AutoTS

Automatic workflow for locating transition states for elementary reactions

AutoTS

Overview

Transition states are essential in many materials science applications: predicting reactivity, understanding reaction mechanisms, designing and optimizing catalysts, predicting outcomes of various competing reactions, and more. Locating a transition state (TS) is necessary for computing the activation energy of a reaction, and thereby the reaction rate, and it is unique to computation meaning that the transition state cannot be “found” in the lab.

AutoTS is an automated workflow to find transition states, particularly for elementary, molecular reactions. AutoTS requires only the structures of the reactants and the products as input, and then automates the search process to obtain the transition state and the reaction energetics.

Key Capabilities

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Perform iterative transition state searches, finding intermediates that connect reactants and products 
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Optimize reactants and products, determine breaking and forming bonds
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Allow for frozen atoms, spectator, and catalytic solvent molecules
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Establish correspondence between atoms in the reactants and products, and generate a transition state guess
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Print the potential energy surface diagram showing the transition state barrier
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Perform conformational searches on reactant, product, and transition state structures, outputting reaction energetics for improved accuracy
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Benefit from a library of transition state templates, speeding up transition state calculations for known reactions
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Allow for prediction of optional IRC (intrinsic reaction coordinate)
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Locate “proton shuttles” for any specified number of protic molecules involved

Broad applications across
materials science research areas

Get more from your ideas by harnessing the power of large-scale chemical exploration
and accurate in silico molecular prediction.

Polymeric Materials
Pharmaceutical Formulations & Delivery
Catalysis & Reactivity
Consumer Packaged Goods
Organic Electronics
Energy Capture & Storage

Documentation & Tutorials

Get answers to common questions and learn best practices for using Schrödinger’s software.

Materials Science Tutorial

Nanoreactor

Learn to leverage the nanoreactor tool to explore chemical compound and reaction space without any prior knowledge of the reaction products.

Materials Science Tutorial

Locating Transition States: Part 2

Demonstrate how to use a known transition state to locate the transition state of a similar reaction.

Materials Science Tutorial

Locating Transition States: Part 1

Locate a transition state (TS) for a typical organometallic reaction via three methods: standard TS search, coordinate scan, and AutoTS.

Life Science Tutorial

Locating Transition States: Part 1

Locate a transition state (TS) for a typical organometallic reaction via three methods: standard TS search, coordinate scan, and AutoTS.

Life Science Tutorial

Locating Transition States: Part 2

Demonstrate how to use a known transition state to locate the transition state of a similar reaction.

Materials Science Tutorial

RxnProfiler for Polyethene Insertion

Calculate polyethylene insertion reaction barriers for a novel catalyst based on a template catalyst.

Materials Science Tutorial

Design of Asymmetric Catalysts with Reaction Network Enumeration Profiler

Use automated reaction workflow (AutoRXNWF) and related tools to design asymmetric molecular catalysts based on enantioselectivity

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Publications

Browse the list of peer-reviewed publications using Schrödinger technology in related application areas.

Materials Science White Paper

An automated workflow for rapid large-scale computational screening to meet the demands of modern catalyst development

Materials Science Webinar

Accelerating the Design of Asymmetric Catalysts with a Digital Chemistry Platform

In this webinar, we demonstrate how Schrödinger’s advanced digital chemistry platform can be used to accelerate the direct design and discovery of asymmetric catalysts.

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Accelerating catalysis and reactivity R&D with atomic-scale simulation, machine learning, and enterprise informatics

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Quick Start Workshop: Materials Simulation for Experimentalists

In this webinar, learn how an experimentalist can take advantage of simulation and modeling, as well as practical knowledge about how to get started.

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How to Adopt the Next-Generation of Materials Screening for Catalysis Discovery: In Silico Design at the Enterprise Scale

In this webinar, learn how catalysts facilitate the creation of almost all synthetic materials we interact with every day.

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Modeling and Characterization of Recyclable Telechelic 1,3-Enchained Oligocyclobutanes: Density Functional Theory, Transition State Theory, and Molecular Dynamics Simulations

In this webinar, we present how density functional and transition state theory calculations of the proposed reaction mechanism explain the observed stereocontrol and thermoneutrality of the reversible reaction.

Materials Science Webinar

Schrödinger Materials Science Seminar Japan 2024 

《無料Webセミナー》材料開発向けシミュレーション・ソフトウェアおよびマテリアルズ・インフォマティクスの活用事例を紹介。

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Taking experimentation digital: Materials innovation using atomistic simulation and machine learning at-scale

In this webinar, we introduce a modern approach to materials R&D using a digital chemistry platform for in silico analysis, optimization and discovery.

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Automated digital prediction of chemical degradation products

In this webinar, we present Schrödinger’s enhanced Nanoreactor, expanding upon the tool developed by Grimme and co-workers with many new features, including improved energy refinement of results and integrated user interface.

Materials Science Publication

Chemical reaction networks explain gas evolution mechanisms in Mg-Ion batteries

Training & Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

Tutorials

Learn how to deploy the technology and best practices of Schrödinger software for your project success. Find training resources, tutorials, quick start guides, videos, and more.