AI/ML-Powered Formulation Design: Accelerating Innovation

AI/ML-Powered Formulation Design: Accelerating Innovation

Overview:

Machine learning (ML) is revolutionizing formulation design by enabling data-driven predictions of critical performance indicators, such as solubility, viscosity, stability, and even sensory properties. Chemistry-informed AI/ML models provide a powerful framework for accelerating innovation across a wide range of formulations — from personal care and food, to pharma and battery electrolytes. By analyzing large, diverse datasets, ML can predict the behavior of new formulations, including complex mixtures and ingredients that are combinations of multiple mixtures, dramatically reducing reliance on trial-and-error approaches and speeding time-to-market.

Automated solutions can integrate ingredient composition and molecular structure to generate predictive models that optimize formulation performance. This empowers R&D teams to explore complex formulation spaces, reduce development cycles, and innovate more effectively. In this webinar, we will demonstrate how Schrödinger’s integrated ML- and physics-based approaches are transforming formulation design, with an emphasis on applications relevant to consumer packaged goods (CPG).

Key Learning Objectives:

  • How physics-based models can help generate meaningful data for enhancing ML models in projects with limited data inputs
  • How an automated ML solution, incorporating chemistry and composition, can predict solubility in multi-component systems
  • How ML models that are enhanced with physics-based descriptors can improve viscosity predictions
  • How formulation ML tools enable non-computational experts to design novel CPG products that meet multiple target criteria—a case study with shampoo formulations

Who Should Attend:

  • R&D Leaders
  • Innovation Managers
  • Digitization Managers
  • Synthetic Chemists
  • Materials Scientists
  • Chemical Engineers
  • Materials Research Engineers
  • Computational Chemists
  • Computational Materials Scientists

Our Speaker

Jeffrey Sanders

Product Manager and Technical Lead for Consumer Packaged Goods, Schrödinger

Jeff Sanders received his B.S. in applied physics from Worcester Polytechnic Institute and then his Ph.D. in biophysics and molecular pharmacology from Thomas Jefferson Medical College. Since joining Schrödinger in 2013, he has served several roles. Jeff is currently the product manager and technical lead for the consumer packaged goods applications group. Additionally, he is a managing board member of the Food Engineering, Expansion, and Development (FEED) Institute, and also holds a faculty position in the Food Science Department at UMass Amherst.

Supplier’s Day 2025

Conference

Supplier’s Day 2025

CalendarDate & Time
  • June 3rd-4th, 2025
LocationLocation
  • New York, New York

Schrödinger is excited to be participating in the Supplier’s Day 2025 conference taking place on June 3rd – 4th in New York, New York. Join us for a presentation by Jeff Sanders, Research Leader at Schrödinger, titled “Multiscale Modeling for Skin Innovation: Virtual Testing of Formulations and Tyrosinase Inhibitors for Barrier Repair and Hyperpigmentation.” Stop by booth 2405 to speak with Schrödinger scientists.

icon time JUN 4 | 10:35AM
icon location 3D02
Multiscale Modeling for Skin Innovation: Virtual Testing of Formulations and Tyrosinase Inhibitors for Barrier Repair and Hyperpigmentation

Speaker:
Research Leader, Schrödinger

Abstract:
The development of next-generation cosmeceuticals—such as tyrosinase inhibitors for skin-whitening or anti-aging—requires innovation in efficacy, safety, and sustainability. To meet these demands, computational chemistry and machine learning are transforming how ingredients and formulations are designed, tested, and optimized. These tools enable virtual screening of bioactives, mechanistic insights into enzyme interactions, and predictions of formulation stability and skin permeation—all before lab work begins.
Key methods include molecular docking, molecular dynamics, and free energy perturbation (FEP+), which together help identify and rank potent inhibitors targeting tyrosinase’s active site with high precision. In parallel, machine learning accelerates formulation development by predicting critical properties such as solubility, viscosity, and shelf-life performance. Simulations also support the evaluation of interactions between formulations and packaging materials, helping to anticipate product stability over time.
Together, these approaches reduce trial-and-error in R&D, enabling faster, data-driven decisions and the creation of safer, more effective, and more sustainable cosmeceutical products.

MS Surface

MS Surface

Solution for heterogeneous catalysis and materials processing

MS Surface

Overview

MS Surface provides diverse capabilities for exploring gas-surface reactions, by finding the structure of adsorbed fragments and quantifying adsorption or desorption free energies at the quantum mechanical level.

Key Capabilities

Explore the richness of surface chemistry by enumerating structural models of surface intermediates consisting of molecules or dissociated fragments adsorbed on various surface sites
Efficiently combine multiple molecules with multiple substrates in batch mode
Compute the free energy of adsorption of the reactant gas at a specified temperature and pressure, including reactive adsorption into fragments on the surface
Compute the free energy for desorbing product molecules under specified conditions
Calculate free energies based on quantum mechanical methods, incorporating the dominant contribution to entropy from the gas-phase species
Use MS Surface results as inputs for computing reaction kinetics, ranging from the activation energy along a particular pathway to the microkinetics of the entire process

Broad applications across materials science research areas

Documentation & Tutorials

Atomic Layer Deposition

Modeling Surfaces

Related Products

MS Microkinetics

Efficient tool for surface reaction kinetics

Quantum ESPRESSO Interface

Integrated graphical user interface for nanoscale quantum mechanical simulations

MS Reactivity

Automated workflows for design, optimization, and unsupervised mechanism discovery in molecular chemistry

Software & services to meet your organizational needs

Software Platform

Deploy digital materials discovery workflows with a comprehensive and user-friendly platform grounded in physics-based molecular modeling, machine learning, and team collaboration.

Research Services

Leverage Schrödinger’s expert computational scientists to assist at key stages in your materials discovery and development process.

Support & Training

Access expert support, educational materials, and training resources designed for both novice and experienced users.

BIO 2025

Conference

BIO 2025

CalendarDate & Time
  • June 16th-19th, 2025
LocationLocation
  • Boston, Massachusetts

Schrödinger is excited to be participating in the BIO 2025 conference taking place on June 16th – 19th in Boston, Massachusetts. Join us for a panel discussion with Jenny Chambers, Senior Director of Education at Schrödinger, titled “We Still Need the People: AI/ML Drug Discovery is Here to Stay, but we Could be its Rate Limiting Factor.”

icon time JUN 18 | 2:30PM
We Still Need the People: AI/ML Drug Discovery is Here to Stay, but we Could be its Rate Limiting Factor

Panel Participant:
Jenny Chambers, Senior Director of Education, Schrödinger

Abstract:
Computational methods including AI/machine learning have the potential to be transformational in biopharma by accelerating and enhancing many aspects of drug discovery to bring better drug candidates with a higher likelihood of success to the clinic. Robust data sets are often cited as the limiting factor for this technology. However, less discussed but crucial to the success of computational drug discovery is fostering a new generation of drug hunters with multi-disciplinary training needed to make the best use of these advancements. There may be a shortage of computational chemists and molecular modelers needed to explore the vast array of opportunities that can benefit from computational drug discovery. Hear from a panel of academic and industry leaders that are developing this next-generation, what is most important for them and what the broader ecosystem can do to help fill in the pipeline gaps and ensure we have the people in place to match the technology. This session will focus on the benefits of computational methods, including AI/machine learning, to advance drug discovery, as well as the importance of fostering the next generation of scientists leveraging these vast datasets.

Festival of Biologics 2025

Conference

Festival of Biologics 2025

CalendarDate & Time
  • April 23rd-24th, 2025
LocationLocation
  • San Diego, California

Schrödinger is excited to be participating in the Festival of Biologics 2025 conference taking place on April 23rd – 24th in San Diego, California. Join us for a poster presentation by Zhe Mei, Senior Scientist I at Schrödinger, titled “Antibody Optimization with Physics based and Machine Learning based modeling.” Stop by booth #835 to speak with Schrödinger scientists.

icon time 6:10 PM
Antibody Optimization with Physics based and Machine Learning based modeling

Speaker:
Zhe Mei, Senior Scientist I, Schrödinger

Abstract:
Optimizing antibody properties, such as binding affinity, stability and aggregation is crucial for developing safe and effective biotherapeutics. This work presents an integrated approach leveraging physics-based modeling and machine learning to address these challenges. We use both methods to predict 3D structures and calculate a rich set of sequence-based, structure-based and surface patch-based protein descriptors that can be used to train machine learning models. Further, we can identify hotspots for targeted optimization of stability and affinity and apply physics-based methods like free energy perturbation (FEP+) to design improved and developable variants.

Schrödinger User Group Meeting – Materials Science Japan 2025 Part 2

User Group Meeting
CalendarDate & Time
  • June 11th, 2025
  • 10:00 – 17:30
LocationLocation
  • Tokyo, Japan

Schrödinger User Group Meeting – Materials Science Japan 2025 Part 2

Electronic Materialsをテーマに、弊社サイエンティストや各製品の開発責任者から、最新機能、応用事例、今後の展望などを、セミナー形式でご紹介いたします。

発表要旨はこちらからご覧いただけます。

icon time 10:00 – 10:05
ご挨拶

icon time 10:05 – 10:45
機械学習を用いた有機EL用発光材料の分子デザイン

九州大学 最先端有機光エレクトロニクス研究センター 特任准教授 土屋 陽 一様

icon time 10:45 – 11:25
Advancing Materials Science with Schrödinger: Latest Innovations, Future Roadmap, and Key Applications Impacting Electronics Applications

Mathew D. Halls, Senior Vice President, Materials Science

icon time 11:25 – 12:05
Digital Solutions for Display Technology: From Materials to Devices

Hadi Abroshan, Principal Scientist

icon time 13:05 – 13:45
Innovating Polymers for Advanced Electronic Packaging Using Schrödinger Materials Science Suite

Andrea Browning, Senior Director, Polymers and Soft Matter

icon time 13:45 – 14:25
高速分子動力学計算と量子力学計算の組み合わせによるGHz以上の高周波数における誘電率と誘電正接の計算方法

マテリアルズ サイエンス シニア ディレクター 森里 嗣生

icon time 14:35 – 15:15
New Developments in Schrödinger Machine Learning Force Fields for Liquid and Solid Phase Materials: Accurate and Efficient Long Range Electrostatics using MPNICE

Jack Weber, Senior Scientist

icon time 15:15 – 15:55
New Surface Modelling Tools and Their Application in Thin Film Processing

Simon Elliott, Director of Atomic Level Process Simulation

icon time 16:05 – 16:45
Schrödinger Reactivity and Catalysis Tools for Electronic Materials Simulation

Pavel A. Dub, Product Manager Catalysis and Reactivity

icon time 16:45 – 17:25
強化学習を使用したSurface Walking法による遷移状態探索

シニア サイエンティスト 大塚 勇起

icon time 17:25 –
懇親会

【開催形式と会場】
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会場
トラストシティ カンファレンス・丸の内
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【参加費】
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E-mail: info-japan@schrodinger.com

MS Batteries – Michael Rauch

Molecular Insight, Material Impact

Molecular Insight, Material Impact

Please find within this page details around utilizing Schrödinger’s software and services within the Battery industry.

Battery Presentation

Download our Battery presentation to learn more about Schrödinger and our software capabilities.

Typical Roadmap to Adoption

Here is an example of an adoption pattern followed by similar companies. This is completely customizable and can be segmented to meet your needs.

1

Technical Engagement

Meet with our experts to discuss how modeling and simulation can address your R&D needs

2

Contract Research

Optionally, outsource a project to our experienced contract research team

3

Training & Courses

Learn to use our software – whether you are a complete beginner or expert

4

Software Adoption

Bring the tools that you need in-house to meet your R&D goals

5

Ongoing Support

Receive premium support from our expert scientific team

Webinars and White Papers

High-performance materials discovery: A decade of cloud-enabled breakthroughs Webinar Materials Science
High-performance materials discovery: A decade of cloud-enabled breakthroughs

This talk will showcase how Schrödinger’s integrated materials science platform enables massive parallel screening and de novo design campaigns across diverse applications.

How Physics-based Modeling and Machine Learning Enable Accelerated Development of Battery Materials Webinar Materials Science
How Physics-based Modeling and Machine Learning Enable Accelerated Development of Battery Materials

In this webinar, we focus on examples to demonstrate the application of automated solutions for accurate prediction of thermodynamic stability and voltage profile of cathode materials, ion diffusion pathways and kinetics in electrode materials, transport properties of liquid electrolytes and modeling the nucleation and growth of solid electrolyte interphase (SEI) layers using Schrödinger’s SEI simulator module.

Electrodes, electrolytes & interfaces: Harnessing molecular simulation and machine learning for rapid advancements in battery materials development Webinar Materials Science
Electrodes, electrolytes & interfaces: Harnessing molecular simulation and machine learning for rapid advancements in battery materials development

In this webinar, we demonstrate the application of automated solutions for accurate prediction of electrode materials.

Purposeful simulation: Maximising impact in surface chemistry modelling Webinar Materials Science
Purposeful simulation: Maximising impact in surface chemistry modelling

In this webinar, learn about a variety of atomistic models of surfaces and gain perspective on the underlying rationale, benefits and limitations of each.

Publications

Exploring Molecules with Low Viscosity: Using Physics-Based Simulations and De Novo Design by Applying Reinforcement Learning

Panasonic Publication

Read
Designing the next generation of polymers with machine learning and physics-based models

SABIC Publication

Read
Quantum chemical package Jaguar: A survey of recent developments and unique features

Schrödinger Publication

Read
Leveraging high-throughput molecular simulations and machine learning for the design of chemical mixtures

Schrödinger Publication

Read
Accurate Quantum Chemical Reaction Energies for Lithium-Mediated Electrolyte Decomposition and Evaluation of Density Functional Approximations

Academic Publication

Read
High-Dimensional Neural Network Potential for Liquid Electrolyte Simulations

Schrödinger Publication

Read

Educator’s Month: Molecules & Models – A Virtual Science Fair

Virtual Science Fair

Educator’s Month – Molecules & models: A virtual science fair

CalendarDate & Time
  • June 12th, 2025
LocationLocation
  • Virtual

As part of Educator’s Month, Schrödinger hosted its first Virtual Science Fair on June 12, 2025. This free event invited undergraduate students from across the U.S. to showcase their research, engage in discussions with Schrödinger judges, and compete for awards recognizing their creativity, effort, and commitment.

The Virtual Science Fair was open to first-time undergraduate participants from a wide range of disciplines. All projects were required to include a computational component, such as artificial intelligence, experimental design, or molecular modeling in fields including drug discovery, agrochemicals, materials science, medicinal and organic chemistry, pharmaceuticals, polymers, catalysis, computational biology, biophysics, or theoretical chemistry.

Winners received a cash prize and one year of unlimited access to Schrödinger’s online certification courses – supporting both their research and ongoing computational skill development.

Presentation Recordings

  • Computational Design of de novo Transcription Factors for Targeted Genetic Repression
    Speaker:
    Beau Lonnquist, University of Washington, (science fair winner)
    Watch now
  • Modeling Molecular Scale Dynamics of Kinetically Gated Carbon Dioxide Capture Using Photoswitch Functionality in Metal Organic Frameworks
    Speaker:
    Ryan Miller, Pacific University, (science fair winner)
    Watch now
  • Molecular Basis of Adenylyl Cyclase 1 Activation Revealed by MD Simulations
    Speaker:
    Shreya Krishnan, Purdue University, (science fair winner)
    Watch now
     
  • Repurposing L-Type Calcium Channel Blockers as Respiratory Virus Therapeutics: A Computational Modeling Approach
    Speaker:
    Aiden T. Day, Saint Joseph’s College of Maine
    Watch now
  • Discovery of FabG Inhibitors for Yersinia pestis Using Computational and Biochemical Approaches
    Speaker:
    Catalina Colling, University of Texas at Austin
    Watch now
     
  • Analyzing the Value of Machine Learning in Improving the Acceptance Rate for Metropolis Monte Carlos
    Speaker:
    Enoch Woldu, University of Chicago
    Watch now
  • Comparative Molecular Drug Docking to hERG and CaV1.2- Channels to Understand Drug-Induced Cardiac Risks
    Speaker:
    Ensley Jang, University of California, Davis
    Watch now
     
  • Computational Development of a Hydrolase with Increased Degradation Capabilities Against Crystalline PET
    Speaker:
    Mena Boggs, NCSSM/NC State University
    Watch now
  • Protein and Solvent Dynamics Simulations to Understand Cancer Mutations
    Speaker:
    Michael Sarullo, Yale University
    Watch now
     
  • Dynamic Docking: A Scalable Computational Framework for Conformational Profiling of Small Molecule/RNA Binding
    Speaker:
    Nakul Balaji, Florida Atlantic University
    Watch now
  • Discovery of Aza-stilbene as a Scaffold for a Histamine Receptor H2 Antagonist for the Treatment of Gastroesophageal Reflux Disease
    Speaker:
    Nihar Kummetha, North Carolina School of Science and Mathematics
    Watch now
     
  • Analyzing Quantum Exceptional Point Invisibility for Experimentally Realizable Triple-Gaussian Potentials
    Speaker:
    Shrikar Dulam, University of Illinois, Urbana-Champaign
    Watch now
  • Deep Learning–Based Structural Modeling of YscF Mutants Reveals Determinants of Type III Secretion System Architecture in Yersinia pestis
    Speaker:
    Stephanie Bellido, Nova Southeastern University
    Watch now
     
  • Extending the Functionality of the Excel-to-SBOL Converter for Broader Synthetic Biology Applications
    Speaker:
    Taisiia Sherstiukova, University of Colorado Boulder
    Watch now
  • BitBIRCH: Efficiently Clustering 1 Billion Molecules
    Speaker:
    Vicky Jung, University of Florida
    Watch now

SAMPE 2025

Conference

SAMPE 2025

CalendarDate & Time
  • May 19th-22nd, 2025
LocationLocation
  • Indianapolis, Indiana

Schrödinger is excited to be participating in the SAMPE 2025 conference taking place on May 19th – 22nd in Indianapolis, Indiana. Join us for a presentation by Andrea Browning, Director of Polymers and Soft Matter at Schrödinger, titled “Aiding Sustainable Composites Development with Simulation of Natural Fibers.” Stop by booth U15 to speak with Schrödinger scientists.

icon time MAY 20 | 10:30AM
Accelerating innovation in advanced composites with a digital chemistry platform

Speaker:
Andrea Browning, Director of Polymers and Soft Matter, Schrödinger

Abstract:
Demands for advanced materials and processes have grown as various industries search for improved and lower cost solutions. Their development has traditionally relied on experimental exploration of candidate chemistries, which is time-consuming, expensive and limited in scope. Optimizing key properties of advanced composites, coatings and energy storage requires understanding of their chemistry and microstructure at atomic level. Physics-based modeling and chemistry-informed machine learning (ML) can significantly accelerate the development process from material selection to processing and lifetime analysis, ensuring that target performance is met. In this presentation, we will show how Schrödinger’s digital chemistry technology can catalyze formulation development through efficient screening of candidate mixtures and increase fundamental understanding of structure-property relationships. We will showcase how our AI/ML and physics-based tools can be applied to the screening of polymer chemistries for target thermomechanical properties for thermosets, efficient additive selection for complex coatings and reactivity at interfaces.

icon time MAY 21 | 3:00PM
icon location Room 126
Aiding Sustainable Composites Development with Simulation of Natural Fibers

Speaker:
Andrea Browning, Director of Polymers and Soft Matter, Schrödinger

Abstract:
Natural fibers have gained interest as potential components to improve the overall sustainability of composite materials. However, natural fibers have unique challenges and cannot be simply substituted for carbon or glass fibers. Better understanding of how natural fibers behave with standard and new resins, along with how they can degrade can help to reduce the risk in transitioning to these new materials. Molecular scale simulation is a powerful tool to provide that understanding. The interaction between resin and natural fibers as well as the impact of compatibilizers are important in designing a composite formulation for use with natural fibers. The degradation of natural fiber chemistry, cellulose, is also insightful as part of the recycling potential for natural fiber composites. This study will present molecular level simulations that address both the natural fiber composite mechanical properties, as well as degradation of cellulose. These findings highlight the impact of molecular simulations to bridge the connection between molecular level interactions and design considerations in natural fiber composites, aiding in the design of more sustainable composites.

Accelerating OLED innovation with multi-scale, multi-physics simulations

APRIL 16, 2025

Accelerating OLED innovation with multi-scale, multi-physics simulations

OLED technology is widely used in mobile devices, AR/VR systems, and automotive displays, with its flexibility enabling foldable devices and enhanced user interactions. However, advancing OLEDs requires overcoming challenges such as improving efficiency, extending lifetime, ensuring color stability, and optimizing scalable manufacturing. Since device performance depends on both material properties and fabrication methods, a deeper understanding of OLED materials and device architectures is essential for innovation.

Traditional trial-and-error approaches to materials discovery are costly and time-consuming. To address this, we present the synergistic application of Ansys and Schrödinger predictive technologies to accelerate OLED development through a multi-scale, multi-physics simulation approach. This framework integrates:

  • Molecular modeling to predict materials properties at atomistic scale
  • Nanoscale simulations to examine photonic responses and light-matter interactions
  • Macroscale modeling to assess human perception of displays in real-world conditions

By combining Schrödinger’s expertise in molecular simulations with Ansys’s advanced device modeling, this approach enables faster, cost-effective OLED innovation. Join us to explore how integrated digital workflows drive the design of next-generation, high-performance OLEDs.

Our Speakers

Hadi Abroshan

Principal Scientist I, Schrödinger

Hadi Abroshan is the Product Manager for Organic Electronics at Schrödinger. He holds a Ph.D. from Carnegie Mellon University and has conducted research at Stanford University and Georgia Tech. Hadi specializes in multiscale simulations, leading projects to design cost-effective multifunctional materials for optoelectronics. His expertise lies in developing computational strategies that bridge atomistic structures to multilayered device scales, using a blend of physics-based methodologies and machine learning techniques. His work has led to the discovery of novel, environmentally friendly materials and processes with superior efficiencies.

Thibault Leportier

Senior R&D Engineer, Ansys

Thibault Leportier is an optical scientist with expertise in geometrical and Fourier optics, lasers, and metrology. Holding a Ph.D. in 3D display technologies and digital holography, Thibault has worked extensively on waveguide design for smart glasses and eye-tracking applications. Currently, his focus is on developing innovative solutions to bridge nanoscale simulations with macroscale optical systems, including advancements in metalens and grating models.

23rd Schrödinger European User Group Meeting 2025

User Group Meeting
CalendarDate & Time
  • June 3rd-5th, 2025
LocationLocation
  • Budapest, Hungary

We are pleased to invite you to the 23rd Schrödinger European User Group Meeting

This in-person event will bring together a dedicated group of Schrödinger team members and customers from across Europe. The event will be held at the Hotel Hilton, located within the historic Fisherman’s Bastion.

We are preparing an interactive program including scientific presentations, workshops, and panel discussions, as well as ample opportunities for networking during breaks and evening social events. You will have the chance to enjoy a historic city renowned for its stunning architecture, vibrant culture, and scenic beauty along the Danube River.

Event Highlights

  • User talks highlighting applications of computational molecular design methods for drug discovery
  • Schrödinger presentations and hands-on workshops outlining the latest developments of our molecular design platform
  • Interactive panel discussions
  • Opportunities for 1:1 meetings
  • Networking dinners and receptions

Meeting Details

The event begins on Tuesday, June 3rd at 9:30 AM CET and ends in the afternoon on Thursday, June 5th. To ensure that you don’t miss the opening morning talks, we recommend arriving on Monday, June 2nd.

This year’s meeting will feature sessions on:

  • Scaling predictive models for real-world impact
  • Designing safer molecules by predicting and preventing liabilities
  • Flexible workflows to leverage project insights
  • Target-specific strategies for physics-based modeling
  • Schrödinger’s platform and scientific roadmap

Registration Details

REGISTRATION & HOTEL PACKAGES

We are pleased to offer a specially negotiated conference package at the Hotel Hilton Budapest, available when you register for the event (subject to availability). This comprehensive package includes accommodation, lunches, and dinners (dinners on June 3rd and 4th) to enhance your experience.

Hotel Hilton Package

Stay dates: June 2 – 5, 2025

This conference package includes:

  • Conference registration
  • Three nights of accommodation
  • Daily breakfast
  • Daily lunch
  • Dinner on June 3rd and 4th

Regular rate: EUR 1.150

Conference Only – Registration

This option includes:

  • Conference registration
  • Daily lunch
  • Dinner on June 3rd and 4th

Regular rate: EUR 450

Agenda

FAQs

EVENT INFORMATION

Who should come to the event?

This event is ideal for professionals and experts working in drug discovery. Attendees can include scientists, researchers, product development specialists, R&D managers, executives, and anyone interested in exploring the potential of digital chemistry, molecular modeling, and machine learning to drive innovation in pharmaceutical and biotech industries.

Will the content be available on demand after the event? 

No, the content will most likely not be available on demand after the event. It is essential to attend the live event to benefit from the valuable insights, case studies, and panel discussions shared during the user group meeting.


REGISTRATION

What does the ticket include?

Please see the Registration Details section on the event homepage for details of what is included in each registration package, here: Registration Packages.

What is the cancellation policy?

For cancellation requests, please contact us at europe_ugm@schrodinger.com. Cancellation details vary by conference package, as described below:

Hotel  Packages
Cancellation requests made before April 1, 2025 will be eligible for a full 100% refund.

Conference Only
Cancellation requests made before May 5, 2025 for conference only tickets will be eligible for a full 100% refund.

Are attendee substitutions permitted?

Yes, attendee substitutions are permitted. If you are unable to attend the event, you can request a substitution by contacting us at europe_ugm@schrodinger.com. Please provide the name and contact information of the person who will attend as your substitute.

Whom should I contact if I have special needs?

If you have special needs, please inform us during the registration process. You can also contact us at europe_ugm@schrodinger.com to discuss your requirements.


ACCOMMODATIONS

Please see the Registration Details section on the event homepage for details of hotel conference packages negotiated by Schrödinger, here: Registration Packages.

Target enablement, preparation, & validation

Target Enablement Course Image of a ligand and protein

Target enablement, preparation, & validation


Enabling protein structures from x-ray crystallography, cryo-EM, ML-methods, and homology modeling for structure-based computational workflows

Details
Modules
5
Duration
Up to 20 hours over 5 weeks from selected start date
Level
Intermediate
Cost
$715 for non-student users
$270 for student / post-doc
Who should take this course?
Medicinal chemists, cheminformaticians, ML scientists, new computational chemists, and structural biologists

Overview

With the explosion of available structures from x-ray crystallography, cryo-EM and, more recently, machine learning (ML) methods, there is a growing need for tools and workflows for preparing, refining and validating structures for structure-based computational workflows.

Schrödinger’s online course, Target Enablement, Preparation, and Validation will provide expert guidance and best practices to equip you to enable projects for prospective structure-based computational modeling workflows such as virtual screening, molecular dynamics simulations, and free energy perturbation calculations.

This course is ideal for those who wish to develop professionally and expand their CV by earning certification and a badge.

  • Work hands-on with Schrödinger’s industry-leading Maestro and command line interface
  • Jump start your research program by learning methods that can be directly applied to ongoing projects
  • Learn topics ranging from refining AlphaFold structures to cryptic pocket identification
  • Independently perform a case study to demonstrate mastery of the course content
  • Benefit from review and feedback from Schrödinger Education Team experts for course assignments and course-related queries
  • Work on the course materials on your own schedule whenever convenient for you within the course session

 

This course comes with access to a web-based version of Schrödinger software with the necessary licenses and compute resources for the course:

Requirements
  • A computer with reliable high speed internet access (8 Mbps or better)
  • A mouse and/or external monitor (recommended but not required)
  • Working knowledge of general chemistry and structural biology
  • Working knowledge of Maestro. This course will not teach you how to navigate the Schrödinger graphical user interface, Maestro. Please work through our Getting Started with Maestro resources to become familiar with using Maestro.
Certification
  • A certificate signed by the Schrödinger course lead to add to your CV or resume
  • A badge that can be posted to social media, such as LinkedIn
background pattern

What you will learn

X-ray and cryo-EM structures

Learn best practices for preparing and refining experimental structures of varying quality

ML-predicted structures and homology modeling

Learn best practices for working with and refining ML-predicted structures (such as from AlphaFold) and homology models

Binding site identification

Learn how to evaluate the drugability of small molecule binding site, as well as search for and characterize potential cryptic pockets

Prospective enablement of a target

Apply your skills by independently enabling a target through thorough inspection of available structures, analysis, and refinement

Modules

Module 1
2 Hours

Target enablement methods and the value of structural validation

Video
Video

Course overview

Checkpoint
Syllabus and honor code

Expectations surrounding academic integrity

Video Tutorial
Videos
  • The importance of structure validation in computational experiments for drug discovery
  • Comparing common target enablement methods
End checkpoint
End of module checkpoint
Module 2
5 Hours

Starting point: X-ray crystal and cryogenic electron microscopy structures

Video
Video

Structure availability and experimental considerations

Tutorial
Tutorials:
  • Structure quality metrics
  • Inspection workflows
  • Protein preparation
  • Basic refinement
End checkpoint
End of module checkpoint
Module 3
4 Hours

Starting point: AlphaFold structures and homology models

Video
Video

Generating, inspecting, and validating AlphaFold and homology models

Tutorial
Tutorials
  • Obtaining and reviewing AlphaFold structures
  • Homology modeling
  • Model refinement methods
End checkpoint
End of module checkpoint
Module 4
5 Hours

Next steps: advanced preparation, refinement, and validation of structures

Video
Video

Refinement and validation methods for more challenging targets

Tutorial
Tutorials
  • Manual protein preparation
  • SiteMap
  • Mixed Solvent Molecular Dynamics
  • WaterMap
End checkpoint
End of module checkpoint
Module 5
4 Hours

Case study: prepare and validate a structure for computational drug discovery

Video
Video
  • Case study overview
  • Case study findings and course closing
Tutorial
Tutorial

Structural inspection, preparation, and validation

Assignment
Assignment

Review and discuss case study findings

Course completion
Course completion and certification

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