WaterMap

State-of-the-art, structure-based method for assessing the energetics of water-solvating ligand binding sites for ligand optimization

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Discover new possibilities for ligand design

WaterMap is an advanced solution for the reliable calculation of positions and energies of solvating water in a protein binding pocket. By providing key insights to guide ligand design and optimization, WaterMap is a high impact solution for structure-based drug discovery, as demonstrated in several successful drug discovery programs now in clinical development.

Key Capabilities

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Predict the location and thermodynamic potential of high-energy, displaceable water molecules in the binding site to guide drug design
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Gain insights into the pocket properties and hydrophobic forces driving the binding of small molecules
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Visualize hydration sites for an easy method of interpreting SAR and gain insights to improve potency and selectivity
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Apply WaterMap to a wide range of systems including enzymes, GPCRs, bromodomains, nucleic acids, and protein-protein interfaces
Case StudyDiscovery of a novel, potent ACC inhibitor using WaterMap

Computationally-guided design and assessment of water energetics in the binding site

Discovery of a novel, potent ACC inhibitor using WaterMap

See how Nimbus Therapeutics identified potent, selective inhibitors using a virtual screening workflow guided by hydration energetics.

read the case study

Publications

Browse the list of peer-reviewed publications using Schrödinger technology in related application areas.

Life Science Webinar

Japanese: Schrödinger デジタル創薬セミナー Into the Clinic ~計算化学がもたらす創薬プロセスの変貌~

Mucosa-associated Lymphoid Tissue Lymphoma Translocation Protein 1 (MALT1) is a genetically validated target for the treatment of diseases associated with lymphocyte regulation.

Life Science Case Study

Discovery of a novel, potent ACC inhibitor driven by computationally-guided design and assessment of water energetics in the binding site

Life Science Case Study

Hit to development candidate in 10 months: Rapid discovery of a novel, potent MALT1 inhibitor

Life Science Webinar

The Predict-First Paradigm: How Digital Chemistry is Changing Drug Discovery

In this webinar, we walk through the digital chemistry strategy used by Schrödinger’s Therapeutics Group, which has led to several successful clinical-stage drug candidates.

Life Science Webinar

Chinese: 应用薛定谔计算平台加速SGR-1505,治疗复发或难治性B细胞淋巴瘤的MALT1异生抑制剂

MALT1 被认为是几种亚型非霍奇金 B 细胞淋巴瘤和慢性淋巴细胞白血病 (CLL) 的潜在治疗靶点。

Life Science White Paper

Understanding Water Interaction Leads to the Discovery of a New Class of Reversible USP7 Inhibitors that Suppress Tumor Growth

Life Science Webinar

Schrödinger デジタル創薬セミナー: Into the Clinic ~計算化学がもたらす創薬プロセスの変貌~ 第15回

Water matters: Enhancing early drug discovery with insights from water energetics

Life Science Webinar

Water matters: Enhancing early drug discovery with insights from water energetics

In this webinar, we discuss the impact of two technologies that leverage explicit water energetics in the binding pocket to enhance drug design—WaterMap and Glide WS.

Life Science Webinar

Schrödinger デジタル創薬セミナー: Into the Clinic~計算化学がもたらす創薬プロセスの変貌~第12回

Accelerated In silico Discovery of SGR-1505: a Potent MALT1 Allosteric Inhibitor for the Treatment of Mature B-cell Malignancies

Life Science Webinar

The Predict-First Paradigm: How Digital Chemistry is Shaping the Future of Drug Discovery 预测优先范式: 数字化学如何塑造药物发现的未来

Documentation & Tutorials

Get answers to common questions and learn best practices for using Schrödinger’s software.

Life Science Documentation

Learning Path: Computational Target Analysis

A structured overview of tools and workflows for analyzing and understanding the behavior of target proteins.

Life Science Tutorial

Identifying Binding Site Requirements and Lead Optimization with WaterMap

Examine results from WaterMap and WM/MM scoring to identify unstable waters and evaluate ligand binding.

Life Science Tutorial

Target Analysis with SiteMap and WaterMap

Identify potential active sites on a receptor.

Related Products

Learn more about the related computational technologies available to progress your research projects.

Glide

Industry-leading ligand-receptor docking solution

FEP+

High-performance free energy calculations for drug discovery

LiveDesign

Your complete digital molecular design lab

Maestro

Complete modeling environment for your molecular discovery

Training & Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

Tutorials

Learn how to deploy the technology and best practices of Schrödinger software for your project success. Find training resources, tutorials, quick start guides, videos, and more.