

setVisible(self, bool)¶

setWhatsThis(self, str)¶

setWidgetLayout()¶: Set the widget layout

setWindowFilePath(self, str)¶

setWindowFlag(self, Qt.WindowType, on: bool = True)¶

setWindowFlags(self, Union[Qt.WindowFlags, Qt.WindowType])¶

setWindowIcon(self, QIcon)¶

setWindowIconText(self, str)¶

setWindowModality(self, Qt.WindowModality)¶

setWindowModified(self, bool)¶

setWindowOpacity(self, float)¶

setWindowRole(self, str)¶

setWindowState(self, Union[Qt.WindowStates, Qt.WindowState])¶

setWindowTitle(self, str)¶

setting_model()¶

sharedPainter(self) → QPainter¶

show(self)¶

showEvent(self, QShowEvent)¶

showFullScreen(self)¶

showMaximized(self)¶

showMinimized(self)¶

showNormal(self)¶

showToolTip()¶

signalsBlocked(self) → bool¶

size(self) → QSize¶

sizeHint(self) → QSize¶

sizeIncrement(self) → QSize¶

sizePolicy(self) → QSizePolicy¶

stackUnder(self, QWidget)¶

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int¶

staticMetaObject = <PyQt5.QtCore.QMetaObject object>¶

statusTip(self) → str¶

style(self) → QStyle¶

styleSheet(self) → str¶

tabletEvent(self, QTabletEvent)¶

testAttribute(self, Qt.WidgetAttribute) → bool¶

thread(self) → QThread¶

timerEvent(self, QTimerEvent)¶

toolTip(self) → str¶

toolTipDuration(self) → int¶

tr(self, str, disambiguation: str = None, n: int = - 1) → str¶

underMouse(self) → bool¶

ungrabGesture(self, Qt.GestureType)¶

unsetCursor(self)¶

unsetLayoutDirection(self)¶

unsetLocale(self)¶

update(self)¶
update(self, QRect) → None
update(self, QRegion) → None
HeteromultimerWidget.update(self, int, int, int, int) -> None

updateGeometry(self)¶

updateMicroFocus(self)¶

updatesEnabled(self) → bool¶

visibleRegion(self) → QRegion¶

whatsThis(self) → str¶

wheelEvent(self, QWheelEvent)¶

width(self) → int¶

widthMM(self) → int¶

winId(self) → PyQt5.sip.voidptr¶

window(self) → QWidget¶

windowFilePath(self) → str¶

windowFlags(self) → Qt.WindowFlags¶

windowHandle(self) → QWindow¶

windowIcon(self) → QIcon¶

windowIconChanged¶: windowIconChanged(self, QIcon) [signal]

windowIconText(self) → str¶

windowIconTextChanged¶: windowIconTextChanged(self, str) [signal]

windowModality(self) → Qt.WindowModality¶

windowOpacity(self) → float¶

windowRole(self) → str¶

windowState(self) → Qt.WindowStates¶

windowTitle(self) → str¶

windowTitleChanged¶: windowTitleChanged(self, str) [signal]

windowType(self) → Qt.WindowType¶

x(self) → int¶

y(self) → int¶