Desmond for Materials Science

High-performance molecular dynamics (MD) engine providing high scalability, throughput, and scientific accuracy

Desmond for Materials Science

Understand and predict key properties of materials with fast, accurate molecular dynamics

Desmond is a GPU-powered high-performance molecular dynamics (MD) engine for predicting bulk properties of materials, such as thermophysical properties, elastic constants, stress/strain relationships, diffusion coefficients, viscosity, persistence length, free energy of solvation, and more. Desmond also characterizes structure and properties in complex systems involving non-equilibrium systems as well as interfaces or self-assembled structures.

Comprehensive molecular dynamics capabilities

Speed time to market of new catalysts
Exceptional performance

Achieve exceptional throughput on commodity Linux clusters with both typical and high-end networks. Improve computing speed by 100x on general-purpose GPU (GPGPU) versus single CPU.

Superior accuracy
Superior accuracy

Constructed with a focus on numerical accuracy, stability, and rigor. Enables the simulation of large scale features of nanometers to micron size over time scales of picoseconds to microseconds.

Trusted energetics
Trusted energetics

Provides a robust framework for the calculation of energies and forces for atomistic and coarse grained force field models. Compatible with chemistries commonly used in both biomolecular and condensed-matter research.

Realistic simulations
Realistic simulations

Perform explicit solvent simulations with periodic boundary conditions using cubic, orthorhombic, truncated octahedron, rhombic dodecahedron, and arbitrary triclinic simulation boxes with careful attention to the efficient and accurate calculation of long-range electrostatics, and can be used to model explicit membrane systems, complex mixtures, polymers, and interfaces under various conditions.

Easy-to-use interface
Easy-to-use interface

Support automated simulation setup, including multistage MD simulations with built-in simulation protocols, prediction of equation of states (EOS) at multiple temperatures, and prediction of dynamic responses at non-equilibrium states. An intuitive interface provides intelligent default settings and allows for rapid setup of computational experiments. 

Powerful analysis tools
Powerful analysis tools

Visualize and examine computed results within the same MS Maestro modeling environment that connects to a comprehensive suite of modeling tools from quantum mechanics to machine learning.

Case Studies

Discover how Schrödinger technology is being used to solve real-world research challenges.

Molecular dynamics and coarse-grained simulations facilitate design new eco-friendly cosmetic formulations

Prediction of moisture adsorption and effects on amorphous starch

Molecular dynamics simulations accelerate the development and optimization of recyclable tire materials

Broad applications across materials science research areas

Get more from your ideas by harnessing the power of large-scale chemical exploration and accurate in silico molecular prediction.

Polymeric Materials
Pharmaceutical Formulations & Delivery
Energy Capture & Storage
Organic Electronics
Consumer Packaged Goods

Official NVIDIA Partner

Schrödinger has a strategic partnership with NVIDIA to optimize our computational drug discovery platform for NVIDIA GPU technology.

Documentation & Tutorials

Get answers to common questions and learn best practices for using Schrödinger’s software.

Life Science
Understanding and Visualizing Target Flexibility

Evaluate PDB temperature factors, align binding sites, and use MD to identify flexibility.

Life Science
Introduction to MD Trajectory Analysis with Desmond

Analyze an all-atom Desmond MD trajectory to study protein-ligand interactions.

Materials Science
Adsorption of Panthenol on Skin with All-Atom Molecular Dynamics

Study the adsorption of panthenol on a skin lipid bilayer surface using all atom molecular simulations.

Materials Science
Building a Semicrystalline Polymer

Build basic semicrystalline polymer models.

Materials Science
Solid Electrolyte Interphase Calculations

Learn to perform and analyze solid electrolyte interphase calculations

Life Science
Introduction to MD Simulations with Desmond

Prepare, run, and perform simple analysis on an all-atom MD simulation with Desmond.

Materials Science
Building a Coarse-Grained Skin Model using Martini Force Field

Build a coarse-grained model of a hydrated skin bilayer with Martini force field parameters using two different methods

Materials Science
Anisotropic Diffusion
Materials Science
Electroporation

Learn to use the electroporation calculations panel to apply an electric field to bacterial membranes to calculate pore formation using molecular dynamics simulations.

Materials Science
Calculating Surfactant Tilt and Electrostatic Potential of a Bilayer System

Learn to build a bilayer surfactant system with the structured liquid builder and then calculate surfactant tilt and rotation angles as well as charge density and electrostatic potential.

Related Products

Learn more about the related computational technologies available to progress your research projects.

MS Maestro

Complete modeling environment for your materials discovery

OPLS4 & OPLS5 Force Field

A modern, comprehensive force field for accurate molecular simulations

MS CG

Efficient coarse-grained (CG) molecular dynamics (MD) simulations for large systems over long time scales

MS Morph

Efficient modeling tool for organic crystal habit prediction

MS Penetrant Loading

Molecular dynamics (MD) modeling for predicting water loading and small molecule gas adsorption capacity of a condensed system

MS Transport

Efficient molecular dynamics (MD) simulation tool for predicting liquid viscosity and diffusions of atoms and molecules

Publications

Browse the list of peer-reviewed publications using Schrödinger technology in related application areas.

Materials Science
Evaluating the Binding Potential and Stability of Drug-like Compounds with the Monkeypox Virus VP39 Protein Using Molecular Dynamics Simulations and Free Energy Analysis
Materials Science
Predicting Drug-Polymer Compatibility in Amorphous Solid Dispersions by MD Simulation: On the Trap of Solvation Free Energie
Materials Science
Designing the Next Generation of Polymers with Machine Learning and Physics-Based Models
Materials Science
Modelling of Prednisolone Drug Encapsulation in Poly Lactic-co-Glycolic Acid Polymer Carrier Using Molecular Dynamics Simulations
Materials Science
Cu-TiO2/Zeolite/PMMA Tablets for Efficient Dye Removal: A Study of Photocatalytic Water Purification
Materials Science
Elucidation of the sweetening mechanism of sweet orange fruit aroma compounds on sucrose solution using sensory evaluation, electronic tongue, molecular docking, and molecular dynamics simulation
Materials Science
Newly Developed Semi-Solid Formulations Containing Mellilotus officinalis Extract: Characterization, Assessment of Stability, Safety, and Anti-Inflammatory Activity
Materials Science
Strengthening an Intramolecular Non-Classical Hydrogen Bond to Get in Shape for Binding
Materials Science
Ciprofloxacin and Azithromycin Antibiotics Interactions with Bilayer Ionic Surfactants: A Molecular Dynamics Study
Materials Science
Complexation mechanisms of aqueous amylose: Molecular dynamics study using 3-pentadecylphenol

Training & Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

Tutorials

Learn how to deploy the technology and best practices of Schrödinger software for your project success. Find training resources, tutorials, quick start guides, videos, and more.