schrodinger.application.combiglide.connection_storage module

schrodinger.application.combiglide.connection_storage.get_connection_color(i)

Return the appropriate color for the i-th connection

Parameters

i (int) – The connection number to get colors for

Returns

The appropriate color, formatted as a list of three integers between 0 and 255

Return type

list

schrodinger.application.combiglide.connection_storage.get_color_list(i)

Return a list of colors from 0 to i

Parameters

i (int) – The connection number to get colors up to

Returns

A list of appropriate colors, where each color is formatted as a list of three integers between 0 and 255

Return type

list

schrodinger.application.combiglide.connection_storage.get_flat_color_list(i)

Return a flat list of colors from 0 to i

Parameters

i (int) – The connection number to get colors up to

Returns

A flat list of appropriate colors of length 3*i

Return type

list

schrodinger.application.combiglide.connection_storage.extend_connection_colors(idx)

Make sure that connection_colors is at least as long as the requested length

Parameters

i (int) – The desired length of connection_colors

schrodinger.application.combiglide.connection_storage.gen_random_color()

Generate a new random color

Returns

A random color, formatted as a list of three integers between 0 and 255

Return type

list

schrodinger.application.combiglide.connection_storage.reset_colors()

Reset the connection_colors list back to its original state. Intended for use in unit testing

class schrodinger.application.combiglide.connection_storage.ConnectionStorage

Bases: PyQt5.QtCore.QObject

This class is used to store the data of the current connection table.

__init__()

reset()

collectionChanged()

hasChanged()

changesSaved()

addPair(bp, name='', csize=0, minlink=0, maxlink=0, cfile=0, bondToH=False, selected=False)

Adds a bond pair to the list of bond pairs, and also creates a more or less empty data line for that data. Data in array: [Attachment name, collection size, min linkers, max linkers, collection file, table row]

bondPair(a1, a2)

switchPair(bp, newbp=False)

changePair(oldbp, newbp)

deletePair(bp)

setData(bp, name, csize, minlink, maxlink, cfile, row, bondToH, selected)

setConnectionName(bp, cname)

setConnectionSize(bp, csize)

setConnectionMinLink(bp, minlink)

setConnectionMaxLink(bp, maxlink)

setConnectionFile(bp, cfile)

setRow(bp, row)

setSelected(bp, selected)

getConnectionName(bp)

getConnectionSize(bp)

getConnectionMinLink(bp)

getConnectionMaxLink(bp)

getConnectionFile(bp)

getRow(bp)

bondToH(bp)

getSelected(bp)

clearSelected()

size()

getPairFromRow(num)

getBondColorList()

containsMultipleCores()

getConnectionColor(i)

Return the appropriate connection color for the i-th connection

Parameters

i (int) – The connection number to get the color for

Returns

The appropriate color, formatted as a list of three integers between 0 and 255

Return type

list

setIgnorePair(bp)

removeIgnorePair()

getBondList()

getBondListWithIgnored()

getAtomList()

getCompleteBondList()

getAtomColorList()

blockSignals(self, bool) → bool

childEvent(self, QChildEvent)

children(self) → List[QObject]

connectNotify(self, QMetaMethod)

customEvent(self, QEvent)

deleteLater(self)

destroyed

destroyed(self, object: QObject = None) [signal]

disconnect(QMetaObject.Connection) → bool

disconnect(self) → None

disconnectNotify(self, QMetaMethod)

dumpObjectInfo(self)

dumpObjectTree(self)

dynamicPropertyNames(self) → List[QByteArray]

event(self, QEvent) → bool

eventFilter(self, QObject, QEvent) → bool

findChild(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChild(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → QObject

findChildren(self, type, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, Tuple, name: str = '', options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) → List[QObject]

inherits(self, str) → bool

installEventFilter(self, QObject)

isSignalConnected(self, QMetaMethod) → bool

isWidgetType(self) → bool

isWindowType(self) → bool

killTimer(self, int)

metaObject(self) → QMetaObject

moveToThread(self, QThread)

objectName(self) → str

objectNameChanged

objectNameChanged(self, str) [signal]

parent(self) → QObject

property(self, str) → Any

pyqtConfigure(...)

Each keyword argument is either the name of a Qt property or a Qt signal. For properties the property is set to the given value which should be of an appropriate type. For signals the signal is connected to the given value which should be a callable.

receivers(self, PYQT_SIGNAL) → int

removeEventFilter(self, QObject)

sender(self) → QObject

senderSignalIndex(self) → int

setObjectName(self, str)

setParent(self, QObject)

setProperty(self, str, Any) → bool

signalsBlocked(self) → bool

startTimer(self, int, timerType: Qt.TimerType = Qt.CoarseTimer) → int

staticMetaObject = <PyQt5.QtCore.QMetaObject object>

thread(self) → QThread

timerEvent(self, QTimerEvent)

tr(self, str, disambiguation: str = None, n: int = - 1) → str