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Limited Experimental Data? No Problem: Machine Learning and Physics in Preclinical Drug Discovery Webinar Life Science
  • Aug 31, 2021
Limited Experimental Data? No Problem: Machine Learning and Physics in Preclinical Drug Discovery

In this webinar, we provide three practical examples of the application of machine learning in active drug discovery programs.

Library design: New enumeration tools for lead optimization and idea generation Webinar Life Science
SARS-CoV-2 main protease inhibitors: Physics-based approaches to the discovery of COVID-19 antivirals Webinar Life Science
  • Jul 14, 2021
SARS-CoV-2 main protease inhibitors: Physics-based approaches to the discovery of COVID-19 antivirals

In this webinar, we focus on the medicinal and computational chemistry driven discovery of main protease inhibitors.

An Introduction to Automating Workflows with KNIME Webinar Life Science
  • Nov 5, 2016
An Introduction to Automating Workflows with KNIME

In this webinar, we give a brief overview on how to get started with KNIME and use Schrödinger Nodes to create workflows for use within KNIME and Maestro.

Design and Optimization of Biologics Driven by Physics-Based Computational Modeling Webinar Life Science
  • Jun 15, 2021
Design and Optimization of Biologics Driven by Physics-Based Computational Modeling

In this webinar, we address the important role that computational modeling can play in accelerating the discovery and development of novel biologics.

Computational workflows for bifunctional degrader design Webinar Life Science
Creating workflows with KNIME – Beyond the basics Webinar Life Science
  • Nov 5, 2018
Creating workflows with KNIME – Beyond the basics

In this webinar, we introduce some more advanced concepts to help you create more complex workflows.

Improving Protein-Ligand Modeling into Cryo-EM Data and the use of those Models in Drug Discovery Efforts Webinar Life Science
  • Feb 23, 2021
Improving Protein-Ligand Modeling into Cryo-EM Data and the use of those Models in Drug Discovery Efforts

Producing an accurate atomic model of protein-ligand interactions from the data generated by cryo-electron microscopy is often a challenging problem due to a combination of the noise in the experiment and the dynamic nature of protein-ligand binding.

Computer-aided Formulation Development for Small-molecule Drugs Webinar Life Science
  • Jul 16, 2020
Computer-aided Formulation Development for Small-molecule Drugs

In this webinar, we discuss the key areas of formulations science powered by the latest computation chemistry technology, including analysis of chemical processes, assessment of intermolecular interactions in particle/drug systems, and automated in silico property characterization.

Amplify discovery across vast chemical space Webinar Life Science
  • Jul 13, 2020
Active Learning Glide – Screen Billions of Compounds Efficiently and Cost Effectively

In this webinar, we illustrate how using an Active Learning approach combined with Glide enables cost effective and accurate screening of billion compound libraries.

Enzymes by Design: Structure-based Methods for Modeling Enzymes Webinar Life Science
  • Jul 8, 2020
Enzymes by Design: Structure-based Methods for Modeling Enzymes

An overview of how the Schrödinger technology can be used to optimize enzymes using structure-based rational design.

Antibody modeling with the Schrödinger Platform Webinar Life Science
  • May 27, 2020
Antibody modeling with the Schrödinger Platform

This webinar presents the tools available in BioLuminate to model antibody structures, covering homology modeling, humanization, antigen-antibody docking, liability prediction, and in silico mutations.

Events

2026 CMC Conference Event Materials Science
  • Apr 16, 2026
2026 CMC Conference

Schrödinger is excited to be participating in the 2026 CMC Conference conference taking place on April 14th – 16th in Portland, Oregon.

In-Cosmetics Global 2026 Event Materials Science
  • Apr 16, 2026
In-Cosmetics Global 2026

Schrödinger is excited to be participating in the In-Cosmetics Global 2026 conference taking place on April 14th – 16th in Paris, France.

Amplifying medicinal chemist impact with large-scale ideation, FEP+, machine learning, and retrosynthesis through LiveDesign Webinar Life Science
  • Apr 16, 2026
Amplifying medicinal chemist impact with large-scale ideation, FEP+, machine learning, and retrosynthesis through LiveDesign

Join us to see how Schrödinger’s Enterprise Informatics Platform, LiveDesign, serves as the single terminal to bridge this gap.

Webinars

Amplifying medicinal chemist impact with large-scale ideation, FEP+, machine learning, and retrosynthesis through LiveDesign Webinar Life Science
  • Apr 16, 2026
Amplifying medicinal chemist impact with large-scale ideation, FEP+, machine learning, and retrosynthesis through LiveDesign

Join us to see how Schrödinger’s Enterprise Informatics Platform, LiveDesign, serves as the single terminal to bridge this gap.

The unified antibody workbench: Optimizing antibody candidate selection through centralized team collaboration Webinar Life Science
  • Apr 21, 2026
The unified antibody workbench: Optimizing antibody candidate selection through centralized team collaboration

Join us for an interactive webinar where we showcase the power of LiveDesign for Biologics in a live demo and walk you through how you can quickly start benefiting from this powerful enterprise informatics platform today!

Standing out in a competitive landscape: The power of structure-based biologics design Webinar Life Science
  • Apr 23, 2026
Standing out in a competitive landscape: The power of structure-based biologics design

Join our upcoming webinar to learn how to leverage advanced in silico methods to de-risk your molecules and increase your experimental success rates.

Documentation

  • Documentation
Learning Path: Oligonucleotide Modeling

A structured overview of tools and workflows for nucleic acids in drug discovery.

  • Documentation
WaterMap

Efficiently converged MD simulations are run with explicit water molecules, and resultant trajectories are analyzed to cluster hydration sites.

  • Documentation
SiteMap

Identify binding sites, including allosteric binding sites and protein-protein interfaces, and evaluate their druggability.

Tutorials

  • Tutorial
Structure-Based Virtual Screening using Glide

Prepare receptor grids for docking, dock molecules and examine the docked poses.

  • Tutorial
Ligand Binding Pose Generation for FEP+

Generate starting poses for FEP simulations for a series of BACE1 inhibitors using core constrained docking.

  • Tutorial
Homology Modeling of Protein-Ligand Binding Sites with IFD-MD

Create a homology model of TYK2 from JAK3 and including a bound ligand. Compare this model with the crystal structure for TYK2 bound to 4GIH.

Training Videos

Getting Going with Maestro BioLuminate Video Life Science
Getting Going with Maestro BioLuminate

A free video series introducing the basics of using Maestro Bioluminate.

Getting Going with Maestro Video Life Science
Getting Going with Maestro

A free video series introducing the basics of using Maestro.

  • Video
Introducing Ligand Designer

An overview of the LigandDesigner workflow, Editing in 2D and 3D, using display options and overlays, and accessing the Admin Panel.

Publications

Case Studies

White Papers

FEP+ Pose Builder — maximizing utility and productivity in FEP simulations White Paper Life Science
  • Jan 29, 2026
FEP+ Pose Builder — maximizing utility and productivity in FEP simulations

FEP+ Pose Builder is a methodological advancement introduced as an integrated feature to drastically enhance accessibility, user-friendliness, and productivity within the FEP+ pipeline.

20 Years of Glide: A Legacy of Docking Innovation and the Next Frontier with Glide WS White Paper Life Science
  • Oct 29, 2024
20 Years of Glide: A Legacy of Docking Innovation and the Next Frontier with Glide WS

Glide has long set the gold standard for commercial molecular docking software due to its robust performance in both binding mode prediction and empirical scoring tasks, ease of use, and tight integration with Schrödinger’s Maestro interface and molecular discovery workflows.

QuickShape screening in the age of ultra-large libraries  White Paper Life Science

Quick Reference Sheets

  • Quick Reference Sheet
Force Field Builder

A one-page guide to calculate missing torsion parameters for ligands using the Force Field Builder panel.

  • Quick Reference Sheet
Ligand Interaction Diagram

A one-page guide to using the Ligand Interaction Diagram for examining ligand-receptor interactions.

  • Quick Reference Sheet
GlideMap

A one-page guide to using the GlideMap GUI for ligand placement guided by experimental density.

Latest insights from Extrapolations blog

With FEP+, “The Experiment is the Limit.”
With FEP+, “The Experiment is the Limit.”

Over the past century, small molecule drugs have represented the dominant modality in drug research, enabling medical breakthroughs that have saved countless lives.

Tackling Drug Solubility: AbbVie and Schrödinger Collaborate to Advance Accurate Prediction Methods (FEP)
Tackling Drug Solubility: AbbVie and Schrödinger Collaborate to Advance Accurate Prediction Methods

The complexity and size of drug candidates has grown in recent years as scientists pursue novel targets once considered undruggable.

Can AlphaFold Models be Used for Structure-Based Drug Design? A Perspective Two Years In Blog
Can AlphaFold Models be Used for Structure-Based Drug Design? A Perspective Two Years In

We recently sat down with Edward Miller, Senior Director of Protein Structure Modeling at Schrödinger, to discuss his experience using AlphaFold models for SBDD.

Training & Resources

Online certification courses

Level up your skill set with hands-on, online molecular modeling courses. These self-paced courses cover a range of scientific topics and include access to Schrödinger software and support.

Free learning resources

Learn how to deploy the technology and best practices of Schrödinger software for your project success. Find training resources, tutorials, quick start guides, videos, and more.