Contact Us
Background

Free learning resources

Quickly learn how to integrate Schrödinger technology into your research. From overviews to deep dives, you can find information about applications, workflows, and analysis here.

Getting Going with Maestro Video Life Science
Getting Going with Maestro

A free video series introducing the basics of using Maestro.

Learn More
Getting Going with Maestro BioLuminate Video Life Science
Getting Going with Maestro BioLuminate

A free video series introducing the basics of using Maestro Bioluminate.

Learn More
Documentation Documentation Life Science
Documentation

Comprehensive reference documentation covering panels and workflows.

Learn More
Filters

Tutorials

Self-guided step-by-step introductions to various workflows with example files for getting comfortable with Schrödinger tools.

  • Tutorial
A Chemist’s Guide to Maestro

Basic Maestro tasks useful for medicinal chemists during idea generation and lead optimization.

Learn More
  • Tutorial
BACE1 Inhibitor Design Using Free Energy Perturbation

Prepare, run, and analyze a free energy perturbation (FEP) simulation for a series of BACE1 inhibitors using FEP+.

Learn More
  • Tutorial
Antibody Visualization and Modeling in BioLuminate

Visualize, build, and evaluate antibody models, analyze an antibody for various characteristics, dock an antigen to an antibody.

Learn More
  • Tutorial
Chimeric Homology Modeling Using the Multiple Sequence Viewer/Editor

Build a chimeric homology model using the Multiple Sequence Viewer/Editor (MSV).

Learn More
  • Tutorial
Introduction to Structure Preparation and Visualization

Preparation and visualization of ligand and protein structures in Maestro.

Learn More
  • Tutorial
Introduction to BioLuminate and the Multiple Sequence Viewer/Editor

Prepare and visualize an enzyme, analyze the sequence for residue conservation, and build a homology model with the MSV.

Learn More
  • Tutorial
Building Homology Models with the Multiple Sequence Viewer/Editor

Build and refine a homology model with the MSV.

Learn More
  • Tutorial
Batch Homology Modeling Using the Multiple Sequence Viewer/Editor

Build multiple homology models using a single template with the MSV.

Learn More
  • Tutorial
WaterMap-Guided Lead Optimization with the Ligand Designer

Displace an unstable water an optimize a hit molecule with the Ligand Designer.

Learn More
  • Tutorial
Forming Protein-Ligand Interactions with the Ligand Designer

Form protein-ligand interactions and optimize a hit molecule with the Ligand Designer.

Learn More
  • Tutorial
Training and Evaluating ADMET Models with DeepAutoQSAR

Build and test two models for predicting aqueous solubility using a large dataset

Learn More
  • Tutorial
Using IFD-MD on a Membrane-bound protein

Set up a membrane-bound protein for IFD-MD and visualize the results.

Learn More
  • Tutorial
Structure-Based Virtual Screening using Glide

Prepare receptor grids for docking, dock molecules and examine the docked poses

Learn More
  • Tutorial
Re-scoring Docked Ligands with MM-GBSA

Optimize binding poses and re-score results of a small virtual screen

Learn More
  • Tutorial
Conformational Analysis for Small Molecules Using MacroModel and ConfGen

Investigate torsional profiles for related small molecules and how conformation affects intra- and intermolecular interactions.

Learn More
  • Tutorial
Target Analysis with SiteMap and WaterMap

Identify potential active sites on a receptor

Learn More
  • Tutorial
Identifying Binding Site Requirements and Lead Optimization with WaterMap

Examine results from WaterMap and WM/MM scoring to identify unstable waters and evaluate ligand binding.

Learn More
  • Tutorial
Membrane-Bound FEP+ with A2A

Prepare, run, and analyze a free energy perturbation (FEP) simulation with a membrane-bound protein for a series of A2A inhibitors using FEP+.

Learn More
  • Tutorial
Enumeration Tools for Library Design

Use enumeration tools to design libraries for lead optimization of a CDK2 inhibitor

Learn More
  • Tutorial
Using IFD-MD on a Covalently Bound Ligand

Set up IFD-MD for a covalently bound ligand and visualize the results.

Learn More
View All Tutorials

Videos

Short video overviews of specific introductory and scientific topics, including summaries of new release features.

  • Video
Setting up a Maestro Project

The first video in the Getting Going with Maestro Video Series: the working directory, saving a project, and customizing mouse actions.

Learn More
  • Video
Importing and Rendering Structures in Maestro

The second video in the Getting Going with Maestro Video Series: importing structures from the Protein Data Bank (PDB), selection and inclusion, styling.

Learn More
  • Video
Interacting with Objects and Applications in Maestro

The third video in the Getting Going with Maestro Video Series: using right-clicks in Maestro, favorites toolbar, navigating Tasks.

Learn More
  • Video
Modifying Ligands in 2D and Ligand Alignments in Maestro

The fourth video in the Getting Going with Maestro Video Series: 2D Sketcher, ligand alignment.

Learn More
  • Video
Modifying Compounds in 3D in Maestro

The fifth video in the Getting Going with Maestro Video Series: designing new compounds with the 3D Builder.

Learn More
  • Video
Workspace Toggles in Maestro

The sixth video in the Getting Going with Maestro Video Series: workspace toggles, the Sequence Viewer.

Learn More
  • Video
Using the Structure Hierarchy and Adding Surfaces in Maestro

The seventh video in the Getting Going with Maestro Video Series: the Structure Hierarchy adding surfaces.

Learn More
  • Video
Ligand Interaction Diagram and Generating Images in Maestro

The eigth video in the Getting Going with Maestro Video Series: the Ligand Interaction Diagram sharing images.

Learn More
  • Video
Ligand Preparation and Job Monitor in Maestro

The ninth video in the Getting Going with Maestro Video Series: ligand preparation with LigPrep, the Job Monitor, ligand alignment.

Learn More
  • Video
Preparing Protein Structures in Maestro

The tenth video in the Getting Going with Maestro Video Series: protein preparation with the Protein Preparation Workflow, setting up a Glide docking calculation.

Learn More
  • Video
Targeted R-Group Enumeration with the Ligand Designer in Maestro

The eleventh video in the Getting Going with Maestro Video Series: R-Group Enumeration and docking with the Ligand Designer, customizing an MPO, post-processing Ligand Designer outputs.

Learn More
  • Video
Setting up a BioLuminate Project

The first video in the Getting Going with Maestro BioLuminate Video Series: changing your working directory, saving projects, and more.

Learn More
  • Video
Importing and Rendering Structures in BioLuminate

The second video in the Getting Going with Maestro BioLuminate Video Series: importing structures from the Protein Data Bank (PDB), selection and inclusion and workspace styling options.

Learn More
  • Video
Interacting with Objects and Applications in BioLuminate

The third video in the Getting Going with Maestro BioLuminate Video Series: ways to use right-clicks in BioLuminate, managing surfaces.

Learn More
  • Video
Interacting with and Favoriting Applications in BioLuminate

The fourth video in the Getting Going with Maestro BioLuminate Video Series: favorites toolbar, navigating the Tasks menu.

Learn More
  • Video
Introduction to Workspace Toggles and the Structure Hierarchy in BioLuminate

The fifth video in the Getting Going with Maestro BioLuminate Video Series: workspace toggles, the Structure Hierarchy, Adding Antibody Annotations to the Structure Hierarchy, and performing measurements.

Learn More
  • Video
A Sneak Peek into Renumbering Residues and the Project Table in BioLuminate

The sixth video in the Getting Going with Maestro BioLuminate Video Series: renaming chains and residues, the Project Table.

Learn More
View All Videos

Quick reference sheets

A one-page PDF that visually describes the panel or workflow.

  • Quick Reference Sheet
2D Sketcher

Learn More
  • Quick Reference Sheet
Absolute Binding Affinity FEP+

Learn More
  • Quick Reference Sheet
GPU Shape

Learn More
  • Quick Reference Sheet
Isosteric Matching

Learn More
  • Quick Reference Sheet
LigPrep

Learn More
  • Quick Reference Sheet
PrimeX

Learn More
  • Quick Reference Sheet
Protein Preparation Workflow

Learn More
  • Quick Reference Sheet
Reaction-Based Enumeration

Learn More
  • Quick Reference Sheet
Residue Scanning

Learn More
  • Quick Reference Sheet
WScore Model Generation

Learn More
  • Quick Reference Sheet
Using the Command Line with Schrödinger Platform Cheat Sheet

Learn More
View All Quick Reference Sheets
Found 106 Results
  • Tutorial
Introduction to MD Simulations with Desmond

Prepare, run, and perform simple analysis on an all-atom MD simulation with Desmond.

Learn More
  • Tutorial
Designing Out Common ADMET Liabilities using Consensus IFD-MD

Use Consensus IFD-MD to generate a model that can be used to improve selecitvity between an on-target protein and hERG

Learn More
  • Tutorial
Ligand-based Screening for Ultra-Large Libraries with Quick Shape and the Hit Analyzer

Perform a Quick Shape screening on a library of 20000 compounds and analyze the results.

Learn More
  • Tutorial
Modeling Receptor Binding in an Olfactory Protein

Learn how to prepare structures for docking and create a protein mutation by modeling an olfactory receptor.

Learn More
Getting Going with Maestro BioLuminate Video Life Science
Getting Going with Maestro BioLuminate

A free video series introducing the basics of using Maestro Bioluminate.

Learn More
Getting Going with Maestro Video Life Science
Getting Going with Maestro

A free video series introducing the basics of using Maestro.

Learn More
  • Documentation
Online Help and Documentation

An online resource of information and instruction on how to use Schrödinger software including user manuals, panel descriptions, installation guides, reference sheets, tutorials, and more.

Learn More
  • Documentation
System Requirements

Information on supported platforms and the hardware required to run Schrödinger software.

Learn More
  • Tutorial
Understanding and Visualizing Target Flexibility

Evaluate PDB temperature factors, align binding sites, and use MD to identify flexibility.

Learn More
  • Tutorial
Re-scoring Docked Ligands with MM-GBSA

Optimize binding poses and re-score results of a small virtual screen

Learn More
  • Tutorial
Approximating Protein Flexibility without Molecular Dynamics

Soften potentials in Glide and run induced-fit docking for side chain conformational changes and loop refinement.

Learn More
  • Tutorial
Introduction to MD Trajectory Analysis with Desmond

Analyze an all-atom Desmond MD trajectory to study protein-ligand interactions.

Learn More
1 2 … 9

Additional Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

View Courses

Teaching with Schrödinger

Connect your students to industry-leading molecular modeling software through a web-based platform. Incorporate molecular modeling in the classroom.

Learn More
Other Resources